Wall clock time and date at job start Wed Apr 1 2020 02:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 C 1.50699 * 109.47546 * 119.99852 * 2 1 3 5 5 H 1.08001 * 119.99527 * 91.54140 * 4 2 1 6 6 C 1.37873 * 120.00195 * 271.54745 * 4 2 1 7 7 N 1.31515 * 120.00098 * 173.54836 * 6 4 2 8 8 Si 1.86805 * 119.99856 * 353.55109 * 6 4 2 9 9 H 1.48508 * 109.46618 * 274.28069 * 8 6 4 10 10 H 1.48496 * 109.47132 * 34.27872 * 8 6 4 11 11 H 1.48501 * 109.47171 * 154.28314 * 8 6 4 12 12 N 1.46498 * 109.47378 * 240.00162 * 2 1 3 13 13 C 1.34776 * 120.00257 * 84.99203 * 12 2 1 14 14 O 1.21370 * 119.99875 * 0.02562 * 13 12 2 15 15 C 1.49337 * 120.00104 * 180.02562 * 13 12 2 16 16 O 1.21378 * 119.99901 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99637 * 180.02562 * 15 13 12 18 18 C 1.39552 * 119.99766 * 184.58231 * 17 15 13 19 19 C 1.39087 * 119.92890 * 323.82652 * 18 17 15 20 20 C 1.37772 * 120.06397 * 179.77029 * 19 18 17 21 21 C 1.39643 * 119.93138 * 0.52889 * 20 19 18 22 22 C 1.47781 * 120.06305 * 179.74874 * 21 20 19 23 23 N 1.30267 * 125.47808 * 359.97438 * 22 21 20 24 24 C 1.31338 * 117.02433 * 180.02562 * 23 22 21 25 25 C 1.33689 * 115.85226 * 0.02562 * 24 23 22 26 26 S 1.76176 * 125.47364 * 179.67530 * 22 21 20 27 27 C 1.39634 * 119.86920 * 359.72607 * 21 20 19 28 28 C 1.37774 * 119.93120 * 359.97438 * 27 21 20 29 29 H 1.09003 * 109.46997 * 174.78665 * 1 2 3 30 30 H 1.09000 * 109.47216 * 294.78393 * 1 2 3 31 31 H 1.08998 * 109.47316 * 54.78525 * 1 2 3 32 32 H 0.97006 * 119.99526 * 180.02562 * 7 6 4 33 33 H 0.97000 * 120.00012 * 265.00525 * 12 2 1 34 34 H 0.97003 * 120.00457 * 4.57320 * 17 15 13 35 35 H 1.08002 * 119.96805 * 0.02562 * 19 18 17 36 36 H 1.08000 * 120.03160 * 180.27635 * 20 19 18 37 37 H 1.08001 * 122.07410 * 179.97438 * 24 23 22 38 38 H 1.08002 * 125.88342 * 180.02562 * 25 24 23 39 39 H 1.07997 * 120.03196 * 179.97438 * 27 21 20 40 40 H 1.08001 * 119.96347 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.2361 -1.7704 1.1965 6 6 2.2318 -0.0070 2.3994 7 7 2.5475 -0.6452 3.5051 8 14 2.0536 1.8525 2.4126 9 1 3.3380 2.4757 2.0036 10 1 0.9842 2.2540 1.4637 11 1 1.6970 2.3058 3.7810 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8586 1.1594 -2.4116 15 6 2.6443 -0.7224 -3.5766 16 8 2.9322 -1.9003 -3.5223 17 7 2.7733 -0.0499 -4.7374 18 6 3.1461 -0.7279 -5.8988 19 6 4.0588 -1.7750 -5.8284 20 6 4.4251 -2.4493 -6.9726 21 6 3.8875 -2.0733 -8.2053 22 6 4.2827 -2.7911 -9.4352 23 7 5.1213 -3.7862 -9.4935 24 6 5.3533 -4.3025 -10.6787 25 6 4.6956 -3.7408 -11.6981 26 16 3.6897 -2.4431 -11.0573 27 6 2.9755 -1.0182 -8.2735 28 6 2.6083 -0.3517 -7.1250 29 1 -0.3633 -1.0234 -0.0934 30 1 -0.3634 0.4308 0.9330 31 1 -0.3634 0.5926 -0.8396 32 1 2.6875 -0.1503 4.3276 33 1 2.2490 -1.6317 -1.1526 34 1 2.6070 0.9054 -4.7657 35 1 4.4776 -2.0625 -4.8753 36 1 5.1305 -3.2653 -6.9167 37 1 6.0338 -5.1290 -10.8210 38 1 4.7642 -4.0355 -12.7349 39 1 2.5584 -0.7249 -9.2255 40 1 1.9032 0.4648 -7.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123175720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:02 Heat of formation + Delta-G solvation = 8.276830 kcal Electronic energy + Delta-G solvation = -25662.777761 eV Core-core repulsion = 21762.688052 eV Total energy + Delta-G solvation = -3900.089709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01071 -39.95991 -39.13803 -38.02297 -35.62619 -34.84100 -32.46173 -31.75154 -31.36084 -30.04421 -29.17636 -26.05949 -25.40087 -24.46799 -23.38110 -22.41351 -20.77091 -20.03346 -19.77625 -18.95099 -18.54817 -17.63336 -16.86771 -16.53198 -15.94738 -15.85902 -15.32372 -15.26297 -14.91403 -14.85337 -14.39798 -14.09663 -13.87750 -13.72080 -13.46741 -13.34002 -12.99229 -12.65688 -12.60407 -12.46591 -11.86289 -11.68282 -11.64835 -11.36121 -11.21131 -10.93385 -10.81065 -10.63166 -10.07798 -9.95335 -9.87055 -9.44721 -9.37513 -9.34905 -9.20291 -8.77785 -8.41539 -8.14327 -6.29970 -4.34458 -0.14657 0.90029 1.04563 1.11714 1.31176 1.69604 2.45012 2.57358 3.20277 3.28725 3.33594 3.40435 3.59838 3.63869 3.89509 4.25141 4.55754 4.58850 4.68676 4.77713 4.82220 5.01012 5.06722 5.10272 5.18885 5.27653 5.61601 5.72223 5.90629 5.99349 6.13625 6.17546 6.18683 6.39013 6.52881 6.62862 6.73417 6.86319 7.04345 7.17272 7.33691 7.33720 7.63925 7.96193 8.35000 8.47938 8.72218 9.29409 10.81461 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.001832 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.566078 B =15276.806233 C =15746.039675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.230 3.770 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.884 5.884 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.258 1.258 11 H -0.284 1.284 12 N -0.661 5.661 13 C 0.495 3.505 14 O -0.538 6.538 15 C 0.509 3.491 16 O -0.497 6.497 17 N -0.652 5.652 18 C 0.169 3.831 19 C -0.123 4.123 20 C -0.047 4.047 21 C -0.055 4.055 22 C 0.131 3.869 23 N -0.470 5.470 24 C 0.044 3.956 25 C -0.256 4.256 26 S 0.081 5.919 27 C -0.075 4.075 28 C -0.141 4.141 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.269 0.731 33 H 0.408 0.592 34 H 0.425 0.575 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.129 0.871 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -1.810 -29.543 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.129 3.871 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.519 5.519 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.183 1.183 11 H -0.210 1.210 12 N -0.310 5.310 13 C 0.274 3.726 14 O -0.418 6.418 15 C 0.292 3.708 16 O -0.370 6.370 17 N -0.299 5.299 18 C 0.073 3.927 19 C -0.143 4.143 20 C -0.069 4.069 21 C -0.060 4.060 22 C -0.144 4.144 23 N -0.184 5.184 24 C -0.108 4.108 25 C -0.395 4.395 26 S 0.336 5.664 27 C -0.096 4.096 28 C -0.161 4.161 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.263 0.737 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.193 0.807 38 H 0.196 0.804 39 H 0.147 0.853 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.875 -1.309 -29.242 29.332 hybrid contribution 0.565 0.166 -0.195 0.621 sum 2.440 -1.143 -29.438 29.561 Atomic orbital electron populations 1.22276 0.97944 1.00518 1.00177 1.19333 0.91349 0.94407 0.82032 0.92846 1.20955 1.46433 0.97360 0.92623 0.89980 1.24894 0.93588 0.98599 0.95149 1.69881 1.45805 1.36294 0.99946 0.86937 0.79787 0.85718 0.77746 1.19763 1.18265 1.20986 1.46541 1.61017 1.14866 1.08593 1.19723 0.81057 0.87286 0.84538 1.90729 1.51051 1.15222 1.84752 1.20927 0.78041 0.87103 0.84743 1.90759 1.46268 1.15527 1.84410 1.43243 1.66856 1.13282 1.06558 1.17965 0.94244 0.94676 0.85784 1.21348 0.96613 0.96365 0.99959 1.21165 0.97560 0.98255 0.89902 1.17787 1.01069 0.97438 0.89678 1.25918 0.96796 0.96110 0.95555 1.66578 1.15851 1.09546 1.26405 1.21697 1.01510 1.01709 0.85886 1.27009 1.04872 1.02590 1.04999 1.84949 1.43832 1.33853 1.03717 1.20871 0.96133 0.94237 0.98340 1.20803 1.01723 1.02795 0.90821 0.93210 0.92147 0.95047 0.92082 0.75666 0.73663 0.83383 0.84192 0.80735 0.80422 0.85322 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.23 37.15 0.34 -2.80 16 2 C 0.23 5.26 2.12 -69.09 -0.15 5.12 16 3 H 0.05 1.30 5.05 -51.93 -0.26 1.04 16 4 C -0.54 -14.03 9.05 -34.44 -0.31 -14.34 16 5 H 0.08 2.29 8.04 -52.49 -0.42 1.87 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.88 -25.44 13.96 55.43 0.77 -24.67 16 8 Si 0.87 20.57 26.47 -169.99 -4.50 16.07 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.26 -5.90 6.48 56.52 0.37 -5.53 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.66 -13.14 5.06 -55.40 -0.28 -13.42 16 13 C 0.50 9.04 7.85 -11.64 -0.09 8.95 16 14 O -0.54 -10.71 16.14 5.48 0.09 -10.62 16 15 C 0.51 7.87 7.72 -11.64 -0.09 7.78 16 16 O -0.50 -8.37 13.96 5.47 0.08 -8.29 16 17 N -0.65 -7.98 5.31 -10.27 -0.05 -8.04 16 18 C 0.17 1.94 6.28 -83.72 -0.53 1.41 16 19 C -0.12 -1.49 8.67 -39.44 -0.34 -1.83 16 20 C -0.05 -0.52 9.67 -39.23 -0.38 -0.90 16 21 C -0.06 -0.57 5.87 -104.95 -0.62 -1.18 16 22 C 0.13 1.33 7.34 -14.31 -0.11 1.22 16 23 N -0.47 -5.07 10.14 -11.38 -0.12 -5.18 16 24 C 0.04 0.35 11.25 -19.36 -0.22 0.14 16 25 C -0.26 -1.72 11.35 29.14 0.33 -1.39 16 26 S 0.08 0.61 22.39 -107.50 -2.41 -1.79 16 27 C -0.07 -0.65 9.60 -39.23 -0.38 -1.03 16 28 C -0.14 -1.27 9.95 -39.44 -0.39 -1.67 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.28 7.41 -51.93 -0.38 0.89 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.41 7.68 8.05 -40.82 -0.33 7.36 16 34 H 0.42 4.45 8.30 -40.82 -0.34 4.11 16 35 H 0.15 1.97 6.29 -52.49 -0.33 1.64 16 36 H 0.14 1.50 7.81 -52.49 -0.41 1.09 16 37 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.18 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.84 7.29 -52.49 -0.38 0.45 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -31.09 362.52 -8.11 -39.20 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.14 Total: 9.64 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.02 Total: 1.63 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.32 Total: -51.30 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.16 Total: -18.91 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.50 Total: 16.07 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.41 Total: -1.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.09 -8.11 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123175720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.478 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds