Wall clock time and date at job start Wed Apr 1 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00472 * 2 1 4 4 C 1.52997 * 109.47545 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47337 * 180.02562 * 4 3 2 6 6 O 1.42099 * 110.54433 * 291.62866 * 5 4 3 7 7 O 1.42105 * 110.54067 * 68.37408 * 5 4 3 8 8 N 1.65597 * 104.45134 * 180.02562 * 5 4 3 9 9 C 1.40001 * 120.00046 * 60.86789 * 8 5 4 10 10 C 1.38651 * 120.09795 * 35.50646 * 9 8 5 11 11 C 1.38286 * 120.00453 * 179.69706 * 10 9 8 12 12 C 1.38264 * 120.20267 * 0.59998 * 11 10 9 13 13 C 1.38246 * 120.19929 * 359.67755 * 12 11 10 14 14 C 1.38733 * 119.99173 * 0.02562 * 13 12 11 15 15 S 1.76206 * 120.09955 * 179.97438 * 14 13 12 16 16 C 1.81401 * 103.00117 * 354.00440 * 15 14 13 17 17 H 1.09000 * 109.46802 * 50.33175 * 16 15 14 18 18 C 1.53001 * 109.46914 * 170.32855 * 16 15 14 19 19 C 1.50695 * 109.47241 * 290.33338 * 16 15 14 20 20 H 1.08009 * 120.00163 * 359.97438 * 19 16 15 21 21 C 1.37879 * 120.00036 * 180.02562 * 19 16 15 22 22 N 1.31509 * 119.99982 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99938 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46945 * 89.99699 * 23 21 19 25 25 H 1.48493 * 109.47023 * 209.99997 * 23 21 19 26 26 H 1.48506 * 109.47029 * 329.99972 * 23 21 19 27 27 H 1.09002 * 109.46691 * 60.00227 * 1 2 3 28 28 H 1.08994 * 109.46861 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46822 * 300.00207 * 1 2 3 30 30 H 1.09006 * 109.47003 * 59.99516 * 3 2 1 31 31 H 1.09004 * 109.46879 * 300.00429 * 3 2 1 32 32 H 1.09000 * 109.46756 * 60.00064 * 4 3 2 33 33 H 1.09000 * 109.47175 * 300.00029 * 4 3 2 34 34 H 0.97000 * 119.99705 * 240.87133 * 8 5 4 35 35 H 1.08001 * 119.99145 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.89393 * 180.32168 * 11 10 9 37 37 H 1.08001 * 119.90340 * 179.70326 * 12 11 10 38 38 H 1.08002 * 120.00824 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.47215 * 307.18566 * 18 16 15 40 40 H 1.08998 * 109.46891 * 67.18859 * 18 16 15 41 41 H 1.09000 * 109.46896 * 187.18657 * 18 16 15 42 42 H 0.96999 * 119.99845 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2734 2.8417 0.0014 6 8 4.0288 3.4971 -1.2355 7 8 4.0277 3.4964 1.2385 8 7 5.9064 2.5669 0.0013 9 6 6.4988 1.8692 -1.0580 10 6 6.0207 2.0290 -2.3496 11 6 6.6113 1.3437 -3.3954 12 6 7.6710 0.4884 -3.1562 13 6 8.1508 0.3183 -1.8709 14 6 7.5684 1.0065 -0.8165 15 16 8.1773 0.7913 0.8230 16 6 9.4051 -0.5303 0.6321 17 1 10.0817 -0.2823 -0.1858 18 6 10.2042 -0.6752 1.9288 19 6 8.7028 -1.8282 0.3270 20 1 7.6255 -1.8555 0.2555 21 6 9.4355 -2.9812 0.1402 22 7 10.7473 -2.9481 0.2277 23 14 8.5649 -4.5902 -0.2373 24 1 8.4187 -4.7408 -1.7074 25 1 9.3622 -5.7222 0.2994 26 1 7.2217 -4.5867 0.3960 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8574 0.6435 -0.8891 33 1 3.8568 0.6438 0.8908 34 1 6.4525 2.8894 0.7353 35 1 5.1897 2.6923 -2.5394 36 1 6.2408 1.4735 -4.4015 37 1 8.1256 -0.0481 -3.9759 38 1 8.9790 -0.3502 -1.6876 39 1 10.6075 0.2954 2.2175 40 1 9.5510 -1.0467 2.7184 41 1 11.0232 -1.3776 1.7743 42 1 11.2627 -3.7593 0.0966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154442735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:33 Heat of formation + Delta-G solvation = -92.468400 kcal Electronic energy + Delta-G solvation = -26141.253244 eV Core-core repulsion = 22339.946094 eV Total energy + Delta-G solvation = -3801.307150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.09448 -38.24466 -37.27448 -36.19093 -34.96385 -34.12327 -32.20127 -30.78283 -30.28462 -28.74920 -26.84156 -25.43383 -23.76129 -22.62421 -22.52252 -21.13682 -19.46819 -17.95260 -17.84800 -16.95153 -16.67851 -16.54580 -16.40710 -16.01953 -15.41215 -15.29129 -15.12046 -14.53175 -14.37333 -13.88336 -13.62385 -13.46550 -13.23255 -12.95190 -12.53179 -12.43562 -12.31069 -12.10126 -12.02153 -11.86441 -11.72251 -11.63769 -11.23746 -11.15507 -11.05581 -10.88483 -10.61242 -10.56365 -10.43578 -10.09120 -10.05919 -9.50230 -9.14891 -9.06916 -8.57058 -8.16794 -6.67543 -6.20930 -4.35175 -0.03207 1.61784 1.70898 2.33794 2.59588 3.18114 3.25767 3.25836 3.29405 3.53877 3.74166 4.00470 4.08630 4.26504 4.32764 4.51685 4.80173 5.00091 5.02893 5.05088 5.06000 5.23560 5.37350 5.37686 5.39327 5.54629 5.75358 5.89704 6.10454 6.32582 6.49637 6.58319 6.64135 6.69691 6.74787 6.80992 6.91724 6.96398 7.22590 7.33797 7.51292 7.71766 7.92642 8.66163 9.30562 10.79010 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.003942 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.910418 B = 7101.850860 C = 7921.569367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.077 3.923 4 C -0.634 4.634 5 S 2.619 3.381 6 O -0.946 6.946 7 O -0.951 6.951 8 N -1.041 6.041 9 C 0.143 3.857 10 C -0.166 4.166 11 C -0.113 4.113 12 C -0.118 4.118 13 C -0.092 4.092 14 C -0.067 4.067 15 S -0.184 6.184 16 C 0.094 3.906 17 H 0.052 0.948 18 C -0.124 4.124 19 C -0.521 4.521 20 H 0.067 0.933 21 C 0.072 3.928 22 N -0.886 5.886 23 Si 0.897 3.103 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.428 0.572 35 H 0.157 0.843 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.151 0.849 39 H 0.021 0.979 40 H 0.040 0.960 41 H 0.097 0.903 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.188 7.905 -3.352 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C -0.001 4.001 4 C -0.762 4.762 5 S 2.711 3.289 6 O -0.936 6.936 7 O -0.941 6.941 8 N -0.792 5.792 9 C 0.041 3.959 10 C -0.188 4.188 11 C -0.135 4.135 12 C -0.139 4.139 13 C -0.116 4.116 14 C -0.185 4.185 15 S 0.063 5.937 16 C -0.033 4.033 17 H 0.070 0.930 18 C -0.184 4.184 19 C -0.560 4.560 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.524 5.524 23 Si 0.724 3.276 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.196 1.196 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.267 0.733 35 H 0.174 0.826 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.168 0.832 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.708 8.987 -2.268 16.548 hybrid contribution 0.196 -2.144 -0.978 2.364 sum -13.512 6.843 -3.247 15.490 Atomic orbital electron populations 1.22845 0.80576 1.03318 1.00326 1.87988 1.19985 1.26234 1.95429 1.22022 0.89720 0.86841 1.01523 1.30746 1.05129 1.26251 1.14078 1.04888 0.73089 0.76475 0.74437 1.93541 1.84121 1.71096 1.44876 1.93616 1.83672 1.72019 1.44830 1.53152 1.26205 1.68822 1.31043 1.16933 0.96797 0.95578 0.86605 1.21723 1.03897 1.02848 0.90376 1.20903 0.96798 0.97449 0.98330 1.21141 0.97139 0.98854 0.96758 1.21569 1.00511 0.98212 0.91315 1.21632 0.99383 0.98884 0.98570 1.84691 1.51901 1.50116 1.06951 1.21150 0.91678 0.91864 0.98618 0.92989 1.21641 1.01180 0.99438 0.96165 1.21236 0.93587 0.91600 1.49563 0.91446 1.24945 0.94846 0.98942 0.94542 1.69863 1.04953 1.28902 1.48644 0.86495 0.79790 0.82603 0.78732 1.20390 1.21027 1.19627 0.93672 0.89124 0.93664 0.91734 0.91665 0.83564 0.83388 0.73337 0.82557 0.85910 0.86016 0.83179 0.96035 0.94050 0.88419 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.55 10.70 -35.23 -0.38 -4.93 16 3 C 0.08 0.83 5.95 37.16 0.22 1.05 16 4 C -0.63 -7.42 6.29 37.16 0.23 -7.19 16 5 S 2.62 33.88 5.24 -107.50 -0.56 33.32 16 6 O -0.95 -13.51 15.00 -57.54 -0.86 -14.37 16 7 O -0.95 -14.23 18.08 -57.54 -1.04 -15.27 16 8 N -1.04 -14.96 5.37 32.54 0.17 -14.79 16 9 C 0.14 2.33 6.16 -83.50 -0.51 1.81 16 10 C -0.17 -2.48 9.25 -39.41 -0.36 -2.85 16 11 C -0.11 -1.60 10.04 -39.55 -0.40 -1.99 16 12 C -0.12 -1.84 10.04 -39.57 -0.40 -2.24 16 13 C -0.09 -1.71 8.85 -39.40 -0.35 -2.06 16 14 C -0.07 -1.25 6.06 -38.92 -0.24 -1.49 16 15 S -0.18 -3.65 20.13 -107.50 -2.16 -5.82 16 16 C 0.09 2.16 2.00 -27.89 -0.06 2.10 16 17 H 0.05 1.26 6.86 -51.92 -0.36 0.91 16 18 C -0.12 -2.77 8.87 37.16 0.33 -2.45 16 19 C -0.52 -12.96 7.12 -34.44 -0.25 -13.20 16 20 H 0.07 1.73 7.71 -52.48 -0.40 1.33 16 21 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 22 N -0.89 -23.04 11.40 55.43 0.63 -22.41 16 23 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.15 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.15 1.71 8.14 -51.92 -0.42 1.28 16 34 H 0.43 5.92 8.10 -34.46 -0.28 5.64 16 35 H 0.16 2.20 5.15 -52.49 -0.27 1.93 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.15 3.13 5.13 -52.49 -0.27 2.86 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.04 0.92 8.13 -51.93 -0.42 0.49 16 41 H 0.10 2.35 6.30 -51.93 -0.33 2.02 16 42 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -29.99 370.67 -10.08 -40.08 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.69 Total: 9.00 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -0.76 Total: -25.46 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.81 Total: -37.19 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -2.28 Total: -34.57 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 30.22 SS G_CDS: -2.73 Total: 27.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.99 -10.08 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154442735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.392 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds