Wall clock time and date at job start Wed Apr 1 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46942 * 2 1 4 4 C 1.50697 * 109.47468 * 120.00061 * 2 1 3 5 5 H 1.07994 * 120.00065 * 119.99858 * 4 2 1 6 6 C 1.37876 * 119.99806 * 300.00328 * 4 2 1 7 7 N 1.31515 * 120.00004 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00326 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46964 * 90.00008 * 8 6 4 10 10 H 1.48495 * 109.47501 * 210.00060 * 8 6 4 11 11 H 1.48503 * 109.47111 * 330.00278 * 8 6 4 12 12 N 1.46501 * 109.47230 * 240.00238 * 2 1 3 13 13 C 1.34778 * 119.99963 * 84.99814 * 12 2 1 14 14 O 1.21366 * 120.00025 * 0.02562 * 13 12 2 15 15 C 1.49301 * 119.99961 * 179.97438 * 13 12 2 16 16 O 1.21388 * 120.00316 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99961 * 180.02562 * 15 13 12 18 18 C 1.38700 * 119.99753 * 180.02562 * 17 15 13 19 19 N 1.29715 * 125.30711 * 180.02562 * 18 17 15 20 20 C 1.32479 * 117.01967 * 180.02562 * 19 18 17 21 21 C 1.48313 * 122.31483 * 179.97438 * 20 19 18 22 22 C 1.39383 * 120.12885 * 179.74692 * 21 20 19 23 23 C 1.38006 * 119.87482 * 180.27820 * 22 21 20 24 24 C 1.38328 * 120.12183 * 359.97438 * 23 22 21 25 25 C 1.38333 * 120.26021 * 0.04212 * 24 23 22 26 26 C 1.38001 * 120.12161 * 359.95785 * 25 24 23 27 27 C 1.34606 * 115.37438 * 0.27217 * 20 19 18 28 28 S 1.76107 * 125.30871 * 0.02562 * 18 17 15 29 29 H 1.08997 * 109.47241 * 299.99688 * 1 2 3 30 30 H 1.09005 * 109.47290 * 60.00078 * 1 2 3 31 31 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00349 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00023 * 264.99451 * 12 2 1 34 34 H 0.97000 * 120.00014 * 359.97438 * 17 15 13 35 35 H 1.08005 * 120.05843 * 0.25732 * 22 21 20 36 36 H 1.07995 * 119.93409 * 180.02562 * 23 22 21 37 37 H 1.08006 * 119.86999 * 180.02562 * 24 23 22 38 38 H 1.07993 * 119.93831 * 179.97438 * 25 24 23 39 39 H 1.08005 * 120.06490 * 180.02562 * 26 25 24 40 40 H 1.08002 * 125.89529 * 179.70472 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8588 1.1595 -2.4115 15 6 2.6453 -0.7218 -3.5761 16 8 2.9340 -1.8995 -3.5217 17 7 2.7745 -0.0492 -4.7369 18 6 3.2368 -0.7031 -5.8694 19 7 3.4006 -0.1584 -7.0352 20 6 3.8527 -0.9385 -8.0058 21 6 4.0823 -0.4383 -9.3830 22 6 4.5643 -1.2982 -10.3684 23 6 4.7814 -0.8258 -11.6468 24 6 4.5212 0.4983 -11.9511 25 6 4.0430 1.3564 -10.9772 26 6 3.8221 0.8951 -9.6955 27 6 4.0833 -2.2180 -7.6573 28 16 3.6930 -2.4022 -5.9488 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9033 -0.5281 4.4375 33 1 2.2491 -1.6317 -1.1527 34 1 2.5434 0.8918 -4.7805 35 1 4.7677 -2.3322 -10.1318 36 1 5.1545 -1.4913 -12.4111 37 1 4.6922 0.8636 -12.9530 38 1 3.8420 2.3892 -11.2204 39 1 3.4484 1.5658 -8.9359 40 1 4.4469 -2.9968 -8.3114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123231676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:26 Heat of formation + Delta-G solvation = 16.726126 kcal Electronic energy + Delta-G solvation = -25649.409743 eV Core-core repulsion = 21749.686422 eV Total energy + Delta-G solvation = -3899.723320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04831 -40.20566 -38.86370 -38.38981 -35.83477 -34.97978 -32.55221 -32.05279 -31.25449 -30.24833 -29.07134 -26.32185 -25.34822 -24.54588 -22.76385 -22.41293 -21.59991 -20.57448 -19.86735 -18.69377 -18.30188 -17.15531 -16.85259 -16.75522 -16.29036 -15.98412 -15.60562 -15.51164 -14.85807 -14.76266 -14.64143 -14.23399 -13.83590 -13.74358 -13.46686 -13.25765 -13.09788 -12.96918 -12.37239 -12.32752 -12.03770 -11.70056 -11.50347 -11.40929 -11.36962 -11.10763 -10.91273 -10.32191 -10.01120 -9.86039 -9.67483 -9.49258 -9.41137 -9.29507 -9.23344 -8.92444 -8.52897 -8.13210 -6.30835 -4.35765 0.23150 0.82792 0.84722 1.12009 1.50460 1.58882 2.00778 2.66454 3.15271 3.25896 3.28332 3.29619 3.55474 3.66915 4.08985 4.21122 4.54759 4.65249 4.67337 4.79147 4.91915 5.00479 5.02549 5.14627 5.33868 5.39646 5.61337 5.76027 5.81025 6.12295 6.15741 6.16442 6.19559 6.23638 6.34588 6.42558 6.61770 6.66006 6.80862 6.99795 7.25993 7.28277 7.48100 7.81174 8.25646 8.30776 8.68065 9.26755 10.80881 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.001976 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.248101 B =14166.874983 C =14875.512072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.541 4.541 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.274 1.274 10 H -0.292 1.292 11 H -0.261 1.261 12 N -0.655 5.655 13 C 0.506 3.494 14 O -0.527 6.527 15 C 0.509 3.491 16 O -0.482 6.482 17 N -0.599 5.599 18 C 0.280 3.720 19 N -0.498 5.498 20 C 0.126 3.874 21 C -0.019 4.019 22 C -0.104 4.104 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.087 4.087 27 C -0.296 4.296 28 S 0.212 5.788 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.269 0.731 33 H 0.410 0.590 34 H 0.437 0.563 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -0.924 -27.758 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.132 3.868 3 H 0.074 0.926 4 C -0.579 4.579 5 H 0.102 0.898 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.714 3.286 9 H -0.201 1.201 10 H -0.219 1.219 11 H -0.186 1.186 12 N -0.304 5.304 13 C 0.283 3.717 14 O -0.404 6.404 15 C 0.291 3.709 16 O -0.354 6.354 17 N -0.251 5.251 18 C -0.089 4.089 19 N -0.221 5.221 20 C -0.005 4.005 21 C -0.021 4.021 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.106 4.106 27 C -0.436 4.436 28 S 0.463 5.537 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.246 0.754 34 H 0.278 0.722 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.476 -1.225 -26.652 26.905 hybrid contribution -0.448 1.087 -0.627 1.332 sum 3.028 -0.138 -27.278 27.446 Atomic orbital electron populations 1.22481 0.98492 1.01452 0.99789 1.19383 0.90689 0.94856 0.81834 0.92602 1.20958 1.33934 1.14853 0.88180 0.89782 1.24813 0.95403 0.96721 0.95411 1.69853 1.44366 1.39877 0.98125 0.86891 0.80586 0.83437 0.77692 1.20122 1.21925 1.18614 1.46156 1.61017 1.14885 1.08360 1.19218 0.81328 0.87133 0.83980 1.90777 1.50463 1.14861 1.84348 1.21183 0.78231 0.87101 0.84417 1.90710 1.46113 1.15188 1.83396 1.42462 1.61393 1.15779 1.05443 1.24012 1.00831 0.94716 0.89336 1.66159 1.20923 1.36925 0.98045 1.18168 1.00720 0.88862 0.92706 1.18123 1.00522 0.93980 0.89500 1.21136 0.99034 0.99411 0.92705 1.21035 1.00736 0.95941 0.96279 1.21252 0.99036 0.93847 0.99400 1.21155 0.99826 0.99979 0.93133 1.21337 0.97737 0.94819 0.96713 1.27317 1.13331 1.01104 1.01843 1.86008 1.60075 1.05714 1.01892 0.92869 0.94286 0.92324 0.92059 0.75365 0.72151 0.85726 0.85746 0.86020 0.85767 0.84910 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.96 37.16 0.33 -3.07 16 2 C 0.23 5.23 2.15 -69.08 -0.15 5.08 16 3 H 0.06 1.34 6.63 -51.93 -0.34 0.99 16 4 C -0.54 -13.98 9.31 -34.44 -0.32 -14.31 16 5 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.38 13.96 55.43 0.77 -24.61 16 8 Si 0.88 20.62 24.37 -169.99 -4.14 16.48 16 9 H -0.27 -6.19 6.87 56.52 0.39 -5.80 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 12 N -0.65 -12.38 5.06 -55.41 -0.28 -12.66 16 13 C 0.51 8.80 7.85 -11.65 -0.09 8.71 16 14 O -0.53 -10.12 16.14 5.48 0.09 -10.03 16 15 C 0.51 7.58 7.84 -11.65 -0.09 7.49 16 16 O -0.48 -7.50 13.98 5.46 0.08 -7.43 16 17 N -0.60 -7.87 5.39 -12.31 -0.07 -7.94 16 18 C 0.28 3.70 8.38 -87.57 -0.73 2.97 16 19 N -0.50 -6.55 9.90 -10.46 -0.10 -6.65 16 20 C 0.13 1.49 6.61 -84.73 -0.56 0.93 16 21 C -0.02 -0.20 5.88 -104.90 -0.62 -0.81 16 22 C -0.10 -0.87 9.47 -39.24 -0.37 -1.24 16 23 C -0.12 -0.88 10.03 -39.63 -0.40 -1.28 16 24 C -0.12 -0.84 10.04 -39.51 -0.40 -1.24 16 25 C -0.12 -1.00 10.03 -39.63 -0.40 -1.40 16 26 C -0.09 -0.88 9.63 -39.24 -0.38 -1.26 16 27 C -0.30 -3.03 10.58 29.45 0.31 -2.71 16 28 S 0.21 2.51 20.53 -107.50 -2.21 0.31 16 29 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.41 7.25 8.01 -40.82 -0.33 6.92 16 34 H 0.44 5.22 8.29 -40.82 -0.34 4.88 16 35 H 0.12 0.79 6.59 -52.48 -0.35 0.44 16 36 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 1.38 7.67 -52.48 -0.40 0.97 16 40 H 0.18 1.28 6.81 -52.49 -0.36 0.92 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -29.95 356.06 -8.45 -38.40 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.00 Total: 8.80 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -3.96 Total: -0.04 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.32 Total: -51.86 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.16 Total: -17.46 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.14 Total: 16.48 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.21 Total: 0.31 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.95 -8.45 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.130 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds