Wall clock time and date at job start Wed Apr 1 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00472 * 2 1 4 4 C 1.52997 * 109.47545 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47337 * 180.02562 * 4 3 2 6 6 O 1.42099 * 110.54433 * 291.62866 * 5 4 3 7 7 O 1.42105 * 110.54067 * 68.37408 * 5 4 3 8 8 N 1.65597 * 104.45134 * 180.02562 * 5 4 3 9 9 C 1.40001 * 120.00046 * 60.86789 * 8 5 4 10 10 C 1.38651 * 120.09795 * 35.50646 * 9 8 5 11 11 C 1.38286 * 120.00453 * 179.69706 * 10 9 8 12 12 C 1.38264 * 120.20267 * 0.59998 * 11 10 9 13 13 C 1.38246 * 120.19929 * 359.67755 * 12 11 10 14 14 C 1.38733 * 119.99173 * 0.02562 * 13 12 11 15 15 S 1.76206 * 120.09955 * 179.97438 * 14 13 12 16 16 C 1.81401 * 103.00117 * 354.00440 * 15 14 13 17 17 H 1.09000 * 109.46802 * 50.33175 * 16 15 14 18 18 C 1.53001 * 109.46914 * 170.32855 * 16 15 14 19 19 C 1.50695 * 109.47241 * 290.33338 * 16 15 14 20 20 H 1.08009 * 120.00163 * 359.97438 * 19 16 15 21 21 C 1.37879 * 120.00036 * 180.02562 * 19 16 15 22 22 N 1.31509 * 119.99982 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99938 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46945 * 89.99699 * 23 21 19 25 25 H 1.48493 * 109.47023 * 209.99997 * 23 21 19 26 26 H 1.48506 * 109.47029 * 329.99972 * 23 21 19 27 27 H 1.09002 * 109.46691 * 60.00227 * 1 2 3 28 28 H 1.08994 * 109.46861 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46822 * 300.00207 * 1 2 3 30 30 H 1.09006 * 109.47003 * 59.99516 * 3 2 1 31 31 H 1.09004 * 109.46879 * 300.00429 * 3 2 1 32 32 H 1.09000 * 109.46756 * 60.00064 * 4 3 2 33 33 H 1.09000 * 109.47175 * 300.00029 * 4 3 2 34 34 H 0.97000 * 119.99705 * 240.87133 * 8 5 4 35 35 H 1.08001 * 119.99145 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.89393 * 180.32168 * 11 10 9 37 37 H 1.08001 * 119.90340 * 179.70326 * 12 11 10 38 38 H 1.08002 * 120.00824 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.47215 * 307.18566 * 18 16 15 40 40 H 1.08998 * 109.46891 * 67.18859 * 18 16 15 41 41 H 1.09000 * 109.46896 * 187.18657 * 18 16 15 42 42 H 0.96999 * 119.99845 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2734 2.8417 0.0014 6 8 4.0288 3.4971 -1.2355 7 8 4.0277 3.4964 1.2385 8 7 5.9064 2.5669 0.0013 9 6 6.4988 1.8692 -1.0580 10 6 6.0207 2.0290 -2.3496 11 6 6.6113 1.3437 -3.3954 12 6 7.6710 0.4884 -3.1562 13 6 8.1508 0.3183 -1.8709 14 6 7.5684 1.0065 -0.8165 15 16 8.1773 0.7913 0.8230 16 6 9.4051 -0.5303 0.6321 17 1 10.0817 -0.2823 -0.1858 18 6 10.2042 -0.6752 1.9288 19 6 8.7028 -1.8282 0.3270 20 1 7.6255 -1.8555 0.2555 21 6 9.4355 -2.9812 0.1402 22 7 10.7473 -2.9481 0.2277 23 14 8.5649 -4.5902 -0.2373 24 1 8.4187 -4.7408 -1.7074 25 1 9.3622 -5.7222 0.2994 26 1 7.2217 -4.5867 0.3960 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8574 0.6435 -0.8891 33 1 3.8568 0.6438 0.8908 34 1 6.4525 2.8894 0.7353 35 1 5.1897 2.6923 -2.5394 36 1 6.2408 1.4735 -4.4015 37 1 8.1256 -0.0481 -3.9759 38 1 8.9790 -0.3502 -1.6876 39 1 10.6075 0.2954 2.2175 40 1 9.5510 -1.0467 2.7184 41 1 11.0232 -1.3776 1.7743 42 1 11.2627 -3.7593 0.0966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154442735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:32 Heat of formation + Delta-G solvation = -111.658532 kcal Electronic energy + Delta-G solvation = -26142.085390 eV Core-core repulsion = 22339.946094 eV Total energy + Delta-G solvation = -3802.139297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35411 -39.02443 -38.40250 -37.31252 -36.36259 -35.81137 -33.06571 -32.44235 -31.82034 -29.98677 -27.49974 -27.34570 -24.64470 -24.01124 -23.86191 -22.73223 -20.56729 -19.14073 -18.96711 -18.47292 -17.91544 -17.81583 -17.42986 -17.06034 -16.87689 -16.44045 -16.06884 -15.90134 -15.73421 -15.15576 -14.96536 -14.77076 -14.66567 -14.35812 -13.67780 -13.47918 -13.42562 -13.40152 -13.28305 -13.25165 -12.87635 -12.80570 -12.78328 -12.52800 -12.36385 -12.33837 -12.21618 -12.08660 -11.91144 -11.48908 -11.29313 -10.86543 -10.79235 -10.61549 -10.40044 -9.43107 -8.32944 -8.00603 -6.33311 -1.08437 0.33944 0.41409 0.94087 1.38783 1.40295 1.42370 1.50534 1.87225 2.32385 2.39819 2.76347 2.89170 3.00805 3.10561 3.47724 3.64022 3.87405 4.05670 4.06611 4.23611 4.34395 4.44484 4.53158 4.53684 4.62513 4.65195 4.66408 4.83134 4.84160 4.85513 4.91494 5.09787 5.31525 5.36616 5.49428 5.61368 5.66092 5.75211 5.78058 6.03752 6.04202 6.08382 6.69113 7.33842 8.85103 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.003942 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.910418 B = 7101.850860 C = 7921.569367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.407 6.407 3 C 0.066 3.934 4 C -0.626 4.626 5 S 2.638 3.362 6 O -0.957 6.957 7 O -0.970 6.970 8 N -1.045 6.045 9 C 0.150 3.850 10 C -0.167 4.167 11 C -0.095 4.095 12 C -0.120 4.120 13 C -0.111 4.111 14 C -0.095 4.095 15 S -0.177 6.177 16 C 0.090 3.910 17 H 0.031 0.969 18 C -0.115 4.115 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.032 3.968 22 N -0.909 5.909 23 Si 0.948 3.052 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.274 1.274 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.429 0.571 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.377 8.401 -4.716 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.326 6.326 3 C -0.012 4.012 4 C -0.757 4.757 5 S 2.733 3.267 6 O -0.947 6.947 7 O -0.961 6.961 8 N -0.795 5.795 9 C 0.047 3.953 10 C -0.189 4.189 11 C -0.116 4.116 12 C -0.141 4.141 13 C -0.135 4.135 14 C -0.212 4.212 15 S 0.069 5.931 16 C -0.038 4.038 17 H 0.048 0.952 18 C -0.175 4.175 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.170 4.170 22 N -0.547 5.547 23 Si 0.774 3.226 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.199 1.199 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.267 0.733 35 H 0.189 0.811 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.138 0.862 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.899 9.509 -3.647 18.881 hybrid contribution 0.762 -2.225 -0.632 2.436 sum -15.137 7.284 -4.279 17.334 Atomic orbital electron populations 1.23091 0.78764 1.04429 1.01694 1.87933 1.22084 1.26882 1.95706 1.22234 0.88717 0.86978 1.03289 1.30638 1.06302 1.24485 1.14231 1.04285 0.72282 0.76560 0.73607 1.93511 1.84052 1.71949 1.45147 1.93592 1.83743 1.73023 1.45710 1.53238 1.26907 1.68570 1.30812 1.17007 0.95912 0.94736 0.87634 1.22005 1.04125 1.02942 0.89871 1.21348 0.95119 0.95212 0.99969 1.21382 0.97523 0.99245 0.95948 1.21428 1.00474 0.98653 0.92991 1.21661 1.01108 1.00904 0.97492 1.84394 1.51274 1.48660 1.08736 1.20923 0.92327 0.92539 0.97968 0.95151 1.21495 1.00374 0.99873 0.95777 1.21310 0.92985 0.92645 1.49219 0.92638 1.25551 0.95368 1.01426 0.94611 1.69960 1.05844 1.29445 1.49473 0.85690 0.78640 0.79629 0.78628 1.19864 1.20747 1.19866 0.92186 0.88268 0.92431 0.90320 0.89716 0.83366 0.83427 0.73278 0.81141 0.81899 0.83900 0.86235 0.94186 0.94539 0.90464 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.47 16 2 O -0.41 -9.03 10.70 -148.98 -1.59 -10.63 16 3 C 0.07 1.27 5.95 71.98 0.43 1.70 16 4 C -0.63 -13.62 6.29 71.98 0.45 -13.16 16 5 S 2.64 63.99 5.24 -56.49 -0.30 63.69 16 6 O -0.96 -25.06 15.00 -127.65 -1.92 -26.97 16 7 O -0.97 -27.81 18.08 -127.65 -2.31 -30.12 16 8 N -1.05 -28.98 5.37 -50.95 -0.27 -29.25 16 9 C 0.15 4.67 6.16 38.24 0.24 4.91 16 10 C -0.17 -4.55 9.25 22.38 0.21 -4.34 16 11 C -0.10 -2.37 10.04 22.29 0.22 -2.15 16 12 C -0.12 -3.54 10.04 22.28 0.22 -3.32 16 13 C -0.11 -4.17 8.85 22.39 0.20 -3.97 16 14 C -0.09 -3.52 6.06 22.70 0.14 -3.38 16 15 S -0.18 -7.14 20.13 -56.49 -1.14 -8.28 16 16 C 0.09 4.27 2.00 29.85 0.06 4.33 16 17 H 0.03 1.56 6.86 -2.39 -0.02 1.54 16 18 C -0.12 -5.29 8.87 71.98 0.64 -4.65 16 19 C -0.52 -26.64 7.12 25.60 0.18 -26.46 16 20 H 0.06 2.91 7.71 -2.91 -0.02 2.89 16 21 C 0.03 1.66 5.30 84.66 0.45 2.11 16 22 N -0.91 -48.34 11.40 21.45 0.24 -48.10 16 23 Si 0.95 41.45 29.54 68.60 2.03 43.47 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.43 11.66 8.10 -96.75 -0.78 10.87 16 35 H 0.17 4.23 5.15 -2.91 -0.01 4.21 16 36 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 38 H 0.12 5.21 5.13 -2.91 -0.01 5.20 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 41 H 0.08 3.84 6.30 -2.39 -0.02 3.83 16 42 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -64.30 370.67 -0.31 -64.61 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.26 Total: 28.47 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 4.68 Total: -46.90 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -0.03 Total: -77.35 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -5.82 Total: -67.71 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 56.85 SS G_CDS: -1.43 Total: 55.42 kcal Total: -64.30 -0.31 -64.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154442735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.053 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds