Wall clock time and date at job start Wed Apr 1 2020 02:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21364 * 120.00310 * 0.02562 * 13 12 2 15 15 C 1.49308 * 119.99872 * 179.97438 * 13 12 2 16 16 O 1.21392 * 120.00310 * 0.02562 * 15 13 12 17 17 N 1.34770 * 120.00124 * 180.02562 * 15 13 12 18 18 C 1.39181 * 120.00251 * 180.02562 * 17 15 13 19 19 C 1.35722 * 127.15975 * 179.71155 * 18 17 15 20 20 C 1.38636 * 114.55455 * 179.80150 * 19 18 17 21 21 C 1.48389 * 121.72507 * 180.21340 * 20 19 18 22 22 C 1.39345 * 120.11499 * 0.02562 * 21 20 19 23 23 C 1.38020 * 119.87420 * 179.73928 * 22 21 20 24 24 C 1.38322 * 120.11921 * 0.51437 * 23 22 21 25 25 C 1.38329 * 120.24557 * 359.76465 * 24 23 22 26 26 C 1.38011 * 120.12340 * 359.97438 * 25 24 23 27 27 N 1.30896 * 116.55817 * 0.51506 * 20 19 18 28 28 S 1.69549 * 107.29457 * 359.72092 * 27 20 19 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 34 34 H 0.97002 * 120.00402 * 0.02562 * 17 15 13 35 35 H 1.08007 * 122.72603 * 359.95769 * 19 18 17 36 36 H 1.08000 * 120.06508 * 0.02562 * 22 21 20 37 37 H 1.08001 * 119.94288 * 180.27804 * 23 22 21 38 38 H 1.08003 * 119.88073 * 179.73917 * 24 23 22 39 39 H 1.07997 * 119.93700 * 180.02562 * 25 24 23 40 40 H 1.07997 * 120.06513 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8588 1.1596 -2.4115 15 6 2.6452 -0.7216 -3.5761 16 8 2.9340 -1.8995 -3.5218 17 7 2.7744 -0.0491 -4.7369 18 6 3.2384 -0.7051 -5.8734 19 6 3.4180 -0.1753 -7.1099 20 6 3.8993 -1.0681 -8.0549 21 6 4.1581 -0.6564 -9.4568 22 6 3.9186 0.6573 -9.8552 23 6 4.1662 1.0362 -11.1591 24 6 4.6411 0.1121 -12.0723 25 6 4.8751 -1.1947 -11.6836 26 6 4.6361 -1.5832 -10.3810 27 7 4.1079 -2.2948 -7.6483 28 16 3.6963 -2.3578 -6.0048 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7089 1.1611 3.4845 33 1 2.2490 -1.6317 -1.1527 34 1 2.5441 0.8921 -4.7804 35 1 3.2058 0.8588 -7.3385 36 1 3.5443 1.3787 -9.1440 37 1 3.9852 2.0552 -11.4680 38 1 4.8295 0.4118 -13.0926 39 1 5.2463 -1.9120 -12.4006 40 1 4.8195 -2.6036 -10.0785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122925439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:08 Heat of formation + Delta-G solvation = -1.811554 kcal Electronic energy + Delta-G solvation = -25530.658943 eV Core-core repulsion = 21630.131768 eV Total energy + Delta-G solvation = -3900.527174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87504 -40.01605 -38.60148 -38.07688 -35.76872 -34.90816 -32.55310 -31.46863 -31.37957 -30.23444 -29.28665 -25.90094 -25.39585 -24.48556 -22.93347 -22.05084 -21.59591 -20.40148 -19.74291 -18.65397 -18.24026 -17.34333 -16.60111 -16.48961 -16.07879 -15.83748 -15.43725 -15.26538 -14.80334 -14.64123 -14.48538 -14.22006 -13.77830 -13.76582 -13.42874 -13.18598 -12.94142 -12.59301 -11.95507 -11.85584 -11.71026 -11.66752 -11.57756 -11.27356 -11.22664 -11.07784 -10.92299 -10.50014 -10.38333 -10.31614 -9.67038 -9.40354 -9.26813 -9.24421 -8.81675 -8.71825 -8.36825 -8.28815 -6.25074 -4.35348 0.25201 0.81849 1.03889 1.09058 1.61824 1.71498 2.27294 2.44249 3.20827 3.25990 3.27741 3.39782 3.60299 3.77217 4.24995 4.28941 4.55667 4.65572 4.76665 4.84723 4.91100 5.06616 5.08171 5.11257 5.24597 5.31061 5.61341 5.68567 5.81304 6.03712 6.13028 6.18272 6.54139 6.59919 6.61836 6.63406 6.72087 6.90466 7.02954 7.18593 7.42763 7.54213 7.69385 7.94931 8.24363 8.43619 8.72311 9.32015 10.80864 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.001877 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.282220 B =14910.486841 C =15501.573073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.056 0.944 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.906 3.094 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.662 5.662 13 C 0.501 3.499 14 O -0.529 6.529 15 C 0.501 3.499 16 O -0.486 6.486 17 N -0.604 5.604 18 C 0.051 3.949 19 C -0.252 4.252 20 C 0.178 3.822 21 C -0.029 4.029 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.082 4.082 27 N -0.496 5.496 28 S 0.366 5.634 29 H 0.096 0.904 30 H 0.017 0.983 31 H 0.031 0.969 32 H 0.267 0.733 33 H 0.404 0.596 34 H 0.433 0.567 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 -1.037 -25.108 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.074 0.926 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.733 3.267 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.310 5.310 13 C 0.279 3.721 14 O -0.408 6.408 15 C 0.283 3.717 16 O -0.357 6.357 17 N -0.251 5.251 18 C -0.176 4.176 19 C -0.290 4.290 20 C 0.004 3.996 21 C -0.033 4.033 22 C -0.114 4.114 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.102 4.102 27 N -0.322 5.322 28 S 0.518 5.482 29 H 0.114 0.886 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.273 0.727 35 H 0.177 0.823 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.618 -3.052 -24.287 25.114 hybrid contribution -0.103 1.522 0.382 1.572 sum 5.515 -1.531 -23.905 24.580 Atomic orbital electron populations 1.22111 0.97618 0.99704 1.01338 1.19050 0.91576 0.94186 0.79077 0.92608 1.21128 1.33110 1.13628 0.89916 0.91699 1.24877 0.94610 0.94907 0.99127 1.69875 1.35474 1.22256 1.24323 0.86427 0.79240 0.79618 0.81394 1.21042 1.20000 1.20053 1.46554 1.60761 1.14644 1.09087 1.19272 0.81566 0.87225 0.84046 1.90763 1.50738 1.14931 1.84339 1.21429 0.78143 0.87258 0.84856 1.90728 1.46077 1.15245 1.83664 1.42517 1.61536 1.15253 1.05746 1.22780 1.01896 1.02288 0.90625 1.20748 1.13914 1.03872 0.90436 1.19390 0.96912 0.88858 0.94425 1.18178 1.01608 0.94007 0.89547 1.21253 0.98817 0.94869 0.96500 1.21087 1.00007 0.99849 0.93166 1.21289 0.98480 0.93512 0.99655 1.21142 1.00685 0.96434 0.96014 1.21308 0.96570 0.99790 0.92569 1.76677 1.26830 1.20571 1.08074 1.85042 1.56898 1.01555 1.04723 0.88568 0.96427 0.94971 0.92294 0.76119 0.72674 0.82323 0.85351 0.85558 0.85890 0.85675 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.26 37.16 0.34 -3.13 16 2 C 0.26 6.26 2.56 -69.09 -0.18 6.09 16 3 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.69 11.32 55.43 0.63 -23.07 16 8 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.66 -13.25 5.06 -55.41 -0.28 -13.53 16 13 C 0.50 9.26 7.85 -11.65 -0.09 9.17 16 14 O -0.53 -10.81 16.14 5.48 0.09 -10.73 16 15 C 0.50 7.78 7.85 -11.65 -0.09 7.69 16 16 O -0.49 -8.00 14.20 5.46 0.08 -7.92 16 17 N -0.60 -7.70 5.40 -11.88 -0.06 -7.77 16 18 C 0.05 0.64 7.25 -15.11 -0.11 0.53 16 19 C -0.25 -2.73 9.58 -40.34 -0.39 -3.12 16 20 C 0.18 2.09 6.64 -83.94 -0.56 1.54 16 21 C -0.03 -0.29 5.88 -104.89 -0.62 -0.91 16 22 C -0.09 -0.77 9.47 -39.25 -0.37 -1.14 16 23 C -0.12 -0.85 10.03 -39.63 -0.40 -1.25 16 24 C -0.11 -0.74 10.04 -39.52 -0.40 -1.14 16 25 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 26 C -0.08 -0.78 9.61 -39.25 -0.38 -1.16 16 27 N -0.50 -6.55 11.34 32.14 0.36 -6.18 16 28 S 0.37 4.90 21.03 -107.50 -2.26 2.64 16 29 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.40 7.46 8.01 -40.82 -0.33 7.14 16 34 H 0.43 4.70 8.29 -40.82 -0.34 4.36 16 35 H 0.16 1.26 6.59 -52.48 -0.35 0.92 16 36 H 0.13 0.82 6.45 -52.49 -0.34 0.48 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.13 1.28 7.64 -52.49 -0.40 0.88 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -29.10 362.56 -9.14 -38.23 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.11 Total: 8.32 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -4.02 Total: -0.48 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.65 Total: -50.54 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -2.26 Total: 2.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.10 -9.14 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122925439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.423 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds