Wall clock time and date at job start Wed Apr 1 2020 02:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21364 * 120.00310 * 0.02562 * 13 12 2 15 15 C 1.49308 * 119.99872 * 179.97438 * 13 12 2 16 16 O 1.21392 * 120.00310 * 0.02562 * 15 13 12 17 17 N 1.34770 * 120.00124 * 180.02562 * 15 13 12 18 18 C 1.39181 * 120.00251 * 180.02562 * 17 15 13 19 19 C 1.35722 * 127.15975 * 179.71155 * 18 17 15 20 20 C 1.38636 * 114.55455 * 179.80150 * 19 18 17 21 21 C 1.48389 * 121.72507 * 180.21340 * 20 19 18 22 22 C 1.39345 * 120.11499 * 0.02562 * 21 20 19 23 23 C 1.38020 * 119.87420 * 179.73928 * 22 21 20 24 24 C 1.38322 * 120.11921 * 0.51437 * 23 22 21 25 25 C 1.38329 * 120.24557 * 359.76465 * 24 23 22 26 26 C 1.38011 * 120.12340 * 359.97438 * 25 24 23 27 27 N 1.30896 * 116.55817 * 0.51506 * 20 19 18 28 28 S 1.69549 * 107.29457 * 359.72092 * 27 20 19 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 34 34 H 0.97002 * 120.00402 * 0.02562 * 17 15 13 35 35 H 1.08007 * 122.72603 * 359.95769 * 19 18 17 36 36 H 1.08000 * 120.06508 * 0.02562 * 22 21 20 37 37 H 1.08001 * 119.94288 * 180.27804 * 23 22 21 38 38 H 1.08003 * 119.88073 * 179.73917 * 24 23 22 39 39 H 1.07997 * 119.93700 * 180.02562 * 25 24 23 40 40 H 1.07997 * 120.06513 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8588 1.1596 -2.4115 15 6 2.6452 -0.7216 -3.5761 16 8 2.9340 -1.8995 -3.5218 17 7 2.7744 -0.0491 -4.7369 18 6 3.2384 -0.7051 -5.8734 19 6 3.4180 -0.1753 -7.1099 20 6 3.8993 -1.0681 -8.0549 21 6 4.1581 -0.6564 -9.4568 22 6 3.9186 0.6573 -9.8552 23 6 4.1662 1.0362 -11.1591 24 6 4.6411 0.1121 -12.0723 25 6 4.8751 -1.1947 -11.6836 26 6 4.6361 -1.5832 -10.3810 27 7 4.1079 -2.2948 -7.6483 28 16 3.6963 -2.3578 -6.0048 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7089 1.1611 3.4845 33 1 2.2490 -1.6317 -1.1527 34 1 2.5441 0.8921 -4.7804 35 1 3.2058 0.8588 -7.3385 36 1 3.5443 1.3787 -9.1440 37 1 3.9852 2.0552 -11.4680 38 1 4.8295 0.4118 -13.0926 39 1 5.2463 -1.9120 -12.4006 40 1 4.8195 -2.6036 -10.0785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122925439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:07 Heat of formation + Delta-G solvation = -20.044839 kcal Electronic energy + Delta-G solvation = -25531.449597 eV Core-core repulsion = 21630.131768 eV Total energy + Delta-G solvation = -3901.317829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16128 -40.83076 -39.97473 -38.95501 -37.19937 -36.36520 -34.38955 -32.15301 -32.04392 -31.28109 -30.95506 -27.40565 -27.01448 -25.51327 -23.66778 -23.07145 -22.81885 -21.72902 -21.03514 -19.96521 -19.34226 -18.23828 -17.99455 -17.74262 -17.33662 -17.09068 -16.98955 -16.11705 -16.07941 -15.78399 -15.45718 -15.20090 -15.01781 -14.96607 -14.46310 -14.35478 -13.95283 -13.79381 -13.64704 -13.17093 -13.04188 -12.92027 -12.76378 -12.74162 -12.48969 -12.32881 -12.30140 -12.16920 -11.90708 -11.40163 -11.18435 -10.83113 -10.63364 -10.45733 -10.05581 -9.84887 -9.81160 -9.20503 -8.21126 -6.38157 -0.71249 -0.05807 0.05969 0.47981 0.51564 0.67512 1.09455 1.46898 1.47303 1.55428 1.60077 1.99675 2.35110 2.52504 2.97861 3.10072 3.32033 3.46579 3.98491 3.99332 4.13574 4.15976 4.35885 4.40188 4.58647 4.63310 4.68647 4.81121 4.87037 4.99587 5.03982 5.16492 5.25302 5.31800 5.34734 5.51296 5.56452 5.61932 5.62607 5.77938 5.79382 6.02177 6.06302 6.19643 6.56689 6.65024 6.97611 7.33622 8.84610 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.001877 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.282220 B =14910.486841 C =15501.573073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.019 0.981 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.970 3.030 9 H -0.284 1.284 10 H -0.267 1.267 11 H -0.272 1.272 12 N -0.665 5.665 13 C 0.505 3.495 14 O -0.549 6.549 15 C 0.512 3.488 16 O -0.496 6.496 17 N -0.588 5.588 18 C 0.040 3.960 19 C -0.232 4.232 20 C 0.176 3.824 21 C -0.056 4.056 22 C -0.096 4.096 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.099 4.099 27 N -0.509 5.509 28 S 0.326 5.674 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.268 0.732 33 H 0.412 0.588 34 H 0.443 0.557 35 H 0.193 0.807 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -0.441 -27.228 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.037 0.963 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.795 3.205 9 H -0.209 1.209 10 H -0.192 1.192 11 H -0.197 1.197 12 N -0.315 5.315 13 C 0.284 3.716 14 O -0.428 6.428 15 C 0.294 3.706 16 O -0.368 6.368 17 N -0.235 5.235 18 C -0.187 4.187 19 C -0.269 4.269 20 C 0.002 3.998 21 C -0.061 4.061 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.120 4.120 27 N -0.335 5.335 28 S 0.478 5.522 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.248 0.752 34 H 0.285 0.715 35 H 0.210 0.790 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.172 -2.468 -26.452 27.274 hybrid contribution -0.227 1.423 0.778 1.638 sum 5.944 -1.045 -25.674 26.374 Atomic orbital electron populations 1.21939 0.97277 0.99909 1.00483 1.18672 0.91801 0.92527 0.80407 0.96279 1.21448 1.33177 1.13861 0.90663 0.91072 1.25693 0.94741 0.95535 1.01990 1.70001 1.36447 1.23495 1.24911 0.85424 0.78636 0.78684 0.77780 1.20931 1.19199 1.19732 1.46276 1.61434 1.14954 1.08816 1.19611 0.80554 0.86901 0.84497 1.90748 1.51281 1.15929 1.84883 1.20590 0.78546 0.86854 0.84656 1.90745 1.46789 1.15458 1.83833 1.42218 1.60845 1.15486 1.04982 1.22765 1.03215 1.01767 0.90919 1.21061 1.11526 1.05086 0.89179 1.19857 0.95833 0.88475 0.95586 1.18300 1.03740 0.95313 0.88707 1.21514 0.98311 0.94157 0.97623 1.21467 0.98991 1.01205 0.92554 1.21691 0.96869 0.92912 1.01004 1.21398 1.00388 0.97543 0.95459 1.21362 0.97525 0.99385 0.93682 1.76750 1.27676 1.21635 1.07414 1.85104 1.58175 1.03127 1.05749 0.90760 0.95851 0.94107 0.92293 0.75168 0.71472 0.79038 0.83572 0.82867 0.83158 0.83883 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 9.26 71.98 0.67 -5.82 16 2 C 0.27 13.07 2.56 44.24 0.11 13.18 16 3 H 0.02 1.08 7.58 -2.39 -0.02 1.06 16 4 C -0.55 -28.25 8.73 25.60 0.22 -28.03 16 5 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -49.63 11.32 21.45 0.24 -49.39 16 8 Si 0.97 40.91 29.54 68.60 2.03 42.93 16 9 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 N -0.67 -26.83 5.06 -447.59 -2.27 -29.10 16 13 C 0.51 18.67 7.85 87.23 0.68 19.35 16 14 O -0.55 -22.51 16.14 -3.29 -0.05 -22.56 16 15 C 0.51 15.68 7.85 87.23 0.68 16.37 16 16 O -0.50 -16.25 14.20 -3.38 -0.05 -16.29 16 17 N -0.59 -14.35 5.40 -309.86 -1.67 -16.02 16 18 C 0.04 0.96 7.25 82.94 0.60 1.56 16 19 C -0.23 -4.57 9.58 21.78 0.21 -4.36 16 20 C 0.18 3.98 6.64 42.08 0.28 4.26 16 21 C -0.06 -1.06 5.88 -20.04 -0.12 -1.18 16 22 C -0.10 -1.29 9.47 22.48 0.21 -1.08 16 23 C -0.12 -1.27 10.03 22.24 0.22 -1.05 16 24 C -0.11 -1.07 10.04 22.31 0.22 -0.84 16 25 C -0.13 -1.70 10.03 22.24 0.22 -1.47 16 26 C -0.10 -1.82 9.61 22.48 0.22 -1.60 16 27 N -0.51 -13.52 11.34 -52.24 -0.59 -14.12 16 28 S 0.33 8.81 21.03 -56.49 -1.19 7.62 16 29 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 30 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.41 15.24 8.01 -92.70 -0.74 14.50 16 34 H 0.44 8.92 8.29 -92.71 -0.77 8.15 16 35 H 0.19 2.38 6.59 -2.91 -0.02 2.36 16 36 H 0.15 1.32 6.45 -2.91 -0.02 1.31 16 37 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 39 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.12 2.38 7.64 -2.91 -0.02 2.36 16 Total: -1.00 -63.43 362.56 0.95 -62.47 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.39 Total: 23.61 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.89 Total: 10.84 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -4.29 Total: -108.62 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.10 Total: -38.86 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 8.81 SS G_CDS: -1.19 Total: 7.62 kcal Total: -63.43 0.95 -62.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122925439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.428 kcal (2) G-P(sol) polarization free energy of solvation -63.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds