Wall clock time and date at job start Wed Apr 1 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21367 * 119.99805 * 359.97438 * 13 12 2 15 15 C 1.49306 * 120.00291 * 180.02562 * 13 12 2 16 16 O 1.21391 * 119.99550 * 359.97438 * 15 13 12 17 17 N 1.34770 * 120.00039 * 179.97438 * 15 13 12 18 18 C 1.39187 * 119.99990 * 179.97438 * 17 15 13 19 19 C 1.35717 * 127.15914 * 179.71432 * 18 17 15 20 20 C 1.38638 * 114.55319 * 179.80281 * 19 18 17 21 21 C 1.48384 * 121.71808 * 180.21032 * 20 19 18 22 22 C 1.39341 * 120.12403 * 0.02562 * 21 20 19 23 23 C 1.38021 * 119.87230 * 179.74341 * 22 21 20 24 24 C 1.38321 * 120.12665 * 0.53169 * 23 22 21 25 25 C 1.38319 * 120.23978 * 359.73974 * 24 23 22 26 26 C 1.38014 * 120.12694 * 359.97438 * 25 24 23 27 27 N 1.30889 * 116.55786 * 0.51004 * 20 19 18 28 28 S 1.69546 * 107.29717 * 359.72649 * 27 20 19 29 29 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 30 30 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 31 31 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 34 34 H 0.96996 * 120.00354 * 0.02562 * 17 15 13 35 35 H 1.08007 * 122.72269 * 359.97438 * 19 18 17 36 36 H 1.07992 * 120.05868 * 0.02562 * 22 21 20 37 37 H 1.08005 * 119.93558 * 180.26870 * 23 22 21 38 38 H 1.07993 * 119.87436 * 179.72040 * 24 23 22 39 39 H 1.08006 * 119.93706 * 180.02562 * 25 24 23 40 40 H 1.08003 * 120.06293 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8588 1.1593 2.4116 15 6 2.6453 -0.7221 3.5761 16 8 2.9341 -1.8999 3.5214 17 7 2.7744 -0.0497 4.7369 18 6 3.2384 -0.7059 5.8733 19 6 3.4282 -0.1736 7.1072 20 6 3.8985 -1.0694 8.0550 21 6 4.1572 -0.6577 9.4569 22 6 3.9279 0.6584 9.8529 23 6 4.1653 1.0345 11.1595 24 6 4.6404 0.1104 12.0725 25 6 4.8751 -1.1961 11.6834 26 6 4.6356 -1.5846 10.3809 27 7 4.1082 -2.2956 7.6480 28 16 3.6975 -2.3583 6.0042 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9111 -0.5221 -4.4375 33 1 2.2491 -1.6318 1.1526 34 1 2.5433 0.8913 4.7807 35 1 3.2265 0.8632 7.3332 36 1 3.5609 1.3817 9.1399 37 1 3.9838 2.0533 11.4686 38 1 4.8290 0.4101 13.0927 39 1 5.2456 -1.9137 12.4005 40 1 4.8188 -2.6051 10.0784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122925676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:11 Heat of formation + Delta-G solvation = 7.384347 kcal Electronic energy + Delta-G solvation = -25600.034882 eV Core-core repulsion = 21699.906472 eV Total energy + Delta-G solvation = -3900.128410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98084 -40.05828 -38.75678 -38.14417 -35.90261 -35.07685 -32.55586 -31.49642 -31.41223 -30.38075 -30.10528 -26.05728 -25.34585 -24.57690 -22.97415 -22.09966 -21.69872 -20.45472 -19.90086 -18.72942 -18.31227 -17.37484 -16.77937 -16.62204 -16.18788 -15.96663 -15.60897 -15.41546 -14.83182 -14.73110 -14.61636 -14.25960 -13.88767 -13.78954 -13.47364 -13.22784 -13.10673 -12.95356 -12.36113 -12.05196 -11.95159 -11.77145 -11.72723 -11.61080 -11.50041 -11.28590 -10.95334 -10.45056 -10.33435 -9.84767 -9.70075 -9.47617 -9.42075 -9.29119 -8.93819 -8.86521 -8.53550 -8.39492 -6.31537 -4.36532 0.21216 0.77148 0.99744 1.06725 1.52102 1.66573 2.17659 2.40198 3.14145 3.24963 3.27082 3.28180 3.57736 3.64037 4.20060 4.24482 4.52910 4.63243 4.65454 4.74041 4.86923 5.01710 5.03367 5.08359 5.21257 5.26654 5.58342 5.65432 5.76145 6.00880 6.10497 6.10961 6.14828 6.16097 6.33295 6.47162 6.56674 6.59536 6.60552 6.80975 6.98746 7.26420 7.28246 7.80610 8.24962 8.30066 8.67451 9.25943 10.80212 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.032234 B = 0.001940 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.431342 B =14432.308272 C =15086.118768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.542 4.542 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.262 1.262 11 H -0.292 1.292 12 N -0.655 5.655 13 C 0.504 3.496 14 O -0.530 6.530 15 C 0.502 3.498 16 O -0.482 6.482 17 N -0.603 5.603 18 C 0.049 3.951 19 C -0.251 4.251 20 C 0.177 3.823 21 C -0.029 4.029 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.082 4.082 27 N -0.495 5.495 28 S 0.369 5.631 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.269 0.731 33 H 0.411 0.589 34 H 0.433 0.567 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 2.409 28.037 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.132 3.868 3 H 0.074 0.926 4 C -0.580 4.580 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.522 5.522 8 Si 0.714 3.286 9 H -0.201 1.201 10 H -0.187 1.187 11 H -0.219 1.219 12 N -0.304 5.304 13 C 0.282 3.718 14 O -0.409 6.409 15 C 0.284 3.716 16 O -0.353 6.353 17 N -0.250 5.250 18 C -0.178 4.178 19 C -0.288 4.288 20 C 0.004 3.996 21 C -0.034 4.034 22 C -0.115 4.115 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.102 4.102 27 N -0.320 5.320 28 S 0.520 5.480 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.247 0.753 34 H 0.273 0.727 35 H 0.177 0.823 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.223 0.241 27.160 27.351 hybrid contribution -0.978 2.679 0.159 2.857 sum 2.245 2.921 27.319 27.566 Atomic orbital electron populations 1.22477 0.98511 1.01448 0.99742 1.19379 0.90673 0.94829 0.81888 0.92647 1.20963 1.33912 1.14894 0.88187 0.89781 1.24814 0.95417 0.96711 0.95411 1.69855 1.44281 1.39928 0.98126 0.86887 0.80593 0.83422 0.77676 1.20130 1.18656 1.21913 1.46167 1.60922 1.14906 1.08420 1.19299 0.81248 0.87137 0.84108 1.90761 1.50705 1.14936 1.84474 1.21222 0.78393 0.87252 0.84749 1.90750 1.45829 1.15129 1.83573 1.42464 1.61575 1.15229 1.05735 1.22771 1.02068 1.02329 0.90611 1.20748 1.13877 1.03718 0.90476 1.19389 0.96975 0.88822 0.94412 1.18174 1.01674 0.93975 0.89558 1.21245 0.98895 0.94830 0.96480 1.21086 1.00041 0.99869 0.93120 1.21288 0.98414 0.93521 0.99684 1.21145 1.00657 0.96436 0.96013 1.21314 0.96494 0.99821 0.92583 1.76678 1.26646 1.20667 1.08039 1.85074 1.56637 1.01501 1.04750 0.94328 0.92886 0.92321 0.92053 0.75349 0.72702 0.82325 0.85376 0.85563 0.85876 0.85652 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.96 37.16 0.33 -3.06 16 2 C 0.23 5.24 2.15 -69.08 -0.15 5.09 16 3 H 0.06 1.33 6.63 -51.93 -0.34 0.98 16 4 C -0.54 -14.03 9.31 -34.44 -0.32 -14.35 16 5 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.40 13.96 55.43 0.77 -24.63 16 8 Si 0.88 20.59 24.37 -169.99 -4.14 16.44 16 9 H -0.27 -6.18 6.88 56.52 0.39 -5.79 16 10 H -0.26 -5.94 6.52 56.52 0.37 -5.57 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.66 -12.44 5.06 -55.41 -0.28 -12.72 16 13 C 0.50 8.71 7.85 -11.65 -0.09 8.62 16 14 O -0.53 -10.01 16.14 5.48 0.09 -9.92 16 15 C 0.50 7.39 7.85 -11.66 -0.09 7.30 16 16 O -0.48 -7.65 14.20 5.46 0.08 -7.58 16 17 N -0.60 -7.24 5.40 -11.88 -0.06 -7.30 16 18 C 0.05 0.59 7.25 -15.11 -0.11 0.48 16 19 C -0.25 -2.60 9.58 -40.34 -0.39 -2.98 16 20 C 0.18 2.03 6.64 -83.94 -0.56 1.47 16 21 C -0.03 -0.29 5.88 -104.90 -0.62 -0.91 16 22 C -0.09 -0.74 9.47 -39.25 -0.37 -1.11 16 23 C -0.12 -0.82 10.03 -39.63 -0.40 -1.21 16 24 C -0.11 -0.71 10.04 -39.52 -0.40 -1.11 16 25 C -0.12 -0.91 10.03 -39.63 -0.40 -1.31 16 26 C -0.08 -0.76 9.61 -39.25 -0.38 -1.14 16 27 N -0.49 -6.37 11.34 32.13 0.36 -6.01 16 28 S 0.37 4.79 21.03 -107.50 -2.26 2.53 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.14 3.28 -51.93 -0.17 0.97 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.41 7.34 8.01 -40.82 -0.33 7.01 16 34 H 0.43 4.32 8.29 -40.82 -0.34 3.98 16 35 H 0.16 1.18 6.59 -52.48 -0.35 0.84 16 36 H 0.13 0.77 6.45 -52.49 -0.34 0.43 16 37 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 38 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.13 1.25 7.64 -52.48 -0.40 0.85 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -30.29 355.73 -8.09 -38.38 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.98 Total: 7.57 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -4.03 Total: -2.13 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.79 Total: -50.66 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.17 Total: -17.50 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.14 Total: 16.44 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.26 Total: 2.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.29 -8.09 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122925676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.761 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds