Wall clock time and date at job start Wed Apr 1 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47226 * 2 1 4 4 C 1.50693 * 109.47395 * 240.00095 * 2 1 3 5 5 H 1.08006 * 120.00220 * 275.03573 * 4 2 1 6 6 C 1.37873 * 120.00296 * 95.03752 * 4 2 1 7 7 N 1.31514 * 120.00383 * 174.97419 * 6 4 2 8 8 Si 1.86801 * 119.99886 * 354.97371 * 6 4 2 9 9 H 1.48502 * 109.47022 * 94.95833 * 8 6 4 10 10 H 1.48506 * 109.47434 * 214.96017 * 8 6 4 11 11 H 1.48501 * 109.47192 * 334.95838 * 8 6 4 12 12 N 1.46505 * 109.46827 * 120.00109 * 2 1 3 13 13 C 1.34778 * 119.99701 * 274.99788 * 12 2 1 14 14 O 1.21355 * 120.00278 * 0.02562 * 13 12 2 15 15 C 1.49352 * 119.99820 * 180.02562 * 13 12 2 16 16 O 1.21385 * 119.99944 * 0.02562 * 15 13 12 17 17 N 1.34771 * 119.99986 * 180.27978 * 15 13 12 18 18 C 1.39754 * 120.00046 * 175.12546 * 17 15 13 19 19 C 1.39051 * 120.00567 * 214.83951 * 18 17 15 20 20 C 1.38183 * 120.21120 * 179.76495 * 19 18 17 21 21 C 1.38046 * 120.22470 * 0.50676 * 20 19 18 22 22 C 1.39574 * 120.00662 * 359.74602 * 21 20 19 23 23 C 1.47879 * 120.10264 * 180.02562 * 22 21 20 24 24 N 1.30225 * 125.46890 * 179.67248 * 23 22 21 25 25 C 1.31306 * 117.03980 * 179.76850 * 24 23 22 26 26 C 1.33726 * 115.84985 * 0.53113 * 25 24 23 27 27 S 1.76172 * 125.47662 * 359.97438 * 23 22 21 28 28 C 1.38653 * 120.00423 * 35.10708 * 18 17 15 29 29 H 1.08998 * 109.47226 * 184.99958 * 1 2 3 30 30 H 1.08993 * 109.47235 * 305.00557 * 1 2 3 31 31 H 1.09001 * 109.46405 * 65.00235 * 1 2 3 32 32 H 0.97002 * 120.00502 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00213 * 95.00103 * 12 2 1 34 34 H 0.97001 * 120.00170 * 355.11883 * 17 15 13 35 35 H 1.08004 * 119.89187 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.88939 * 180.23248 * 20 19 18 37 37 H 1.08001 * 119.99596 * 179.76320 * 21 20 19 38 38 H 1.08003 * 122.07514 * 180.24894 * 25 24 23 39 39 H 1.07993 * 125.89248 * 179.75781 * 26 25 24 40 40 H 1.07999 * 120.11521 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1350 -1.7855 -1.2292 6 6 2.3611 0.0122 -2.3577 7 7 2.8921 -0.5951 -3.3964 8 14 2.0521 1.8537 -2.4098 9 1 3.2898 2.5746 -2.0177 10 1 1.6624 2.2516 -3.7865 11 1 0.9583 2.1990 -1.4665 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8580 1.1591 2.4118 15 6 2.6453 -0.7222 3.5765 16 8 2.9348 -1.8997 3.5218 17 7 2.7687 -0.0512 4.7388 18 6 3.1370 -0.7316 5.9027 19 6 2.6115 -0.3441 7.1304 20 6 2.9689 -1.0169 8.2832 21 6 3.8581 -2.0713 8.2252 22 6 4.3952 -2.4646 6.9984 23 6 5.3474 -3.5942 6.9337 24 7 5.9053 -4.0511 5.8493 25 6 6.7323 -5.0620 5.9838 26 6 6.8991 -5.5170 7.2301 27 16 5.9036 -4.5428 8.3101 28 6 4.0307 -1.7894 5.8341 29 1 -0.3633 -1.0237 0.0896 30 1 -0.3633 0.5895 0.8417 31 1 -0.3632 0.4343 -0.9314 32 1 3.1230 -0.0868 -4.1897 33 1 2.2490 -1.6318 1.1527 34 1 2.6019 0.9039 4.7676 35 1 1.9191 0.4831 7.1826 36 1 2.5547 -0.7140 9.2336 37 1 4.1379 -2.5921 9.1290 38 1 7.2424 -5.5019 5.1395 39 1 7.5347 -6.3391 7.5243 40 1 4.4437 -2.0890 4.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122813322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:57 Heat of formation + Delta-G solvation = -13.793400 kcal Electronic energy + Delta-G solvation = -26137.803914 eV Core-core repulsion = 22236.757168 eV Total energy + Delta-G solvation = -3901.046746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15748 -40.79941 -40.19066 -39.17936 -37.10919 -36.06810 -34.42594 -33.17549 -31.83872 -31.03402 -30.23699 -27.37157 -26.58377 -26.35339 -24.04465 -23.26278 -22.18196 -21.38888 -20.88132 -19.99796 -19.43060 -18.63936 -18.12381 -17.59484 -17.28534 -17.02862 -16.87729 -16.46394 -15.98262 -15.81703 -15.57158 -15.17285 -15.05320 -14.91987 -14.58357 -14.45572 -14.31114 -14.05766 -13.82727 -13.36027 -13.19299 -13.10486 -12.84374 -12.75770 -12.47351 -12.38891 -12.32677 -11.83681 -11.69054 -11.27706 -10.91627 -10.78640 -10.76147 -10.64552 -10.29563 -10.07413 -9.50316 -9.13199 -8.41220 -6.50189 -0.80920 -0.05014 0.24822 0.49408 0.57031 0.66835 1.23628 1.34753 1.36126 1.47271 1.86787 2.09241 2.26966 2.59456 2.78040 2.99037 3.02957 3.42509 3.83699 3.98607 4.09693 4.26057 4.31680 4.36097 4.38713 4.43811 4.49232 4.69631 4.73912 4.85694 4.99897 5.09662 5.16449 5.20182 5.23545 5.33677 5.40942 5.41552 5.50593 5.82097 5.88224 6.07550 6.48464 6.56478 6.70750 6.74026 6.94113 7.18746 8.73900 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.002421 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.110623 B =11561.099383 C =12962.348327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.045 0.955 4 C -0.536 4.536 5 H 0.050 0.950 6 C 0.030 3.970 7 N -0.930 5.930 8 Si 0.931 3.069 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.239 1.239 12 N -0.670 5.670 13 C 0.500 3.500 14 O -0.551 6.551 15 C 0.512 3.488 16 O -0.519 6.519 17 N -0.633 5.633 18 C 0.121 3.879 19 C -0.112 4.112 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.032 4.032 23 C 0.086 3.914 24 N -0.504 5.504 25 C 0.014 3.986 26 C -0.237 4.237 27 S 0.136 5.864 28 C -0.102 4.102 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.272 0.728 33 H 0.409 0.591 34 H 0.434 0.566 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.151 0.849 38 H 0.188 0.812 39 H 0.214 0.786 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -3.275 30.900 31.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.131 3.869 3 H 0.063 0.937 4 C -0.575 4.575 5 H 0.068 0.932 6 C -0.171 4.171 7 N -0.568 5.568 8 Si 0.754 3.246 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.163 1.163 12 N -0.320 5.320 13 C 0.280 3.720 14 O -0.431 6.431 15 C 0.294 3.706 16 O -0.394 6.394 17 N -0.281 5.281 18 C 0.028 3.972 19 C -0.133 4.133 20 C -0.103 4.103 21 C -0.125 4.125 22 C -0.036 4.036 23 C -0.187 4.187 24 N -0.218 5.218 25 C -0.137 4.137 26 C -0.376 4.376 27 S 0.391 5.609 28 C -0.126 4.126 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.245 0.755 34 H 0.274 0.726 35 H 0.182 0.818 36 H 0.197 0.803 37 H 0.169 0.831 38 H 0.205 0.795 39 H 0.231 0.769 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.067 -3.086 31.200 31.502 hybrid contribution 0.818 -0.087 -1.968 2.133 sum 3.885 -3.173 29.232 29.659 Atomic orbital electron populations 1.22166 0.96052 1.01343 1.00762 1.19113 0.92646 0.93368 0.81779 0.93743 1.21148 1.45065 0.94709 0.96530 0.93180 1.25734 0.93067 1.03225 0.95069 1.70008 1.41888 1.38776 1.06085 0.85983 0.80150 0.79878 0.78580 1.20004 1.20003 1.16254 1.46437 1.61827 1.14990 1.08713 1.20045 0.80111 0.87017 0.84829 1.90692 1.51480 1.15716 1.85169 1.20360 0.78567 0.86716 0.84991 1.90799 1.47468 1.16420 1.84686 1.43008 1.65890 1.13478 1.05691 1.17870 0.96960 0.95809 0.86565 1.21489 0.99738 1.02155 0.89949 1.21305 0.95965 0.93711 0.99346 1.21472 0.97386 0.98084 0.95545 1.17876 0.97237 0.94006 0.94511 1.26088 1.01203 1.00398 0.91027 1.66551 1.10717 1.13647 1.30885 1.22037 0.98434 0.94347 0.98879 1.27537 1.07258 1.07459 0.95311 1.84477 1.38915 1.25791 1.11725 1.21266 0.96292 0.96146 0.98853 0.92522 0.93553 0.92165 0.91861 0.75527 0.72585 0.81834 0.80345 0.83112 0.79532 0.76892 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 9.17 71.98 0.66 -5.31 16 2 C 0.23 10.95 2.10 44.24 0.09 11.04 16 3 H 0.04 2.18 5.03 -2.39 -0.01 2.17 16 4 C -0.54 -29.47 9.05 25.60 0.23 -29.24 16 5 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 6 C 0.03 1.68 5.47 84.65 0.46 2.14 16 7 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 8 Si 0.93 43.03 26.57 68.60 1.82 44.85 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.24 -10.33 6.19 99.48 0.62 -9.72 16 12 N -0.67 -28.35 5.06 -447.53 -2.27 -30.62 16 13 C 0.50 19.25 7.85 87.24 0.68 19.93 16 14 O -0.55 -22.23 16.14 -3.26 -0.05 -22.28 16 15 C 0.51 17.39 7.73 87.24 0.67 18.07 16 16 O -0.52 -20.14 13.91 -3.36 -0.05 -20.18 16 17 N -0.63 -16.50 5.32 -304.93 -1.62 -18.12 16 18 C 0.12 2.91 6.29 38.17 0.24 3.15 16 19 C -0.11 -1.70 9.96 22.45 0.22 -1.47 16 20 C -0.09 -0.97 10.02 22.21 0.22 -0.75 16 21 C -0.10 -1.58 9.60 22.55 0.22 -1.37 16 22 C -0.03 -0.76 5.87 -20.11 -0.12 -0.88 16 23 C 0.09 2.12 7.35 87.49 0.64 2.76 16 24 N -0.50 -14.47 10.14 -189.83 -1.92 -16.39 16 25 C 0.01 0.29 11.25 83.75 0.94 1.24 16 26 C -0.24 -3.55 11.35 66.79 0.76 -2.79 16 27 S 0.14 2.10 22.39 -56.49 -1.26 0.84 16 28 C -0.10 -2.94 8.32 22.66 0.19 -2.75 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.46 7.30 -2.39 -0.02 2.44 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.41 17.04 8.06 -92.71 -0.75 16.30 16 34 H 0.43 9.25 8.30 -92.71 -0.77 8.48 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 37 H 0.15 1.46 7.29 -2.91 -0.02 1.44 16 38 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.12 4.28 5.98 -2.91 -0.02 4.27 16 Total: -1.00 -74.39 362.11 0.59 -73.80 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.48 Total: 29.99 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 6.12 Total: 13.78 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.51 Total: -120.79 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.10 Total: -42.47 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.82 Total: 44.85 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.26 Total: 0.84 kcal Total: -74.39 0.59 -73.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122813322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.006 kcal (2) G-P(sol) polarization free energy of solvation -74.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds