Wall clock time and date at job start Wed Apr 1 2020 02:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47226 * 2 1 4 4 C 1.50693 * 109.47395 * 240.00095 * 2 1 3 5 5 H 1.08006 * 120.00220 * 275.03573 * 4 2 1 6 6 C 1.37873 * 120.00296 * 95.03752 * 4 2 1 7 7 N 1.31514 * 120.00383 * 174.97419 * 6 4 2 8 8 Si 1.86801 * 119.99886 * 354.97371 * 6 4 2 9 9 H 1.48502 * 109.47022 * 94.95833 * 8 6 4 10 10 H 1.48506 * 109.47434 * 214.96017 * 8 6 4 11 11 H 1.48501 * 109.47192 * 334.95838 * 8 6 4 12 12 N 1.46505 * 109.46827 * 120.00109 * 2 1 3 13 13 C 1.34778 * 119.99701 * 274.99788 * 12 2 1 14 14 O 1.21355 * 120.00278 * 0.02562 * 13 12 2 15 15 C 1.49352 * 119.99820 * 180.02562 * 13 12 2 16 16 O 1.21385 * 119.99944 * 0.02562 * 15 13 12 17 17 N 1.34771 * 119.99986 * 180.27978 * 15 13 12 18 18 C 1.39754 * 120.00046 * 175.12546 * 17 15 13 19 19 C 1.39051 * 120.00567 * 214.83951 * 18 17 15 20 20 C 1.38183 * 120.21120 * 179.76495 * 19 18 17 21 21 C 1.38046 * 120.22470 * 0.50676 * 20 19 18 22 22 C 1.39574 * 120.00662 * 359.74602 * 21 20 19 23 23 C 1.47879 * 120.10264 * 180.02562 * 22 21 20 24 24 N 1.30225 * 125.46890 * 179.67248 * 23 22 21 25 25 C 1.31306 * 117.03980 * 179.76850 * 24 23 22 26 26 C 1.33726 * 115.84985 * 0.53113 * 25 24 23 27 27 S 1.76172 * 125.47662 * 359.97438 * 23 22 21 28 28 C 1.38653 * 120.00423 * 35.10708 * 18 17 15 29 29 H 1.08998 * 109.47226 * 184.99958 * 1 2 3 30 30 H 1.08993 * 109.47235 * 305.00557 * 1 2 3 31 31 H 1.09001 * 109.46405 * 65.00235 * 1 2 3 32 32 H 0.97002 * 120.00502 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00213 * 95.00103 * 12 2 1 34 34 H 0.97001 * 120.00170 * 355.11883 * 17 15 13 35 35 H 1.08004 * 119.89187 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.88939 * 180.23248 * 20 19 18 37 37 H 1.08001 * 119.99596 * 179.76320 * 21 20 19 38 38 H 1.08003 * 122.07514 * 180.24894 * 25 24 23 39 39 H 1.07993 * 125.89248 * 179.75781 * 26 25 24 40 40 H 1.07999 * 120.11521 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1350 -1.7855 -1.2292 6 6 2.3611 0.0122 -2.3577 7 7 2.8921 -0.5951 -3.3964 8 14 2.0521 1.8537 -2.4098 9 1 3.2898 2.5746 -2.0177 10 1 1.6624 2.2516 -3.7865 11 1 0.9583 2.1990 -1.4665 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8580 1.1591 2.4118 15 6 2.6453 -0.7222 3.5765 16 8 2.9348 -1.8997 3.5218 17 7 2.7687 -0.0512 4.7388 18 6 3.1370 -0.7316 5.9027 19 6 2.6115 -0.3441 7.1304 20 6 2.9689 -1.0169 8.2832 21 6 3.8581 -2.0713 8.2252 22 6 4.3952 -2.4646 6.9984 23 6 5.3474 -3.5942 6.9337 24 7 5.9053 -4.0511 5.8493 25 6 6.7323 -5.0620 5.9838 26 6 6.8991 -5.5170 7.2301 27 16 5.9036 -4.5428 8.3101 28 6 4.0307 -1.7894 5.8341 29 1 -0.3633 -1.0237 0.0896 30 1 -0.3633 0.5895 0.8417 31 1 -0.3632 0.4343 -0.9314 32 1 3.1230 -0.0868 -4.1897 33 1 2.2490 -1.6318 1.1527 34 1 2.6019 0.9039 4.7676 35 1 1.9191 0.4831 7.1826 36 1 2.5547 -0.7140 9.2336 37 1 4.1379 -2.5921 9.1290 38 1 7.2424 -5.5019 5.1395 39 1 7.5347 -6.3391 7.5243 40 1 4.4437 -2.0890 4.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122813322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:58 Heat of formation + Delta-G solvation = 9.682129 kcal Electronic energy + Delta-G solvation = -26136.785939 eV Core-core repulsion = 22236.757168 eV Total energy + Delta-G solvation = -3900.028771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94231 -39.84313 -39.06718 -37.96007 -35.54279 -34.75141 -32.48545 -32.35693 -30.27809 -29.88150 -29.46880 -25.71806 -25.45540 -25.03325 -23.12648 -22.23998 -20.73377 -20.05815 -19.69970 -18.77842 -18.42511 -17.12146 -16.86688 -16.57011 -15.95820 -15.81557 -15.51458 -15.28296 -14.86976 -14.75041 -14.38679 -14.12897 -13.82717 -13.58606 -13.31321 -13.29025 -12.93892 -12.61613 -12.45818 -12.27386 -11.90707 -11.67528 -11.61944 -11.31877 -11.18782 -10.86942 -10.71092 -10.57920 -10.03044 -9.94451 -9.91362 -9.56164 -9.28544 -9.20189 -8.82104 -8.62454 -8.35414 -8.30703 -6.28848 -4.33413 -0.05120 0.96981 0.98503 1.26378 1.39731 1.77830 2.53907 2.67885 3.20954 3.30246 3.35664 3.46053 3.65250 3.71777 3.96477 4.26725 4.56369 4.69643 4.80512 4.86692 4.88137 4.97721 5.15792 5.17791 5.20044 5.28207 5.60627 5.85439 5.97562 6.04766 6.13864 6.19465 6.21908 6.41623 6.54507 6.68859 6.76467 6.93163 7.09436 7.21837 7.37221 7.47808 7.72565 8.01582 8.39138 8.54880 8.74660 9.31144 10.82533 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.002421 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.110623 B =11561.099383 C =12962.348327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.229 3.771 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.883 5.883 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.256 1.256 12 N -0.661 5.661 13 C 0.496 3.504 14 O -0.540 6.540 15 C 0.506 3.494 16 O -0.495 6.495 17 N -0.652 5.652 18 C 0.147 3.853 19 C -0.124 4.124 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.016 4.016 23 C 0.123 3.877 24 N -0.458 5.458 25 C 0.045 3.955 26 C -0.252 4.252 27 S 0.080 5.920 28 C -0.073 4.073 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.269 0.731 33 H 0.407 0.593 34 H 0.424 0.576 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.178 0.822 39 H 0.180 0.820 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -4.284 26.732 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.128 3.872 3 H 0.073 0.927 4 C -0.572 4.572 5 H 0.100 0.900 6 C -0.123 4.123 7 N -0.519 5.519 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.180 1.180 12 N -0.311 5.311 13 C 0.274 3.726 14 O -0.419 6.419 15 C 0.289 3.711 16 O -0.367 6.367 17 N -0.300 5.300 18 C 0.052 3.948 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.134 4.134 22 C -0.020 4.020 23 C -0.151 4.151 24 N -0.170 5.170 25 C -0.107 4.107 26 C -0.391 4.391 27 S 0.335 5.665 28 C -0.097 4.097 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.195 0.805 39 H 0.197 0.803 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.835 -4.115 26.973 27.553 hybrid contribution 0.493 0.362 -0.881 1.073 sum 4.328 -3.754 26.091 26.713 Atomic orbital electron populations 1.22268 0.98028 1.00459 1.00154 1.19308 0.91233 0.94434 0.82242 0.92712 1.20973 1.45483 0.95889 0.94900 0.89993 1.24934 0.93205 0.98665 0.95469 1.69890 1.39972 1.36842 1.05172 0.86922 0.79912 0.85431 0.77924 1.19945 1.20867 1.18000 1.46672 1.60971 1.14880 1.08543 1.19752 0.80979 0.87278 0.84549 1.90713 1.51190 1.15256 1.84788 1.20956 0.78184 0.87176 0.84800 1.90784 1.46027 1.15509 1.84390 1.43210 1.67271 1.13171 1.06317 1.17666 0.95747 0.95340 0.86033 1.21131 1.00376 1.01859 0.91231 1.20780 0.97519 0.95256 0.98159 1.21111 0.98244 0.98072 0.96021 1.17645 0.96635 0.93762 0.93971 1.25885 1.00299 0.99310 0.89653 1.66571 1.09430 1.12171 1.28878 1.21769 0.97666 0.93978 0.97295 1.27057 1.08241 1.07611 0.96164 1.84827 1.40183 1.27463 1.14045 1.21482 0.94458 0.94317 0.99429 0.93290 0.95041 0.92165 0.92109 0.75714 0.73738 0.84819 0.84711 0.85657 0.80540 0.80311 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.17 37.16 0.34 -2.84 16 2 C 0.23 5.35 2.10 -69.08 -0.15 5.20 16 3 H 0.06 1.36 5.03 -51.93 -0.26 1.10 16 4 C -0.53 -14.25 9.05 -34.45 -0.31 -14.56 16 5 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16 8 Si 0.87 20.80 26.57 -169.99 -4.52 16.28 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.26 -5.88 6.19 56.52 0.35 -5.53 16 12 N -0.66 -13.68 5.06 -55.40 -0.28 -13.96 16 13 C 0.50 9.47 7.85 -11.63 -0.09 9.38 16 14 O -0.54 -11.09 16.14 5.49 0.09 -11.01 16 15 C 0.51 8.39 7.73 -11.63 -0.09 8.30 16 16 O -0.49 -9.07 13.91 5.47 0.08 -8.99 16 17 N -0.65 -8.59 5.32 -10.33 -0.05 -8.65 16 18 C 0.15 1.80 6.29 -83.79 -0.53 1.28 16 19 C -0.12 -1.14 9.96 -39.30 -0.39 -1.53 16 20 C -0.10 -0.77 10.02 -39.67 -0.40 -1.17 16 21 C -0.11 -1.02 9.60 -39.15 -0.38 -1.40 16 22 C -0.02 -0.19 5.87 -105.00 -0.62 -0.80 16 23 C 0.12 1.50 7.35 -14.29 -0.10 1.39 16 24 N -0.46 -6.22 10.14 -11.35 -0.12 -6.34 16 25 C 0.04 0.47 11.25 -19.36 -0.22 0.25 16 26 C -0.25 -2.10 11.35 29.15 0.33 -1.77 16 27 S 0.08 0.70 22.39 -107.50 -2.41 -1.71 16 28 C -0.07 -1.02 8.32 -38.98 -0.32 -1.34 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.27 7.30 -51.93 -0.38 0.89 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.41 8.08 8.06 -40.82 -0.33 7.75 16 34 H 0.42 4.76 8.30 -40.82 -0.34 4.42 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.86 7.29 -52.49 -0.38 0.48 16 38 H 0.18 1.45 8.06 -52.48 -0.42 1.02 16 39 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.16 2.58 5.98 -52.49 -0.31 2.26 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -32.32 362.11 -8.15 -40.47 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.15 Total: 10.87 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.02 Total: 2.58 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.32 Total: -53.94 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.16 Total: -20.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.52 Total: 16.28 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.41 Total: -1.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.32 -8.15 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122813322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.147 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds