Wall clock time and date at job start Wed Apr 1 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21367 * 119.99805 * 359.97438 * 13 12 2 15 15 C 1.49306 * 120.00291 * 180.02562 * 13 12 2 16 16 O 1.21391 * 119.99550 * 359.97438 * 15 13 12 17 17 N 1.34770 * 120.00039 * 179.97438 * 15 13 12 18 18 C 1.39187 * 119.99990 * 179.97438 * 17 15 13 19 19 C 1.35717 * 127.15914 * 179.71432 * 18 17 15 20 20 C 1.38638 * 114.55319 * 179.80281 * 19 18 17 21 21 C 1.48384 * 121.71808 * 180.21032 * 20 19 18 22 22 C 1.39341 * 120.12403 * 0.02562 * 21 20 19 23 23 C 1.38021 * 119.87230 * 179.74341 * 22 21 20 24 24 C 1.38321 * 120.12665 * 0.53169 * 23 22 21 25 25 C 1.38319 * 120.23978 * 359.73974 * 24 23 22 26 26 C 1.38014 * 120.12694 * 359.97438 * 25 24 23 27 27 N 1.30889 * 116.55786 * 0.51004 * 20 19 18 28 28 S 1.69546 * 107.29717 * 359.72649 * 27 20 19 29 29 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 30 30 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 31 31 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 34 34 H 0.96996 * 120.00354 * 0.02562 * 17 15 13 35 35 H 1.08007 * 122.72269 * 359.97438 * 19 18 17 36 36 H 1.07992 * 120.05868 * 0.02562 * 22 21 20 37 37 H 1.08005 * 119.93558 * 180.26870 * 23 22 21 38 38 H 1.07993 * 119.87436 * 179.72040 * 24 23 22 39 39 H 1.08006 * 119.93706 * 180.02562 * 25 24 23 40 40 H 1.08003 * 120.06293 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8588 1.1593 2.4116 15 6 2.6453 -0.7221 3.5761 16 8 2.9341 -1.8999 3.5214 17 7 2.7744 -0.0497 4.7369 18 6 3.2384 -0.7059 5.8733 19 6 3.4282 -0.1736 7.1072 20 6 3.8985 -1.0694 8.0550 21 6 4.1572 -0.6577 9.4569 22 6 3.9279 0.6584 9.8529 23 6 4.1653 1.0345 11.1595 24 6 4.6404 0.1104 12.0725 25 6 4.8751 -1.1961 11.6834 26 6 4.6356 -1.5846 10.3809 27 7 4.1082 -2.2956 7.6480 28 16 3.6975 -2.3583 6.0042 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9111 -0.5221 -4.4375 33 1 2.2491 -1.6318 1.1526 34 1 2.5433 0.8913 4.7807 35 1 3.2265 0.8632 7.3332 36 1 3.5609 1.3817 9.1399 37 1 3.9838 2.0533 11.4686 38 1 4.8290 0.4101 13.0927 39 1 5.2456 -1.9137 12.4005 40 1 4.8188 -2.6051 10.0784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122925676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:10 Heat of formation + Delta-G solvation = -13.515466 kcal Electronic energy + Delta-G solvation = -25600.941166 eV Core-core repulsion = 21699.906472 eV Total energy + Delta-G solvation = -3901.034694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20040 -40.84167 -40.05193 -38.96099 -37.30439 -36.40219 -34.45922 -32.16939 -32.04991 -31.94660 -31.09245 -27.35078 -27.05981 -25.55868 -23.68460 -23.09539 -22.82419 -21.74974 -21.09119 -19.99145 -19.36756 -18.50288 -18.06221 -17.75568 -17.43431 -17.20016 -17.08216 -16.14456 -16.11250 -15.83161 -15.45758 -15.19548 -15.13174 -14.99443 -14.80937 -14.35566 -14.15521 -13.95423 -13.78394 -13.65642 -13.30752 -13.13969 -12.77568 -12.75336 -12.48547 -12.32448 -12.16137 -11.91497 -11.62538 -11.38823 -11.34327 -10.91247 -10.84050 -10.46093 -10.19280 -9.85013 -9.81747 -9.20795 -8.38456 -6.47348 -0.71602 -0.07138 0.06001 0.46085 0.51456 0.65872 1.06604 1.30922 1.38412 1.47215 1.59470 1.95401 2.26257 2.40315 2.97117 2.97802 3.22929 3.46450 3.98444 3.99257 4.13501 4.15925 4.35480 4.38310 4.39999 4.50271 4.58566 4.61361 4.63256 4.80873 4.91015 5.03956 5.13347 5.16458 5.31263 5.32668 5.42555 5.48890 5.56748 5.61946 5.79132 5.98081 6.06223 6.22434 6.46153 6.58231 6.82810 7.19745 8.76688 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.032234 B = 0.001940 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.431342 B =14432.308272 C =15086.118768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.240 3.760 3 H 0.043 0.957 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.028 3.972 7 N -0.932 5.932 8 Si 0.942 3.058 9 H -0.259 1.259 10 H -0.251 1.251 11 H -0.294 1.294 12 N -0.663 5.663 13 C 0.511 3.489 14 O -0.542 6.542 15 C 0.511 3.489 16 O -0.496 6.496 17 N -0.586 5.586 18 C 0.040 3.960 19 C -0.230 4.230 20 C 0.175 3.825 21 C -0.056 4.056 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.100 4.100 27 N -0.510 5.510 28 S 0.324 5.676 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.271 0.729 33 H 0.414 0.586 34 H 0.444 0.556 35 H 0.194 0.806 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 4.984 31.066 31.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.137 3.863 3 H 0.061 0.939 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.172 4.172 7 N -0.571 5.571 8 Si 0.769 3.231 9 H -0.184 1.184 10 H -0.175 1.175 11 H -0.221 1.221 12 N -0.312 5.312 13 C 0.290 3.710 14 O -0.421 6.421 15 C 0.292 3.708 16 O -0.368 6.368 17 N -0.234 5.234 18 C -0.186 4.186 19 C -0.267 4.267 20 C 0.002 3.998 21 C -0.061 4.061 22 C -0.115 4.115 23 C -0.142 4.142 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.120 4.120 27 N -0.335 5.335 28 S 0.476 5.524 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.251 0.749 34 H 0.287 0.713 35 H 0.211 0.789 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.375 2.819 30.241 30.465 hybrid contribution -0.600 1.879 -0.530 2.043 sum 1.775 4.698 29.711 30.133 Atomic orbital electron populations 1.22382 0.96804 1.02160 1.00365 1.19070 0.91894 0.93713 0.81672 0.93877 1.21187 1.32933 1.13912 0.89936 0.92859 1.25623 0.96831 0.99662 0.95090 1.69986 1.46318 1.41991 0.98779 0.85953 0.79549 0.79913 0.77718 1.18439 1.17486 1.22137 1.45975 1.61776 1.15102 1.08374 1.19522 0.80316 0.86833 0.84290 1.90748 1.50979 1.15501 1.84861 1.20540 0.78697 0.86849 0.84685 1.90771 1.46681 1.15608 1.83782 1.42181 1.60824 1.15502 1.04881 1.22740 1.03254 1.01636 0.90990 1.21059 1.11494 1.04962 0.89183 1.19871 0.95880 0.88464 0.95581 1.18302 1.03753 0.95284 0.88734 1.21514 0.98313 0.94102 0.97603 1.21471 0.98997 1.01217 0.92521 1.21686 0.96858 0.92918 1.01034 1.21394 1.00416 0.97556 0.95459 1.21365 0.97510 0.99413 0.93717 1.76755 1.27583 1.21801 1.07390 1.85168 1.58071 1.03368 1.05809 0.92422 0.93382 0.91680 0.91935 0.74917 0.71335 0.78895 0.83448 0.82829 0.83194 0.83953 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.29 8.96 71.99 0.64 -5.65 16 2 C 0.24 10.58 2.15 44.25 0.10 10.67 16 3 H 0.04 2.02 6.63 -2.39 -0.02 2.01 16 4 C -0.54 -28.54 9.31 25.60 0.24 -28.30 16 5 H 0.05 3.06 7.98 -2.91 -0.02 3.04 16 6 C 0.03 1.53 5.45 84.65 0.46 1.99 16 7 N -0.93 -54.74 13.96 21.45 0.30 -54.44 16 8 Si 0.94 41.97 24.37 68.60 1.67 43.65 16 9 H -0.26 -10.81 6.88 99.48 0.68 -10.13 16 10 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 N -0.66 -24.98 5.06 -447.57 -2.27 -27.25 16 13 C 0.51 17.15 7.85 87.22 0.68 17.83 16 14 O -0.54 -19.53 16.14 -3.30 -0.05 -19.59 16 15 C 0.51 14.62 7.85 87.23 0.68 15.30 16 16 O -0.50 -15.76 14.20 -3.37 -0.05 -15.81 16 17 N -0.59 -13.11 5.40 -309.86 -1.67 -14.78 16 18 C 0.04 0.92 7.25 82.94 0.60 1.52 16 19 C -0.23 -4.27 9.58 21.78 0.21 -4.06 16 20 C 0.18 3.84 6.64 42.08 0.28 4.12 16 21 C -0.06 -1.03 5.88 -20.04 -0.12 -1.15 16 22 C -0.10 -1.20 9.47 22.48 0.21 -0.99 16 23 C -0.12 -1.19 10.03 22.24 0.22 -0.96 16 24 C -0.11 -1.02 10.04 22.31 0.22 -0.80 16 25 C -0.13 -1.66 10.03 22.24 0.22 -1.44 16 26 C -0.10 -1.79 9.61 22.48 0.22 -1.57 16 27 N -0.51 -13.29 11.34 -52.25 -0.59 -13.88 16 28 S 0.32 8.55 21.03 -56.49 -1.19 7.36 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.94 3.28 -2.39 -0.01 1.93 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.14 16 33 H 0.41 15.02 8.01 -92.70 -0.74 14.28 16 34 H 0.44 7.78 8.29 -92.71 -0.77 7.01 16 35 H 0.19 2.11 6.59 -2.91 -0.02 2.09 16 36 H 0.15 1.17 6.45 -2.91 -0.02 1.15 16 37 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 38 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 39 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.12 2.34 7.64 -2.91 -0.02 2.32 16 Total: -1.00 -66.48 355.73 0.57 -65.91 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.46 Total: 22.31 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 4.88 Total: 6.52 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.23 Total: -110.36 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.10 Total: -35.40 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.67 Total: 43.65 kcal Atomic # 16 Polarization: 8.55 SS G_CDS: -1.19 Total: 7.36 kcal Total: -66.48 0.57 -65.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122925676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.395 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds