Wall clock time and date at job start Wed Apr 1 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47240 * 2 1 4 4 C 1.50700 * 109.47684 * 239.99901 * 2 1 3 5 5 H 1.07996 * 120.00216 * 240.00392 * 4 2 1 6 6 C 1.37879 * 119.99507 * 59.99742 * 4 2 1 7 7 N 1.31513 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99735 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47078 * 89.99984 * 8 6 4 10 10 H 1.48503 * 109.47227 * 209.99592 * 8 6 4 11 11 H 1.48500 * 109.47489 * 330.00135 * 8 6 4 12 12 N 1.46504 * 109.47434 * 119.99608 * 2 1 3 13 13 C 1.34773 * 120.00349 * 275.00435 * 12 2 1 14 14 O 1.21364 * 119.99833 * 0.02562 * 13 12 2 15 15 C 1.49332 * 120.00123 * 179.97438 * 13 12 2 16 16 O 1.21378 * 120.00053 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00123 * 179.97438 * 15 13 12 18 18 C 1.39546 * 120.00350 * 185.27872 * 17 15 13 19 19 C 1.39084 * 119.93049 * 33.51254 * 18 17 15 20 20 C 1.37776 * 120.06773 * 180.02562 * 19 18 17 21 21 C 1.39642 * 119.92742 * 359.97438 * 20 19 18 22 22 C 1.47785 * 120.06177 * 179.97438 * 21 20 19 23 23 N 1.30268 * 125.47515 * 359.97438 * 22 21 20 24 24 C 1.31338 * 117.01940 * 179.75517 * 23 22 21 25 25 C 1.33693 * 115.85849 * 0.48760 * 24 23 22 26 26 S 1.76174 * 125.47536 * 180.02562 * 22 21 20 27 27 C 1.39639 * 119.87351 * 0.25324 * 21 20 19 28 28 C 1.37771 * 119.92804 * 359.49105 * 27 21 20 29 29 H 1.08997 * 109.47079 * 60.00602 * 1 2 3 30 30 H 1.09005 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47610 * 299.99709 * 1 2 3 32 32 H 0.96998 * 120.00400 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99598 * 94.99808 * 12 2 1 34 34 H 0.97007 * 119.99709 * 5.28417 * 17 15 13 35 35 H 1.07996 * 119.96811 * 0.02562 * 19 18 17 36 36 H 1.07994 * 120.03282 * 179.97438 * 20 19 18 37 37 H 1.08003 * 122.07200 * 180.30902 * 24 23 22 38 38 H 1.07993 * 125.88775 * 179.81632 * 25 24 23 39 39 H 1.07993 * 120.03529 * 179.72454 * 27 21 20 40 40 H 1.08001 * 119.96544 * 180.25609 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8579 1.1592 2.4118 15 6 2.6444 -0.7223 3.5766 16 8 2.9322 -1.9002 3.5223 17 7 2.7735 -0.0498 4.7374 18 6 3.3410 -0.6766 5.8475 19 6 4.3503 -1.6175 5.6727 20 6 4.9122 -2.2385 6.7667 21 6 4.4677 -1.9219 8.0521 22 6 5.0679 -2.5866 9.2276 23 7 6.0142 -3.4810 9.1891 24 6 6.4289 -3.9608 10.3393 25 6 5.8187 -3.4781 11.4265 26 16 4.6178 -2.2977 10.9062 27 6 3.4509 -0.9804 8.2242 28 6 2.8966 -0.3589 7.1266 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7087 1.1612 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 2.4720 0.8700 4.8012 35 1 4.6939 -1.8615 4.6784 36 1 5.6956 -2.9692 6.6303 37 1 7.2123 -4.7015 10.4027 38 1 6.0284 -3.7598 12.4477 39 1 3.1020 -0.7369 9.2168 40 1 2.1130 0.3724 7.2593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123175923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:05 Heat of formation + Delta-G solvation = 6.879102 kcal Electronic energy + Delta-G solvation = -25590.164801 eV Core-core repulsion = 21690.014482 eV Total energy + Delta-G solvation = -3900.150319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.96006 -39.92888 -39.06048 -37.93241 -35.53878 -34.77017 -32.47646 -31.72073 -31.34212 -29.36538 -29.02167 -25.99012 -25.35773 -24.40986 -23.37416 -22.38737 -20.82606 -20.01918 -19.65414 -18.87058 -18.50315 -17.62305 -16.55154 -16.41332 -15.82498 -15.78403 -15.25440 -15.15915 -14.86484 -14.81160 -14.38739 -14.12999 -13.84574 -13.69324 -13.47010 -13.24191 -12.95842 -12.57025 -12.51915 -11.86206 -11.84509 -11.63151 -11.31201 -11.16958 -11.02718 -10.85351 -10.82273 -10.41034 -10.30320 -10.05990 -9.85577 -9.42403 -9.32169 -9.18468 -9.12015 -8.66670 -8.19887 -8.08759 -6.20521 -4.30294 -0.12639 0.91623 1.06995 1.13340 1.32782 1.78197 2.51536 2.60018 3.22123 3.29140 3.32106 3.46511 3.65604 3.67769 3.97515 4.30293 4.57276 4.60676 4.70615 4.79139 4.98762 5.03021 5.08134 5.12686 5.20973 5.29449 5.63391 5.73501 5.92837 6.00505 6.15502 6.20006 6.64192 6.67741 6.79672 6.95856 6.98752 7.15392 7.33738 7.35274 7.57967 7.71069 7.81388 8.01149 8.36868 8.55129 8.80107 9.36903 10.85469 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.029093 B = 0.001785 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.209002 B =15684.920275 C =16452.127767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.666 5.666 13 C 0.495 3.505 14 O -0.534 6.534 15 C 0.508 3.492 16 O -0.499 6.499 17 N -0.653 5.653 18 C 0.175 3.825 19 C -0.125 4.125 20 C -0.044 4.044 21 C -0.058 4.058 22 C 0.132 3.868 23 N -0.471 5.471 24 C 0.044 3.956 25 C -0.256 4.256 26 S 0.081 5.919 27 C -0.072 4.072 28 C -0.144 4.144 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.425 0.575 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.175 0.825 38 H 0.178 0.822 39 H 0.129 0.871 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -4.766 26.789 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.315 5.315 13 C 0.273 3.727 14 O -0.413 6.413 15 C 0.291 3.709 16 O -0.372 6.372 17 N -0.299 5.299 18 C 0.078 3.922 19 C -0.145 4.145 20 C -0.067 4.067 21 C -0.063 4.063 22 C -0.143 4.143 23 N -0.185 5.185 24 C -0.108 4.108 25 C -0.395 4.395 26 S 0.336 5.664 27 C -0.093 4.093 28 C -0.164 4.164 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.264 0.736 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.192 0.808 38 H 0.196 0.804 39 H 0.147 0.853 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.109 -4.183 26.598 27.609 hybrid contribution 0.908 -1.148 -0.526 1.556 sum 7.017 -5.332 26.072 27.521 Atomic orbital electron populations 1.22102 0.97754 0.99607 1.01252 1.19007 0.91495 0.94175 0.79295 0.92711 1.21182 1.32870 1.13507 0.89983 0.91710 1.24878 0.94680 0.94915 0.99117 1.69885 1.35649 1.22337 1.24125 0.86385 0.79275 0.79246 0.81867 1.20447 1.21012 1.19735 1.46522 1.61083 1.14547 1.09327 1.19610 0.81321 0.87295 0.84487 1.90739 1.50693 1.15191 1.84675 1.21039 0.78082 0.86966 0.84767 1.90758 1.46735 1.15104 1.84589 1.43297 1.59913 1.17561 1.09155 1.17965 0.92616 0.95084 0.86502 1.21211 0.95231 0.97651 1.00443 1.21128 0.98134 0.97509 0.89883 1.17768 0.99122 0.99387 0.89990 1.25918 0.96291 0.97121 0.94930 1.66580 1.12091 1.10627 1.29167 1.21694 1.01714 1.01712 0.85677 1.27002 1.03243 1.04675 1.04613 1.84948 1.37678 1.40042 1.03704 1.20870 0.94832 0.94894 0.98748 1.20778 1.01869 1.03352 0.90411 0.88667 0.95066 0.96455 0.92417 0.76269 0.73617 0.83789 0.84221 0.80763 0.80441 0.85322 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.26 37.15 0.34 -3.20 16 2 C 0.26 6.40 2.56 -69.08 -0.18 6.23 16 3 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.06 11.32 55.43 0.63 -23.43 16 8 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.67 -13.79 5.06 -55.40 -0.28 -14.07 16 13 C 0.49 9.47 7.85 -11.64 -0.09 9.37 16 14 O -0.53 -11.29 16.15 5.49 0.09 -11.20 16 15 C 0.51 8.14 7.61 -11.64 -0.09 8.05 16 16 O -0.50 -8.61 14.16 5.47 0.08 -8.53 16 17 N -0.65 -8.31 5.31 -10.27 -0.05 -8.36 16 18 C 0.17 2.06 6.27 -83.72 -0.53 1.53 16 19 C -0.13 -1.55 8.63 -39.44 -0.34 -1.89 16 20 C -0.04 -0.50 9.67 -39.23 -0.38 -0.88 16 21 C -0.06 -0.61 5.87 -104.95 -0.62 -1.23 16 22 C 0.13 1.36 7.34 -14.31 -0.11 1.25 16 23 N -0.47 -5.13 10.14 -11.37 -0.12 -5.25 16 24 C 0.04 0.36 11.25 -19.36 -0.22 0.14 16 25 C -0.26 -1.76 11.35 29.14 0.33 -1.42 16 26 S 0.08 0.62 22.39 -107.50 -2.41 -1.78 16 27 C -0.07 -0.65 9.60 -39.23 -0.38 -1.02 16 28 C -0.14 -1.34 9.94 -39.44 -0.39 -1.73 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.40 7.76 8.01 -40.82 -0.33 7.43 16 34 H 0.43 4.69 8.29 -40.82 -0.34 4.36 16 35 H 0.14 1.94 6.41 -52.49 -0.34 1.61 16 36 H 0.14 1.52 7.81 -52.49 -0.41 1.11 16 37 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.18 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.86 7.29 -52.49 -0.38 0.48 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -30.22 364.59 -8.78 -39.00 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.16 Total: 10.16 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -3.03 Total: 2.69 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.18 Total: -51.11 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.41 Total: -1.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.22 -8.78 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123175923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.881 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds