Wall clock time and date at job start Wed Apr 1 2020 02:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47240 * 2 1 4 4 C 1.50700 * 109.47684 * 239.99901 * 2 1 3 5 5 H 1.07996 * 120.00216 * 240.00392 * 4 2 1 6 6 C 1.37879 * 119.99507 * 59.99742 * 4 2 1 7 7 N 1.31513 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99735 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47078 * 89.99984 * 8 6 4 10 10 H 1.48503 * 109.47227 * 209.99592 * 8 6 4 11 11 H 1.48500 * 109.47489 * 330.00135 * 8 6 4 12 12 N 1.46504 * 109.47434 * 119.99608 * 2 1 3 13 13 C 1.34773 * 120.00349 * 275.00435 * 12 2 1 14 14 O 1.21364 * 119.99833 * 0.02562 * 13 12 2 15 15 C 1.49332 * 120.00123 * 179.97438 * 13 12 2 16 16 O 1.21378 * 120.00053 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00123 * 179.97438 * 15 13 12 18 18 C 1.39546 * 120.00350 * 185.27872 * 17 15 13 19 19 C 1.39084 * 119.93049 * 33.51254 * 18 17 15 20 20 C 1.37776 * 120.06773 * 180.02562 * 19 18 17 21 21 C 1.39642 * 119.92742 * 359.97438 * 20 19 18 22 22 C 1.47785 * 120.06177 * 179.97438 * 21 20 19 23 23 N 1.30268 * 125.47515 * 359.97438 * 22 21 20 24 24 C 1.31338 * 117.01940 * 179.75517 * 23 22 21 25 25 C 1.33693 * 115.85849 * 0.48760 * 24 23 22 26 26 S 1.76174 * 125.47536 * 180.02562 * 22 21 20 27 27 C 1.39639 * 119.87351 * 0.25324 * 21 20 19 28 28 C 1.37771 * 119.92804 * 359.49105 * 27 21 20 29 29 H 1.08997 * 109.47079 * 60.00602 * 1 2 3 30 30 H 1.09005 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47610 * 299.99709 * 1 2 3 32 32 H 0.96998 * 120.00400 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99598 * 94.99808 * 12 2 1 34 34 H 0.97007 * 119.99709 * 5.28417 * 17 15 13 35 35 H 1.07996 * 119.96811 * 0.02562 * 19 18 17 36 36 H 1.07994 * 120.03282 * 179.97438 * 20 19 18 37 37 H 1.08003 * 122.07200 * 180.30902 * 24 23 22 38 38 H 1.07993 * 125.88775 * 179.81632 * 25 24 23 39 39 H 1.07993 * 120.03529 * 179.72454 * 27 21 20 40 40 H 1.08001 * 119.96544 * 180.25609 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8579 1.1592 2.4118 15 6 2.6444 -0.7223 3.5766 16 8 2.9322 -1.9002 3.5223 17 7 2.7735 -0.0498 4.7374 18 6 3.3410 -0.6766 5.8475 19 6 4.3503 -1.6175 5.6727 20 6 4.9122 -2.2385 6.7667 21 6 4.4677 -1.9219 8.0521 22 6 5.0679 -2.5866 9.2276 23 7 6.0142 -3.4810 9.1891 24 6 6.4289 -3.9608 10.3393 25 6 5.8187 -3.4781 11.4265 26 16 4.6178 -2.2977 10.9062 27 6 3.4509 -0.9804 8.2242 28 6 2.8966 -0.3589 7.1266 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7087 1.1612 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 2.4720 0.8700 4.8012 35 1 4.6939 -1.8615 4.6784 36 1 5.6956 -2.9692 6.6303 37 1 7.2123 -4.7015 10.4027 38 1 6.0284 -3.7598 12.4477 39 1 3.1020 -0.7369 9.2168 40 1 2.1130 0.3724 7.2593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123175923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:04 Heat of formation + Delta-G solvation = -13.063442 kcal Electronic energy + Delta-G solvation = -25591.029575 eV Core-core repulsion = 21690.014482 eV Total energy + Delta-G solvation = -3901.015093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15999 -40.77276 -40.17376 -39.16297 -37.08017 -36.12854 -34.34926 -32.51799 -32.16033 -31.10251 -29.91033 -27.38916 -26.96671 -25.50340 -24.22959 -23.47899 -22.30688 -21.28124 -20.68078 -20.11198 -19.27411 -18.75134 -18.12892 -17.46947 -17.19272 -17.05525 -16.89671 -16.03051 -15.90752 -15.82845 -15.53006 -15.20836 -15.01457 -14.80176 -14.54637 -14.44056 -14.12154 -13.90690 -13.73747 -13.42196 -13.07855 -12.90273 -12.81078 -12.65987 -12.46778 -12.34866 -12.30419 -12.14278 -11.75583 -11.15681 -10.77129 -10.69707 -10.61430 -10.52358 -10.12898 -10.06699 -9.98877 -8.91206 -8.20356 -6.37371 -0.85148 0.09073 0.29187 0.32147 0.63566 0.72788 1.26397 1.45685 1.46873 1.57175 1.87585 2.12860 2.38703 2.69274 2.75692 3.01597 3.10555 3.44501 3.80836 3.87659 4.01328 4.22817 4.35585 4.38448 4.40815 4.53627 4.70164 4.88930 4.94126 4.96557 5.01616 5.12421 5.13798 5.30119 5.30865 5.36810 5.43173 5.59215 5.73288 5.79555 5.96557 6.03735 6.50003 6.64335 6.72972 6.74943 7.05281 7.34696 8.85656 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.029093 B = 0.001785 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.209002 B =15684.920275 C =16452.127767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.267 3.733 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.555 6.555 15 C 0.519 3.481 16 O -0.514 6.514 17 N -0.634 5.634 18 C 0.149 3.851 19 C -0.136 4.136 20 C -0.057 4.057 21 C -0.055 4.055 22 C 0.095 3.905 23 N -0.497 5.497 24 C 0.019 3.981 25 C -0.241 4.241 26 S 0.118 5.882 27 C -0.068 4.068 28 C -0.127 4.127 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.022 0.978 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.434 0.566 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.195 0.805 38 H 0.211 0.789 39 H 0.157 0.843 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 -5.485 29.526 30.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.165 3.835 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.549 5.549 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.435 6.435 15 C 0.301 3.699 16 O -0.389 6.389 17 N -0.281 5.281 18 C 0.054 3.946 19 C -0.156 4.156 20 C -0.079 4.079 21 C -0.060 4.060 22 C -0.179 4.179 23 N -0.212 5.212 24 C -0.131 4.131 25 C -0.379 4.379 26 S 0.373 5.627 27 C -0.089 4.089 28 C -0.147 4.147 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.274 0.726 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.212 0.788 38 H 0.228 0.772 39 H 0.175 0.825 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.310 -4.898 29.384 30.450 hybrid contribution 0.920 -0.931 -1.110 1.716 sum 7.230 -5.830 28.274 29.760 Atomic orbital electron populations 1.21926 0.97345 0.99815 1.00406 1.18643 0.91777 0.92457 0.80651 0.96521 1.21481 1.33049 1.13752 0.90743 0.91209 1.25709 0.94780 0.95548 1.02026 1.70009 1.36542 1.23549 1.24825 0.85357 0.78871 0.78109 0.78087 1.19729 1.20893 1.19219 1.46272 1.61742 1.14822 1.09084 1.20076 0.80275 0.87009 0.85040 1.90719 1.51322 1.16233 1.85228 1.20237 0.78460 0.86544 0.84657 1.90764 1.47846 1.15515 1.84763 1.43069 1.58948 1.17724 1.08366 1.18098 0.93498 0.96072 0.86908 1.21111 0.96113 0.98465 0.99941 1.21079 0.98558 0.97932 0.90356 1.17984 0.98980 0.99156 0.89841 1.25929 0.97407 0.98239 0.96296 1.66567 1.12554 1.11041 1.31000 1.22068 1.02870 1.02761 0.85432 1.27488 1.01625 1.03024 1.05793 1.84757 1.37157 1.39561 1.01242 1.21162 0.93926 0.93907 0.99904 1.21073 1.01624 1.02934 0.89067 0.90792 0.94190 0.95914 0.92310 0.75404 0.72595 0.85668 0.84742 0.78845 0.77239 0.82536 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 9.26 71.98 0.67 -5.95 16 2 C 0.27 13.45 2.56 44.24 0.11 13.57 16 3 H 0.02 0.97 7.58 -2.39 -0.02 0.95 16 4 C -0.55 -28.94 8.73 25.60 0.22 -28.72 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -50.54 11.32 21.45 0.24 -50.30 16 8 Si 0.97 41.67 29.54 68.60 2.03 43.69 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 N -0.67 -28.31 5.06 -447.56 -2.27 -30.58 16 13 C 0.50 19.31 7.85 87.23 0.68 19.99 16 14 O -0.56 -23.89 16.15 -3.29 -0.05 -23.94 16 15 C 0.52 16.71 7.61 87.23 0.66 17.38 16 16 O -0.51 -18.00 14.16 -3.33 -0.05 -18.05 16 17 N -0.63 -15.80 5.31 -304.76 -1.62 -17.42 16 18 C 0.15 3.41 6.27 38.32 0.24 3.65 16 19 C -0.14 -3.45 8.63 22.36 0.19 -3.26 16 20 C -0.06 -1.32 9.67 22.50 0.22 -1.11 16 21 C -0.06 -1.11 5.87 -20.07 -0.12 -1.22 16 22 C 0.09 1.83 7.34 87.45 0.64 2.47 16 23 N -0.50 -10.43 10.14 -189.90 -1.92 -12.35 16 24 C 0.02 0.29 11.25 83.73 0.94 1.23 16 25 C -0.24 -2.55 11.35 66.79 0.76 -1.79 16 26 S 0.12 1.48 22.39 -56.49 -1.26 0.21 16 27 C -0.07 -1.05 9.60 22.50 0.22 -0.84 16 28 C -0.13 -2.07 9.94 22.36 0.22 -1.84 16 29 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 30 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.41 16.06 8.01 -92.71 -0.74 15.31 16 34 H 0.43 9.16 8.29 -92.70 -0.77 8.39 16 35 H 0.13 3.59 6.41 -2.91 -0.02 3.57 16 36 H 0.13 3.12 7.81 -2.91 -0.02 3.10 16 37 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.16 1.52 7.29 -2.91 -0.02 1.50 16 40 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -66.45 364.59 0.82 -65.63 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.39 Total: 28.04 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 6.11 Total: 15.07 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -5.57 Total: -110.65 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.10 Total: -41.99 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.26 Total: 0.21 kcal Total: -66.45 0.82 -65.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123175923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.564 kcal (2) G-P(sol) polarization free energy of solvation -66.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds