Wall clock time and date at job start Wed Apr 1 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47036 * 2 1 4 4 C 1.46500 * 120.00251 * 265.09208 * 3 2 1 5 5 C 1.50701 * 109.47265 * 262.22866 * 4 3 2 6 6 H 1.08002 * 119.99734 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00287 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46887 * 59.99982 * 9 7 5 11 11 H 1.48498 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.46960 * 300.00172 * 9 7 5 13 13 C 1.34777 * 120.00050 * 85.09097 * 3 2 1 14 14 O 1.21702 * 120.00048 * 1.95303 * 13 3 2 15 15 C 1.46587 * 119.99973 * 181.95636 * 13 3 2 16 16 C 1.36649 * 125.45644 * 172.14474 * 15 13 3 17 17 C 1.37471 * 113.29882 * 179.97438 * 16 15 13 18 18 C 1.50695 * 122.45379 * 179.97438 * 17 16 15 19 19 S 1.81405 * 109.47110 * 90.02259 * 18 17 16 20 20 C 1.81397 * 101.92200 * 180.02562 * 19 18 17 21 21 O 1.42103 * 108.57877 * 294.49104 * 19 18 17 22 22 O 1.42100 * 108.57843 * 65.51216 * 19 18 17 23 23 C 1.33820 * 115.09718 * 0.24516 * 17 16 15 24 24 C 1.50703 * 124.52230 * 179.75171 * 23 17 16 25 25 S 1.70619 * 110.95413 * 359.62223 * 23 17 16 26 26 H 1.09004 * 109.47117 * 60.00209 * 1 2 3 27 27 H 1.09001 * 109.46552 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47218 * 299.99740 * 1 2 3 29 29 H 1.09001 * 109.46830 * 240.00174 * 2 1 3 30 30 H 1.08999 * 109.46933 * 120.00252 * 2 1 3 31 31 H 1.09003 * 109.47149 * 22.22874 * 4 3 2 32 32 H 1.08997 * 109.47436 * 142.22869 * 4 3 2 33 33 H 0.97002 * 120.00283 * 179.97438 * 8 7 5 34 34 H 1.08003 * 123.35196 * 359.93758 * 16 15 13 35 35 H 1.08995 * 109.47303 * 210.02473 * 18 17 16 36 36 H 1.08999 * 109.47118 * 330.02793 * 18 17 16 37 37 H 1.09001 * 109.47439 * 59.99871 * 20 19 18 38 38 H 1.08993 * 109.47189 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.47079 * 300.00459 * 20 19 18 40 40 H 1.08999 * 109.46543 * 89.99894 * 24 23 17 41 41 H 1.08998 * 109.46965 * 209.99791 * 24 23 17 42 42 H 1.09002 * 109.46888 * 330.00166 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3649 2.0357 -1.2640 5 6 3.8538 1.9522 -1.4813 6 1 4.4794 1.4611 -0.7507 7 6 4.4173 2.5027 -2.6129 8 7 3.6554 3.1002 -3.5028 9 14 6.2630 2.3998 -2.8818 10 1 6.6772 0.9747 -2.9317 11 1 6.6143 3.0631 -4.1631 12 1 6.9647 3.0804 -1.7640 13 6 2.1488 2.0498 1.1629 14 8 1.8949 1.4948 2.2158 15 6 2.5965 3.4457 1.1596 16 6 2.6228 4.2723 2.2474 17 6 3.0899 5.5331 1.9610 18 6 3.2047 6.6102 3.0086 19 16 4.8452 6.5319 3.7790 20 6 4.7599 7.8879 4.9809 21 8 4.9544 5.3053 4.4880 22 8 5.8216 6.8559 2.7987 23 6 3.4297 5.7357 0.6826 24 6 3.9597 7.0361 0.1356 25 16 3.1862 4.3243 -0.2446 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8494 1.5368 -2.0848 32 1 2.0613 3.0818 -1.2267 33 1 4.0519 3.4879 -4.2987 34 1 2.3075 3.9658 3.2338 35 1 3.0682 7.5861 2.5429 36 1 2.4387 6.4603 3.7694 37 1 3.9480 7.7001 5.6836 38 1 5.7029 7.9523 5.5236 39 1 4.5774 8.8264 4.4575 40 1 5.0470 7.0455 0.2106 41 1 3.6667 7.1370 -0.9094 42 1 3.5486 7.8663 0.7100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133783780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:41 Heat of formation + Delta-G solvation = -74.363941 kcal Electronic energy + Delta-G solvation = -26745.140092 eV Core-core repulsion = 22944.618010 eV Total energy + Delta-G solvation = -3800.522082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.17012 -37.88915 -36.84077 -35.84687 -35.24323 -33.10864 -31.94009 -30.46607 -30.15949 -29.30898 -27.26402 -25.81204 -23.45364 -23.26393 -21.83421 -19.48963 -18.66702 -17.69952 -17.30520 -16.73513 -16.62659 -16.18096 -15.82718 -15.55730 -15.15156 -14.61355 -14.48311 -14.02781 -13.52703 -13.43943 -13.32879 -13.26692 -13.01858 -12.74791 -12.64168 -12.49130 -12.22606 -12.03533 -11.91144 -11.85307 -11.72691 -11.59181 -11.56054 -11.21597 -11.09395 -11.01565 -10.92774 -10.56509 -10.55601 -10.24466 -9.98138 -9.28743 -9.20423 -8.80311 -8.08086 -7.76960 -7.56147 -6.40828 -4.43928 -0.03716 1.28198 2.41900 2.73692 2.83471 2.94453 3.19056 3.22384 3.28439 3.73651 3.86638 3.97650 3.99387 4.20979 4.62336 4.63027 4.81912 4.93695 5.02220 5.32374 5.41909 5.43358 5.49274 5.65692 5.75631 5.77901 5.84319 5.92424 6.05558 6.20130 6.32754 6.36605 6.47386 6.51043 6.60869 6.75030 6.86879 6.96178 7.38520 7.56177 7.72157 8.17743 8.57991 8.94530 9.17285 10.62734 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004754 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.441058 B = 5888.331265 C = 7396.513831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.598 5.598 4 C 0.227 3.773 5 C -0.540 4.540 6 H 0.071 0.929 7 C 0.077 3.923 8 N -0.876 5.876 9 Si 0.889 3.111 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.591 3.409 14 O -0.563 6.563 15 C -0.294 4.294 16 C -0.063 4.063 17 C -0.150 4.150 18 C -0.525 4.525 19 S 2.405 3.595 20 C -0.666 4.666 21 O -0.933 6.933 22 O -0.934 6.934 23 C -0.279 4.279 24 C -0.086 4.086 25 S 0.431 5.569 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.272 0.728 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 9.475 7.819 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.328 5.328 4 C 0.105 3.895 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.129 4.129 8 N -0.512 5.512 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.380 3.620 14 O -0.445 6.445 15 C -0.416 4.416 16 C -0.097 4.097 17 C -0.165 4.165 18 C -0.656 4.656 19 S 2.587 3.413 20 C -0.814 4.814 21 O -0.931 6.931 22 O -0.931 6.931 23 C -0.400 4.400 24 C -0.144 4.144 25 S 0.709 5.291 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.183 8.442 6.494 10.872 hybrid contribution 0.162 1.086 1.537 1.889 sum -2.021 9.528 8.032 12.624 Atomic orbital electron populations 1.22132 0.96738 1.01376 1.02073 1.21257 0.93466 0.82991 1.02694 1.48062 1.63460 1.13623 1.07669 1.19666 0.96729 0.92194 0.80960 1.21548 0.92035 1.37873 1.06797 0.91126 1.24910 0.98863 0.94148 0.95008 1.69892 1.35866 1.35087 1.10329 0.86640 0.84561 0.79123 0.78187 1.19657 1.20660 1.19190 1.16951 0.77008 0.84418 0.83624 1.90705 1.53439 1.69122 1.31260 1.24617 1.16681 0.99764 1.00499 1.20200 0.99249 0.91306 0.98976 1.17259 1.12240 0.94229 0.92763 1.28843 1.22027 1.05903 1.08793 1.08666 0.78715 0.76983 0.76936 1.30388 1.11430 1.20850 1.18684 1.93601 1.85743 1.40300 1.73420 1.93574 1.56311 1.84825 1.58356 1.25828 1.06103 1.07084 1.00997 1.20376 1.01838 0.91638 1.00578 1.86126 1.49073 0.91721 1.02175 0.92646 0.92255 0.92576 0.90219 0.90929 0.92752 0.94336 0.91824 0.84040 0.84912 0.84831 0.85597 0.85651 0.85637 0.89793 0.91302 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.21 37.16 0.38 -2.19 16 2 C 0.12 2.16 6.06 -4.04 -0.02 2.14 16 3 N -0.60 -12.76 2.49 -176.64 -0.44 -13.20 16 4 C 0.23 5.10 4.72 -5.19 -0.02 5.07 16 5 C -0.54 -13.06 6.94 -34.44 -0.24 -13.30 16 6 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.08 1.86 5.02 -17.82 -0.09 1.77 16 8 N -0.88 -21.44 13.29 55.43 0.74 -20.70 16 9 Si 0.89 19.48 29.54 -169.99 -5.02 14.46 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.59 13.44 7.53 -12.89 -0.10 13.34 16 14 O -0.56 -13.67 16.50 5.19 0.09 -13.59 16 15 C -0.29 -6.32 6.23 -36.79 -0.23 -6.55 16 16 C -0.06 -1.23 9.80 -40.44 -0.40 -1.63 16 17 C -0.15 -2.56 5.04 -106.45 -0.54 -3.10 16 18 C -0.53 -6.08 5.77 36.00 0.21 -5.87 16 19 S 2.40 30.18 5.34 -107.50 -0.57 29.61 16 20 C -0.67 -4.70 10.62 101.05 1.07 -3.63 16 21 O -0.93 -15.81 18.10 -57.83 -1.05 -16.86 16 22 O -0.93 -14.87 18.05 -57.83 -1.04 -15.91 16 23 C -0.28 -4.97 6.28 -35.86 -0.23 -5.19 16 24 C -0.09 -1.26 9.98 36.01 0.36 -0.90 16 25 S 0.43 8.86 15.80 -107.50 -1.70 7.16 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 30 H 0.07 1.34 7.55 -51.93 -0.39 0.95 16 31 H 0.05 1.24 8.01 -51.93 -0.42 0.83 16 32 H 0.04 0.90 4.50 -22.37 -0.10 0.80 16 33 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 34 H 0.14 2.61 8.06 -52.48 -0.42 2.19 16 35 H 0.13 1.12 6.53 -51.93 -0.34 0.78 16 36 H 0.13 1.14 8.13 -51.92 -0.42 0.72 16 37 H 0.13 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -32.76 373.20 -9.00 -41.75 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.77 Total: 1.70 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.05 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.30 Total: -33.90 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -2.00 Total: -46.36 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 39.04 SS G_CDS: -2.27 Total: 36.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.76 -9.00 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133783780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.611 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds