Wall clock time and date at job start Wed Apr 1 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 C 1.50699 * 109.47546 * 119.99852 * 2 1 3 5 5 H 1.08001 * 119.99527 * 91.54140 * 4 2 1 6 6 C 1.37873 * 120.00195 * 271.54745 * 4 2 1 7 7 N 1.31515 * 120.00098 * 173.54836 * 6 4 2 8 8 Si 1.86805 * 119.99856 * 353.55109 * 6 4 2 9 9 H 1.48508 * 109.46618 * 274.28069 * 8 6 4 10 10 H 1.48496 * 109.47132 * 34.27872 * 8 6 4 11 11 H 1.48501 * 109.47171 * 154.28314 * 8 6 4 12 12 N 1.46498 * 109.47378 * 240.00162 * 2 1 3 13 13 C 1.34776 * 120.00257 * 84.99203 * 12 2 1 14 14 O 1.21370 * 119.99875 * 0.02562 * 13 12 2 15 15 C 1.49337 * 120.00104 * 180.02562 * 13 12 2 16 16 O 1.21378 * 119.99901 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99637 * 180.02562 * 15 13 12 18 18 C 1.39552 * 119.99766 * 184.58231 * 17 15 13 19 19 C 1.39087 * 119.92890 * 323.82652 * 18 17 15 20 20 C 1.37772 * 120.06397 * 179.77029 * 19 18 17 21 21 C 1.39643 * 119.93138 * 0.52889 * 20 19 18 22 22 C 1.47781 * 120.06305 * 179.74874 * 21 20 19 23 23 N 1.30267 * 125.47808 * 359.97438 * 22 21 20 24 24 C 1.31338 * 117.02433 * 180.02562 * 23 22 21 25 25 C 1.33689 * 115.85226 * 0.02562 * 24 23 22 26 26 S 1.76176 * 125.47364 * 179.67530 * 22 21 20 27 27 C 1.39634 * 119.86920 * 359.72607 * 21 20 19 28 28 C 1.37774 * 119.93120 * 359.97438 * 27 21 20 29 29 H 1.09003 * 109.46997 * 174.78665 * 1 2 3 30 30 H 1.09000 * 109.47216 * 294.78393 * 1 2 3 31 31 H 1.08998 * 109.47316 * 54.78525 * 1 2 3 32 32 H 0.97006 * 119.99526 * 180.02562 * 7 6 4 33 33 H 0.97000 * 120.00012 * 265.00525 * 12 2 1 34 34 H 0.97003 * 120.00457 * 4.57320 * 17 15 13 35 35 H 1.08002 * 119.96805 * 0.02562 * 19 18 17 36 36 H 1.08000 * 120.03160 * 180.27635 * 20 19 18 37 37 H 1.08001 * 122.07410 * 179.97438 * 24 23 22 38 38 H 1.08002 * 125.88342 * 180.02562 * 25 24 23 39 39 H 1.07997 * 120.03196 * 179.97438 * 27 21 20 40 40 H 1.08001 * 119.96347 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.2361 -1.7704 1.1965 6 6 2.2318 -0.0070 2.3994 7 7 2.5475 -0.6452 3.5051 8 14 2.0536 1.8525 2.4126 9 1 3.3380 2.4757 2.0036 10 1 0.9842 2.2540 1.4637 11 1 1.6970 2.3058 3.7810 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8586 1.1594 -2.4116 15 6 2.6443 -0.7224 -3.5766 16 8 2.9322 -1.9003 -3.5223 17 7 2.7733 -0.0499 -4.7374 18 6 3.1461 -0.7279 -5.8988 19 6 4.0588 -1.7750 -5.8284 20 6 4.4251 -2.4493 -6.9726 21 6 3.8875 -2.0733 -8.2053 22 6 4.2827 -2.7911 -9.4352 23 7 5.1213 -3.7862 -9.4935 24 6 5.3533 -4.3025 -10.6787 25 6 4.6956 -3.7408 -11.6981 26 16 3.6897 -2.4431 -11.0573 27 6 2.9755 -1.0182 -8.2735 28 6 2.6083 -0.3517 -7.1250 29 1 -0.3633 -1.0234 -0.0934 30 1 -0.3634 0.4308 0.9330 31 1 -0.3634 0.5926 -0.8396 32 1 2.6875 -0.1503 4.3276 33 1 2.2490 -1.6317 -1.1526 34 1 2.6070 0.9054 -4.7657 35 1 4.4776 -2.0625 -4.8753 36 1 5.1305 -3.2653 -6.9167 37 1 6.0338 -5.1290 -10.8210 38 1 4.7642 -4.0355 -12.7349 39 1 2.5584 -0.7249 -9.2255 40 1 1.9032 0.4648 -7.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123175720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:01 Heat of formation + Delta-G solvation = -13.367112 kcal Electronic energy + Delta-G solvation = -25663.716313 eV Core-core repulsion = 21762.688052 eV Total energy + Delta-G solvation = -3901.028261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16867 -40.79086 -40.20347 -39.17838 -37.11109 -36.11321 -34.41020 -32.52586 -32.16206 -31.75957 -29.93276 -27.36150 -26.99968 -25.51101 -24.20773 -23.42813 -22.18914 -21.36057 -20.70816 -20.16880 -19.28901 -18.80761 -18.50902 -17.48853 -17.24199 -17.07249 -16.91641 -16.03014 -15.91134 -15.83401 -15.53880 -15.16161 -15.02880 -14.85914 -14.56636 -14.53483 -14.30066 -14.13249 -13.84867 -13.45347 -13.34329 -13.08017 -12.88150 -12.68460 -12.47650 -12.40833 -12.33111 -11.84417 -11.70283 -11.30576 -10.85566 -10.76503 -10.66946 -10.53575 -10.14490 -10.07563 -10.05966 -8.93377 -8.38689 -6.46924 -0.85321 0.09467 0.28765 0.32468 0.59851 0.72227 1.23736 1.35166 1.37598 1.47329 1.87128 2.10299 2.28324 2.60928 2.74755 2.99644 3.01682 3.41619 3.82069 3.88239 4.01201 4.23150 4.35402 4.38666 4.39109 4.42028 4.53244 4.70284 4.75880 4.94005 4.97890 5.01013 5.13651 5.13793 5.24002 5.31808 5.37088 5.42170 5.51319 5.75297 5.86826 6.08508 6.48620 6.57292 6.70474 6.72771 6.95435 7.21236 8.76236 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.001832 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.566078 B =15276.806233 C =15746.039675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.044 0.956 4 C -0.536 4.536 5 H 0.052 0.948 6 C 0.031 3.969 7 N -0.929 5.929 8 Si 0.929 3.071 9 H -0.271 1.271 10 H -0.243 1.243 11 H -0.278 1.278 12 N -0.669 5.669 13 C 0.500 3.500 14 O -0.551 6.551 15 C 0.517 3.483 16 O -0.516 6.516 17 N -0.633 5.633 18 C 0.146 3.854 19 C -0.134 4.134 20 C -0.060 4.060 21 C -0.053 4.053 22 C 0.094 3.906 23 N -0.497 5.497 24 C 0.019 3.981 25 C -0.240 4.240 26 S 0.118 5.882 27 C -0.070 4.070 28 C -0.124 4.124 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.272 0.728 33 H 0.411 0.589 34 H 0.435 0.565 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.195 0.805 38 H 0.211 0.789 39 H 0.157 0.843 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -0.379 -33.253 33.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.132 3.868 3 H 0.062 0.938 4 C -0.574 4.574 5 H 0.070 0.930 6 C -0.170 4.170 7 N -0.567 5.567 8 Si 0.753 3.247 9 H -0.197 1.197 10 H -0.167 1.167 11 H -0.204 1.204 12 N -0.319 5.319 13 C 0.280 3.720 14 O -0.431 6.431 15 C 0.299 3.701 16 O -0.390 6.390 17 N -0.280 5.280 18 C 0.051 3.949 19 C -0.154 4.154 20 C -0.082 4.082 21 C -0.058 4.058 22 C -0.179 4.179 23 N -0.212 5.212 24 C -0.132 4.132 25 C -0.379 4.379 26 S 0.374 5.626 27 C -0.091 4.091 28 C -0.144 4.144 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.275 0.725 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.211 0.789 38 H 0.228 0.772 39 H 0.174 0.826 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.896 0.139 -33.005 33.017 hybrid contribution 0.929 -0.399 0.691 1.224 sum 1.824 -0.261 -32.314 32.366 Atomic orbital electron populations 1.22176 0.96242 1.01337 1.00619 1.19110 0.92541 0.93431 0.81760 0.93822 1.21139 1.45761 0.96280 0.94198 0.92991 1.25659 0.93529 1.02991 0.94779 1.69999 1.47849 1.38122 1.00729 0.86019 0.80086 0.80375 0.78244 1.19689 1.16687 1.20375 1.46302 1.61863 1.15040 1.08657 1.20042 0.80140 0.87008 0.84841 1.90711 1.51386 1.15814 1.85157 1.20266 0.78423 0.86664 0.84765 1.90771 1.47485 1.16175 1.84614 1.43018 1.65621 1.13592 1.05808 1.18085 0.95415 0.95254 0.86142 1.21228 0.97493 0.97232 0.99470 1.21103 0.98241 0.98534 0.90359 1.17998 1.00688 0.97544 0.89539 1.25942 0.98185 0.96986 0.96828 1.66565 1.16340 1.10085 1.28189 1.22066 1.02727 1.02792 0.85568 1.27492 1.03009 1.01198 1.06214 1.84747 1.42986 1.33490 1.01415 1.21164 0.95280 0.93267 0.99409 1.21096 1.00996 1.02796 0.89516 0.92489 0.92493 0.93520 0.91918 0.75301 0.72505 0.85385 0.84876 0.78872 0.77234 0.82559 0.81470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 9.23 71.98 0.66 -5.23 16 2 C 0.23 10.64 2.12 44.24 0.09 10.74 16 3 H 0.04 2.08 5.05 -2.38 -0.01 2.07 16 4 C -0.54 -28.64 9.05 25.60 0.23 -28.40 16 5 H 0.05 3.02 8.04 -2.91 -0.02 3.00 16 6 C 0.03 1.71 5.47 84.65 0.46 2.18 16 7 N -0.93 -54.84 13.96 21.45 0.30 -54.54 16 8 Si 0.93 42.33 26.47 68.60 1.82 44.14 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.24 -10.42 6.48 99.48 0.64 -9.77 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 N -0.67 -26.66 5.06 -447.55 -2.27 -28.92 16 13 C 0.50 17.95 7.85 87.23 0.68 18.63 16 14 O -0.55 -21.16 16.14 -3.31 -0.05 -21.21 16 15 C 0.52 15.81 7.72 87.23 0.67 16.48 16 16 O -0.52 -17.67 13.96 -3.33 -0.05 -17.71 16 17 N -0.63 -14.75 5.31 -304.76 -1.62 -16.36 16 18 C 0.15 3.18 6.28 38.32 0.24 3.42 16 19 C -0.13 -3.32 8.67 22.36 0.19 -3.13 16 20 C -0.06 -1.38 9.67 22.50 0.22 -1.16 16 21 C -0.05 -1.05 5.87 -20.08 -0.12 -1.17 16 22 C 0.09 1.79 7.34 87.45 0.64 2.44 16 23 N -0.50 -10.39 10.14 -189.90 -1.92 -12.31 16 24 C 0.02 0.28 11.25 83.73 0.94 1.22 16 25 C -0.24 -2.51 11.35 66.79 0.76 -1.75 16 26 S 0.12 1.46 22.39 -56.49 -1.26 0.19 16 27 C -0.07 -1.05 9.60 22.50 0.22 -0.83 16 28 C -0.12 -1.91 9.95 22.36 0.22 -1.69 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.33 7.41 -2.39 -0.02 2.31 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 33 H 0.41 15.87 8.05 -92.71 -0.75 15.12 16 34 H 0.43 8.27 8.30 -92.71 -0.77 7.50 16 35 H 0.13 3.64 6.29 -2.91 -0.02 3.62 16 36 H 0.13 3.09 7.81 -2.91 -0.02 3.07 16 37 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.21 0.71 8.06 -2.91 -0.02 0.68 16 39 H 0.16 1.43 7.29 -2.91 -0.02 1.41 16 40 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -68.35 362.52 0.62 -67.73 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.45 Total: 27.26 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.13 Total: 11.75 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -5.51 Total: -112.15 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.10 Total: -38.93 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.82 Total: 44.14 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.26 Total: 0.19 kcal Total: -68.35 0.62 -67.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123175720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.364 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds