Wall clock time and date at job start Wed Apr 1 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47036 * 2 1 4 4 C 1.46500 * 120.00251 * 265.09208 * 3 2 1 5 5 C 1.50701 * 109.47265 * 262.22866 * 4 3 2 6 6 H 1.08002 * 119.99734 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00287 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46887 * 59.99982 * 9 7 5 11 11 H 1.48498 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.46960 * 300.00172 * 9 7 5 13 13 C 1.34777 * 120.00050 * 85.09097 * 3 2 1 14 14 O 1.21702 * 120.00048 * 1.95303 * 13 3 2 15 15 C 1.46587 * 119.99973 * 181.95636 * 13 3 2 16 16 C 1.36649 * 125.45644 * 172.14474 * 15 13 3 17 17 C 1.37471 * 113.29882 * 179.97438 * 16 15 13 18 18 C 1.50695 * 122.45379 * 179.97438 * 17 16 15 19 19 S 1.81405 * 109.47110 * 90.02259 * 18 17 16 20 20 C 1.81397 * 101.92200 * 180.02562 * 19 18 17 21 21 O 1.42103 * 108.57877 * 294.49104 * 19 18 17 22 22 O 1.42100 * 108.57843 * 65.51216 * 19 18 17 23 23 C 1.33820 * 115.09718 * 0.24516 * 17 16 15 24 24 C 1.50703 * 124.52230 * 179.75171 * 23 17 16 25 25 S 1.70619 * 110.95413 * 359.62223 * 23 17 16 26 26 H 1.09004 * 109.47117 * 60.00209 * 1 2 3 27 27 H 1.09001 * 109.46552 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47218 * 299.99740 * 1 2 3 29 29 H 1.09001 * 109.46830 * 240.00174 * 2 1 3 30 30 H 1.08999 * 109.46933 * 120.00252 * 2 1 3 31 31 H 1.09003 * 109.47149 * 22.22874 * 4 3 2 32 32 H 1.08997 * 109.47436 * 142.22869 * 4 3 2 33 33 H 0.97002 * 120.00283 * 179.97438 * 8 7 5 34 34 H 1.08003 * 123.35196 * 359.93758 * 16 15 13 35 35 H 1.08995 * 109.47303 * 210.02473 * 18 17 16 36 36 H 1.08999 * 109.47118 * 330.02793 * 18 17 16 37 37 H 1.09001 * 109.47439 * 59.99871 * 20 19 18 38 38 H 1.08993 * 109.47189 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.47079 * 300.00459 * 20 19 18 40 40 H 1.08999 * 109.46543 * 89.99894 * 24 23 17 41 41 H 1.08998 * 109.46965 * 209.99791 * 24 23 17 42 42 H 1.09002 * 109.46888 * 330.00166 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3649 2.0357 -1.2640 5 6 3.8538 1.9522 -1.4813 6 1 4.4794 1.4611 -0.7507 7 6 4.4173 2.5027 -2.6129 8 7 3.6554 3.1002 -3.5028 9 14 6.2630 2.3998 -2.8818 10 1 6.6772 0.9747 -2.9317 11 1 6.6143 3.0631 -4.1631 12 1 6.9647 3.0804 -1.7640 13 6 2.1488 2.0498 1.1629 14 8 1.8949 1.4948 2.2158 15 6 2.5965 3.4457 1.1596 16 6 2.6228 4.2723 2.2474 17 6 3.0899 5.5331 1.9610 18 6 3.2047 6.6102 3.0086 19 16 4.8452 6.5319 3.7790 20 6 4.7599 7.8879 4.9809 21 8 4.9544 5.3053 4.4880 22 8 5.8216 6.8559 2.7987 23 6 3.4297 5.7357 0.6826 24 6 3.9597 7.0361 0.1356 25 16 3.1862 4.3243 -0.2446 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8494 1.5368 -2.0848 32 1 2.0613 3.0818 -1.2267 33 1 4.0519 3.4879 -4.2987 34 1 2.3075 3.9658 3.2338 35 1 3.0682 7.5861 2.5429 36 1 2.4387 6.4603 3.7694 37 1 3.9480 7.7001 5.6836 38 1 5.7029 7.9523 5.5236 39 1 4.5774 8.8264 4.4575 40 1 5.0470 7.0455 0.2106 41 1 3.6667 7.1370 -0.9094 42 1 3.5486 7.8663 0.7100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133783780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:40 Heat of formation + Delta-G solvation = -97.357875 kcal Electronic energy + Delta-G solvation = -26746.137184 eV Core-core repulsion = 22944.618010 eV Total energy + Delta-G solvation = -3801.519174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86116 -39.31259 -37.91653 -36.99788 -36.90512 -34.88367 -33.40442 -31.93443 -31.08906 -30.11794 -29.04198 -27.17243 -25.10039 -24.86056 -23.29173 -20.93035 -19.74839 -19.19011 -18.98299 -18.51894 -17.58524 -17.46640 -17.01865 -16.86450 -16.60326 -16.34452 -16.08755 -15.46717 -14.77980 -14.71410 -14.50122 -14.30613 -14.20323 -14.02231 -13.88779 -13.86719 -13.60954 -13.44991 -13.20028 -13.09259 -12.95988 -12.93134 -12.81209 -12.72956 -12.71517 -12.51245 -12.20062 -12.01282 -11.85402 -11.81517 -11.58887 -11.01969 -10.76448 -10.63711 -9.74386 -9.29040 -9.13873 -8.26495 -6.33833 -0.94429 -0.26091 0.85601 1.32368 1.39028 1.42137 1.44014 1.49834 1.97069 2.18813 2.30235 2.40890 2.86692 3.05465 3.14479 3.65774 3.79024 3.98968 4.11290 4.13178 4.24098 4.30894 4.36322 4.40806 4.50085 4.61834 4.69905 4.74319 4.82423 4.86841 4.95750 4.98177 5.04006 5.07738 5.14183 5.28062 5.31464 5.57834 5.60418 5.77160 5.88743 6.41122 6.69594 7.18599 7.30919 8.77119 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004754 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.441058 B = 5888.331265 C = 7396.513831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.599 5.599 4 C 0.236 3.764 5 C -0.548 4.548 6 H 0.048 0.952 7 C 0.055 3.945 8 N -0.891 5.891 9 Si 0.926 3.074 10 H -0.272 1.272 11 H -0.270 1.270 12 H -0.277 1.277 13 C 0.582 3.418 14 O -0.590 6.590 15 C -0.325 4.325 16 C -0.063 4.063 17 C -0.153 4.153 18 C -0.527 4.527 19 S 2.389 3.611 20 C -0.629 4.629 21 O -0.994 6.994 22 O -0.980 6.980 23 C -0.267 4.267 24 C -0.091 4.091 25 S 0.373 5.627 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.275 0.725 34 H 0.146 0.854 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.162 0.838 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 12.558 9.154 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 N -0.328 5.328 4 C 0.113 3.887 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.150 4.150 8 N -0.528 5.528 9 Si 0.751 3.249 10 H -0.198 1.198 11 H -0.194 1.194 12 H -0.202 1.202 13 C 0.372 3.628 14 O -0.475 6.475 15 C -0.446 4.446 16 C -0.098 4.098 17 C -0.166 4.166 18 C -0.657 4.657 19 S 2.578 3.422 20 C -0.782 4.782 21 O -0.991 6.991 22 O -0.977 6.977 23 C -0.388 4.388 24 C -0.149 4.149 25 S 0.650 5.350 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.192 0.808 36 H 0.187 0.813 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.180 0.820 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.667 11.444 7.749 14.076 hybrid contribution 0.300 0.310 1.317 1.386 sum -2.367 11.754 9.067 15.032 Atomic orbital electron populations 1.22027 0.94394 1.03289 1.01362 1.21500 0.95424 0.81551 1.02735 1.48167 1.63009 1.14599 1.07044 1.19494 0.95702 0.92508 0.80973 1.21449 0.92677 1.38239 1.06594 0.93340 1.25244 1.00996 0.93904 0.94820 1.69922 1.36682 1.35575 1.10598 0.86075 0.81809 0.78878 0.78092 1.19752 1.19405 1.20216 1.17251 0.76834 0.85133 0.83580 1.90661 1.55023 1.69901 1.31915 1.24667 1.18674 0.99697 1.01515 1.20557 0.98418 0.92241 0.98587 1.17657 1.10203 0.94702 0.94013 1.28957 1.22563 1.05788 1.08388 1.08538 0.78378 0.77813 0.77453 1.30056 1.13515 1.17958 1.16675 1.93539 1.86484 1.44819 1.74268 1.93524 1.57923 1.85550 1.60680 1.26053 1.04978 1.07003 1.00798 1.20560 1.01567 0.91056 1.01686 1.86055 1.51393 0.94112 1.03421 0.92422 0.89020 0.94066 0.89325 0.91659 0.93496 0.94180 0.91550 0.83599 0.80800 0.81301 0.82511 0.84551 0.81999 0.90267 0.90635 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 10.21 71.98 0.73 -4.00 16 2 C 0.11 4.11 6.06 86.38 0.52 4.64 16 3 N -0.60 -26.67 2.49 -830.97 -2.07 -28.74 16 4 C 0.24 11.02 4.72 85.63 0.40 11.43 16 5 C -0.55 -27.56 6.94 25.60 0.18 -27.39 16 6 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 7 C 0.06 2.72 5.02 84.65 0.42 3.14 16 8 N -0.89 -44.21 13.29 21.45 0.28 -43.93 16 9 Si 0.93 40.45 29.54 68.60 2.03 42.48 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.58 27.69 7.53 86.42 0.65 28.34 16 14 O -0.59 -29.90 16.50 -4.36 -0.07 -29.97 16 15 C -0.32 -14.48 6.23 24.08 0.15 -14.33 16 16 C -0.06 -2.47 9.80 21.72 0.21 -2.25 16 17 C -0.15 -4.98 5.04 -21.05 -0.11 -5.08 16 18 C -0.53 -10.10 5.77 71.23 0.41 -9.69 16 19 S 2.39 54.02 5.34 -56.49 -0.30 53.72 16 20 C -0.63 -5.21 10.62 113.37 1.20 -4.01 16 21 O -0.99 -33.32 18.10 -127.37 -2.30 -35.63 16 22 O -0.98 -29.85 18.05 -127.37 -2.30 -32.15 16 23 C -0.27 -9.26 6.28 24.68 0.15 -9.10 16 24 C -0.09 -2.44 9.98 71.24 0.71 -1.73 16 25 S 0.37 15.79 15.80 -56.49 -0.89 14.89 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 30 H 0.06 2.51 7.55 -2.39 -0.02 2.49 16 31 H 0.05 2.23 8.01 -2.39 -0.02 2.21 16 32 H 0.04 1.94 4.50 -21.19 -0.10 1.85 16 33 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 34 H 0.15 5.45 8.06 -2.91 -0.02 5.43 16 35 H 0.17 1.86 6.53 -2.39 -0.02 1.85 16 36 H 0.17 2.06 8.13 -2.39 -0.02 2.04 16 37 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.16 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.10 1.90 6.57 -2.39 -0.02 1.88 16 Total: -1.00 -76.74 373.20 0.97 -75.77 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.95 Total: 13.58 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 5.65 Total: -30.04 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -1.78 Total: -72.66 kcal Atomic # 8 Polarization: -93.07 SS G_CDS: -4.68 Total: -97.75 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 69.81 SS G_CDS: -1.19 Total: 68.62 kcal Total: -76.74 0.97 -75.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133783780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.587 kcal (2) G-P(sol) polarization free energy of solvation -76.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds