Wall clock time and date at job start Wed Apr 1 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46942 * 2 1 4 4 C 1.50697 * 109.47468 * 120.00061 * 2 1 3 5 5 H 1.07994 * 120.00065 * 119.99858 * 4 2 1 6 6 C 1.37876 * 119.99806 * 300.00328 * 4 2 1 7 7 N 1.31515 * 120.00004 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00326 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46964 * 90.00008 * 8 6 4 10 10 H 1.48495 * 109.47501 * 210.00060 * 8 6 4 11 11 H 1.48503 * 109.47111 * 330.00278 * 8 6 4 12 12 N 1.46501 * 109.47230 * 240.00238 * 2 1 3 13 13 C 1.34778 * 119.99963 * 84.99814 * 12 2 1 14 14 O 1.21366 * 120.00025 * 0.02562 * 13 12 2 15 15 C 1.49301 * 119.99961 * 179.97438 * 13 12 2 16 16 O 1.21388 * 120.00316 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99961 * 180.02562 * 15 13 12 18 18 C 1.38700 * 119.99753 * 180.02562 * 17 15 13 19 19 N 1.29715 * 125.30711 * 180.02562 * 18 17 15 20 20 C 1.32479 * 117.01967 * 180.02562 * 19 18 17 21 21 C 1.48313 * 122.31483 * 179.97438 * 20 19 18 22 22 C 1.39383 * 120.12885 * 179.74692 * 21 20 19 23 23 C 1.38006 * 119.87482 * 180.27820 * 22 21 20 24 24 C 1.38328 * 120.12183 * 359.97438 * 23 22 21 25 25 C 1.38333 * 120.26021 * 0.04212 * 24 23 22 26 26 C 1.38001 * 120.12161 * 359.95785 * 25 24 23 27 27 C 1.34606 * 115.37438 * 0.27217 * 20 19 18 28 28 S 1.76107 * 125.30871 * 0.02562 * 18 17 15 29 29 H 1.08997 * 109.47241 * 299.99688 * 1 2 3 30 30 H 1.09005 * 109.47290 * 60.00078 * 1 2 3 31 31 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00349 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00023 * 264.99451 * 12 2 1 34 34 H 0.97000 * 120.00014 * 359.97438 * 17 15 13 35 35 H 1.08005 * 120.05843 * 0.25732 * 22 21 20 36 36 H 1.07995 * 119.93409 * 180.02562 * 23 22 21 37 37 H 1.08006 * 119.86999 * 180.02562 * 24 23 22 38 38 H 1.07993 * 119.93831 * 179.97438 * 25 24 23 39 39 H 1.08005 * 120.06490 * 180.02562 * 26 25 24 40 40 H 1.08002 * 125.89529 * 179.70472 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8588 1.1595 -2.4115 15 6 2.6453 -0.7218 -3.5761 16 8 2.9340 -1.8995 -3.5217 17 7 2.7745 -0.0492 -4.7369 18 6 3.2368 -0.7031 -5.8694 19 7 3.4006 -0.1584 -7.0352 20 6 3.8527 -0.9385 -8.0058 21 6 4.0823 -0.4383 -9.3830 22 6 4.5643 -1.2982 -10.3684 23 6 4.7814 -0.8258 -11.6468 24 6 4.5212 0.4983 -11.9511 25 6 4.0430 1.3564 -10.9772 26 6 3.8221 0.8951 -9.6955 27 6 4.0833 -2.2180 -7.6573 28 16 3.6930 -2.4022 -5.9488 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9033 -0.5281 4.4375 33 1 2.2491 -1.6317 -1.1527 34 1 2.5434 0.8918 -4.7805 35 1 4.7677 -2.3322 -10.1318 36 1 5.1545 -1.4913 -12.4111 37 1 4.6922 0.8636 -12.9530 38 1 3.8420 2.3892 -11.2204 39 1 3.4484 1.5658 -8.9359 40 1 4.4469 -2.9968 -8.3114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123231676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:26 Heat of formation + Delta-G solvation = -3.195603 kcal Electronic energy + Delta-G solvation = -25650.273614 eV Core-core repulsion = 21749.686422 eV Total energy + Delta-G solvation = -3900.587191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26826 -41.09930 -40.07510 -39.29411 -37.30053 -36.28125 -34.45557 -32.82136 -31.96778 -31.85702 -29.88820 -27.50803 -27.20351 -25.56905 -23.65259 -23.19105 -22.82988 -21.88230 -21.18327 -19.85501 -19.41963 -18.46152 -18.09142 -17.66857 -17.53246 -17.32887 -17.20372 -16.21222 -16.17271 -16.01812 -15.41486 -15.20461 -15.13870 -14.94371 -14.79699 -14.38300 -14.15299 -14.01472 -13.79338 -13.70441 -13.43224 -13.28678 -12.79120 -12.52298 -12.38520 -12.15600 -12.03016 -11.88880 -11.58848 -11.34108 -10.96016 -10.95031 -10.88215 -10.51418 -10.21091 -10.14757 -9.84303 -8.95310 -8.38046 -6.46522 -0.69801 -0.11527 -0.06719 0.47009 0.51607 0.63351 0.88120 1.30963 1.38881 1.47335 1.73020 2.00892 2.26415 2.29841 2.97597 3.01103 3.15039 3.28444 3.90586 4.11180 4.14430 4.22829 4.33882 4.39015 4.46820 4.50629 4.58613 4.61952 4.71259 4.83038 4.91602 5.08336 5.11892 5.17324 5.31114 5.32533 5.43150 5.57238 5.61332 5.62941 5.95349 6.07708 6.17108 6.45044 6.55614 6.59043 6.82981 7.20473 8.76950 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.001976 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.248101 B =14166.874983 C =14875.512072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.042 0.958 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.940 3.060 9 H -0.258 1.258 10 H -0.294 1.294 11 H -0.253 1.253 12 N -0.660 5.660 13 C 0.512 3.488 14 O -0.542 6.542 15 C 0.522 3.478 16 O -0.490 6.490 17 N -0.589 5.589 18 C 0.255 3.745 19 N -0.506 5.506 20 C 0.106 3.894 21 C -0.043 4.043 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.109 4.109 27 C -0.274 4.274 28 S 0.209 5.791 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.271 0.729 33 H 0.416 0.584 34 H 0.441 0.559 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -0.959 -30.873 31.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.136 3.864 3 H 0.060 0.940 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.570 5.570 8 Si 0.767 3.233 9 H -0.184 1.184 10 H -0.221 1.221 11 H -0.177 1.177 12 N -0.310 5.310 13 C 0.291 3.709 14 O -0.421 6.421 15 C 0.302 3.698 16 O -0.363 6.363 17 N -0.241 5.241 18 C -0.113 4.113 19 N -0.228 5.228 20 C -0.024 4.024 21 C -0.045 4.045 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.128 4.128 27 C -0.414 4.414 28 S 0.460 5.540 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.283 0.717 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.340 -1.256 -29.825 30.038 hybrid contribution -0.290 1.050 0.134 1.097 sum 3.050 -0.206 -29.692 29.849 Atomic orbital electron populations 1.22388 0.96810 1.02243 1.00317 1.19078 0.91903 0.93718 0.81693 0.94002 1.21172 1.32930 1.13896 0.89804 0.92611 1.25590 0.96791 0.99560 0.95142 1.69976 1.46363 1.41881 0.98756 0.85987 0.79657 0.80048 0.77641 1.18402 1.22150 1.17700 1.45940 1.61732 1.15115 1.08173 1.19440 0.80396 0.86791 0.84233 1.90765 1.50902 1.15654 1.84793 1.20405 0.78566 0.86729 0.84073 1.90720 1.46720 1.15268 1.83546 1.42218 1.60921 1.15836 1.05086 1.24089 1.02473 0.95424 0.89325 1.66137 1.20584 1.37811 0.98294 1.18524 1.01300 0.89439 0.93166 1.18277 1.02254 0.94630 0.89388 1.21414 0.98377 1.00105 0.92703 1.21427 0.99736 0.96404 0.96419 1.21631 0.97705 0.93835 1.00281 1.21389 0.99659 1.01101 0.92609 1.21369 0.99028 0.94914 0.97467 1.27647 1.11458 1.01261 1.00996 1.85978 1.59839 1.04902 1.03306 0.93400 0.92557 0.91495 0.91937 0.74742 0.71689 0.83727 0.82938 0.83420 0.84261 0.86387 0.77138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.36 8.96 71.98 0.65 -5.72 16 2 C 0.24 10.61 2.15 44.24 0.10 10.70 16 3 H 0.04 1.99 6.63 -2.39 -0.02 1.97 16 4 C -0.54 -28.34 9.31 25.60 0.24 -28.10 16 5 H 0.06 3.17 7.98 -2.91 -0.02 3.15 16 6 C 0.03 1.60 5.45 84.65 0.46 2.06 16 7 N -0.93 -54.52 13.96 21.45 0.30 -54.22 16 8 Si 0.94 42.22 24.37 68.60 1.67 43.90 16 9 H -0.26 -10.88 6.87 99.48 0.68 -10.20 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.25 -10.92 6.53 99.48 0.65 -10.27 16 12 N -0.66 -24.86 5.06 -447.58 -2.27 -27.12 16 13 C 0.51 17.62 7.85 87.22 0.68 18.30 16 14 O -0.54 -20.52 16.14 -3.30 -0.05 -20.57 16 15 C 0.52 15.33 7.84 87.22 0.68 16.01 16 16 O -0.49 -15.02 13.98 -3.36 -0.05 -15.07 16 17 N -0.59 -15.35 5.39 -311.21 -1.68 -17.03 16 18 C 0.25 6.65 8.38 179.28 1.50 8.15 16 19 N -0.51 -13.20 9.90 -187.00 -1.85 -15.05 16 20 C 0.11 2.40 6.61 40.90 0.27 2.67 16 21 C -0.04 -0.85 5.88 -20.04 -0.12 -0.97 16 22 C -0.11 -1.52 9.47 22.49 0.21 -1.31 16 23 C -0.12 -1.37 10.03 22.24 0.22 -1.14 16 24 C -0.12 -1.35 10.04 22.31 0.22 -1.13 16 25 C -0.13 -1.93 10.03 22.24 0.22 -1.71 16 26 C -0.11 -2.16 9.63 22.49 0.22 -1.95 16 27 C -0.27 -5.07 10.58 66.99 0.71 -4.36 16 28 S 0.21 4.74 20.53 -56.49 -1.16 3.58 16 29 H 0.05 1.95 3.27 -2.39 -0.01 1.95 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.42 14.78 8.01 -92.71 -0.74 14.03 16 34 H 0.44 10.51 8.29 -92.71 -0.77 9.75 16 35 H 0.15 1.33 6.59 -2.91 -0.02 1.31 16 36 H 0.15 0.82 8.06 -2.91 -0.02 0.79 16 37 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.12 2.57 7.67 -2.91 -0.02 2.55 16 40 H 0.21 2.31 6.81 -2.91 -0.02 2.29 16 Total: -1.00 -64.98 356.06 0.73 -64.25 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.46 Total: 25.82 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.27 Total: 11.51 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -5.49 Total: -113.42 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.10 Total: -35.64 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.67 Total: 43.90 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.16 Total: 3.58 kcal Total: -64.98 0.73 -64.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.053 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds