Wall clock time and date at job start Wed Apr 1 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 114.00292 * 2 1 4 4 C 1.52999 * 109.47352 * 180.02562 * 3 2 1 5 5 S 1.81394 * 109.47162 * 179.97438 * 4 3 2 6 6 O 1.42102 * 110.54305 * 291.62458 * 5 4 3 7 7 O 1.42100 * 110.54505 * 68.37333 * 5 4 3 8 8 N 1.65599 * 104.45026 * 179.97438 * 5 4 3 9 9 C 1.40010 * 120.00093 * 60.05705 * 8 5 4 10 10 C 1.38643 * 120.09536 * 35.53321 * 9 8 5 11 11 C 1.38294 * 120.00056 * 179.97438 * 10 9 8 12 12 C 1.38265 * 120.20078 * 0.03689 * 11 10 9 13 13 C 1.38242 * 120.20242 * 0.02562 * 12 11 10 14 14 C 1.38726 * 119.99373 * 359.66862 * 13 12 11 15 15 S 1.76197 * 120.10560 * 180.32443 * 14 13 12 16 16 C 1.81403 * 102.99877 * 353.81551 * 15 14 13 17 17 H 1.08997 * 109.47274 * 49.99173 * 16 15 14 18 18 C 1.52993 * 109.46922 * 289.98624 * 16 15 14 19 19 C 1.50700 * 109.47078 * 169.98613 * 16 15 14 20 20 H 1.08000 * 119.99980 * 0.02562 * 19 16 15 21 21 C 1.37878 * 119.99920 * 179.97438 * 19 16 15 22 22 N 1.31516 * 120.00162 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00023 * 180.02562 * 21 19 16 24 24 H 1.48508 * 109.46924 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47182 * 120.00043 * 23 21 19 26 26 H 1.48499 * 109.47135 * 240.00506 * 23 21 19 27 27 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46786 * 300.00294 * 1 2 3 29 29 H 1.08997 * 109.46823 * 59.99659 * 1 2 3 30 30 H 1.08997 * 109.47253 * 59.99491 * 3 2 1 31 31 H 1.09006 * 109.46987 * 300.00016 * 3 2 1 32 32 H 1.08999 * 109.46938 * 59.99885 * 4 3 2 33 33 H 1.08998 * 109.46994 * 300.00152 * 4 3 2 34 34 H 0.97001 * 119.99915 * 240.06081 * 8 5 4 35 35 H 1.07994 * 120.00285 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89418 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.89809 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.00558 * 179.97438 * 13 12 11 39 39 H 1.09002 * 109.47100 * 182.21915 * 18 16 15 40 40 H 1.08999 * 109.47673 * 302.22008 * 18 16 15 41 41 H 1.08999 * 109.47422 * 62.22529 * 18 16 15 42 42 H 0.96996 * 119.99815 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 16 4.2734 2.8417 -0.0014 6 8 4.0277 3.4964 -1.2385 7 8 4.0288 3.4971 1.2355 8 7 5.9064 2.5669 -0.0013 9 6 6.4963 1.8535 -1.0517 10 6 6.0154 1.9946 -2.3444 11 6 6.5999 1.2894 -3.3805 12 6 7.6636 0.4418 -3.1318 13 6 8.1490 0.2938 -1.8459 14 6 7.5730 1.0021 -0.8014 15 16 8.1949 0.8222 0.8373 16 6 9.4205 -0.5041 0.6654 17 1 10.0868 -0.2774 -0.1669 18 6 8.7038 -1.8292 0.3986 19 6 10.2233 -0.6141 1.9360 20 1 10.0166 0.0475 2.7642 21 6 11.2210 -1.5599 2.0414 22 7 11.4723 -2.3658 1.0329 23 14 12.2157 -1.6966 3.6166 24 1 11.7394 -0.6834 4.5923 25 1 12.0469 -3.0551 4.1922 26 1 13.6510 -1.4604 3.3178 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 3.8568 0.6438 -0.8908 33 1 3.8575 0.6435 0.8891 34 1 6.4543 2.9002 0.7264 35 1 5.1843 2.6552 -2.5422 36 1 6.2241 1.4009 -4.3868 37 1 8.1161 -0.1069 -3.9446 38 1 8.9799 -0.3695 -1.6552 39 1 9.4376 -2.6327 0.3345 40 1 8.0084 -2.0365 1.2120 41 1 8.1549 -1.7628 -0.5407 42 1 12.1744 -3.0309 1.1070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154442840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:36 Heat of formation + Delta-G solvation = -91.700791 kcal Electronic energy + Delta-G solvation = -25869.385389 eV Core-core repulsion = 22068.111524 eV Total energy + Delta-G solvation = -3801.273864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.23480 -38.30301 -37.33120 -36.24055 -35.08115 -34.15820 -32.26979 -31.21569 -30.04519 -28.87702 -26.89620 -25.43715 -23.83003 -22.76098 -22.48452 -21.30214 -19.54273 -18.19977 -17.99948 -17.05359 -16.84305 -16.59913 -16.21840 -16.06872 -15.47207 -15.33242 -15.18786 -14.61277 -14.49020 -13.95387 -13.81730 -13.48639 -13.28452 -12.80815 -12.59398 -12.47206 -12.36210 -12.22455 -12.08434 -11.93372 -11.81261 -11.78199 -11.30715 -11.15194 -11.09697 -11.00202 -10.81218 -10.62502 -10.41951 -10.11749 -10.08866 -9.50377 -9.31306 -9.00853 -8.57815 -8.30494 -6.68760 -6.28728 -4.38142 -0.09504 1.48711 1.52868 2.25327 2.50634 3.17140 3.19904 3.25612 3.30510 3.52903 3.68301 3.87189 3.99221 4.24547 4.26301 4.45415 4.75004 4.92444 4.97880 4.99014 5.03753 5.16887 5.19169 5.24567 5.32812 5.45603 5.59872 5.73827 5.93027 6.18820 6.39725 6.47938 6.59370 6.65695 6.68578 6.70773 6.73407 6.84802 7.16876 7.23656 7.53214 7.70055 7.93863 8.61421 9.26854 10.77188 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003185 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.889799 B = 8789.726539 C = 9322.109329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.077 3.923 4 C -0.634 4.634 5 S 2.619 3.381 6 O -0.946 6.946 7 O -0.949 6.949 8 N -1.042 6.042 9 C 0.146 3.854 10 C -0.160 4.160 11 C -0.114 4.114 12 C -0.113 4.113 13 C -0.113 4.113 14 C -0.081 4.081 15 S -0.162 6.162 16 C 0.096 3.904 17 H 0.052 0.948 18 C -0.144 4.144 19 C -0.512 4.512 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.886 5.886 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.281 1.281 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.430 0.570 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.020 0.980 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 5.251 -6.585 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C -0.001 4.001 4 C -0.762 4.762 5 S 2.711 3.289 6 O -0.936 6.936 7 O -0.939 6.939 8 N -0.793 5.793 9 C 0.044 3.956 10 C -0.183 4.183 11 C -0.136 4.136 12 C -0.134 4.134 13 C -0.137 4.137 14 C -0.198 4.198 15 S 0.087 5.913 16 C -0.031 4.031 17 H 0.070 0.930 18 C -0.204 4.204 19 C -0.551 4.551 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.523 5.523 23 Si 0.733 3.267 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.207 1.207 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.269 0.731 35 H 0.175 0.825 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.210 6.328 -5.553 19.159 hybrid contribution 1.196 -1.308 -0.040 1.773 sum -16.014 5.021 -5.593 17.690 Atomic orbital electron populations 1.22849 0.80507 1.03335 1.00379 1.87974 1.20043 1.26237 1.95446 1.22023 0.89655 0.86855 1.01609 1.30744 1.05215 1.26282 1.13951 1.04903 0.73053 0.76462 0.74491 1.93549 1.84088 1.71042 1.44921 1.93624 1.83603 1.71895 1.44782 1.53204 1.26312 1.67738 1.32034 1.16915 0.96653 0.95261 0.86804 1.21754 1.03828 1.02347 0.90372 1.20905 0.96828 0.97378 0.98500 1.21117 0.96906 0.98948 0.96456 1.21422 1.00573 0.99773 0.91969 1.21981 0.99216 0.98892 0.99714 1.85232 1.49498 1.51517 1.05055 1.21137 0.91218 0.89239 1.01520 0.92982 1.22136 0.99949 1.00636 0.97678 1.20667 1.16851 1.18832 0.98758 0.91383 1.24887 0.96558 0.94786 0.97085 1.69857 1.31495 1.20279 1.30673 0.86291 0.79636 0.78194 0.82534 1.19441 1.20683 1.20687 0.89101 0.93635 0.93646 0.91661 0.91642 0.83656 0.83384 0.73117 0.82499 0.85714 0.85893 0.84231 0.88527 0.94124 0.96071 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -4.17 10.70 -35.23 -0.38 -4.55 16 3 C 0.08 0.76 5.95 37.16 0.22 0.98 16 4 C -0.63 -6.74 6.27 37.16 0.23 -6.51 16 5 S 2.62 32.17 5.23 -107.50 -0.56 31.60 16 6 O -0.95 -12.88 15.06 -57.54 -0.87 -13.75 16 7 O -0.95 -13.84 18.08 -57.54 -1.04 -14.88 16 8 N -1.04 -14.43 5.38 32.55 0.18 -14.26 16 9 C 0.15 2.25 6.14 -83.49 -0.51 1.74 16 10 C -0.16 -2.23 9.25 -39.41 -0.36 -2.59 16 11 C -0.11 -1.46 10.04 -39.55 -0.40 -1.86 16 12 C -0.11 -1.58 10.04 -39.57 -0.40 -1.98 16 13 C -0.11 -1.91 8.07 -39.40 -0.32 -2.22 16 14 C -0.08 -1.42 6.05 -38.92 -0.24 -1.66 16 15 S -0.16 -3.25 20.11 -107.50 -2.16 -5.42 16 16 C 0.10 2.25 1.97 -27.89 -0.06 2.19 16 17 H 0.05 1.30 6.83 -51.93 -0.35 0.94 16 18 C -0.14 -3.23 8.59 37.15 0.32 -2.92 16 19 C -0.51 -13.26 8.58 -34.44 -0.30 -13.56 16 20 H 0.07 1.79 7.71 -52.49 -0.40 1.38 16 21 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 22 N -0.89 -23.40 11.30 55.43 0.63 -22.77 16 23 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.15 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.15 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.43 5.90 8.08 -34.47 -0.28 5.62 16 35 H 0.16 2.05 5.19 -52.49 -0.27 1.78 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.14 2.57 4.90 -52.48 -0.26 2.31 16 39 H 0.10 2.37 6.01 -51.93 -0.31 2.06 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.02 0.41 6.05 -51.93 -0.31 0.10 16 42 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -30.80 368.32 -10.02 -40.82 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.56 Total: 7.78 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -0.78 Total: -25.34 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.80 Total: -37.03 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -2.28 Total: -33.18 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 28.91 SS G_CDS: -2.72 Total: 26.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.80 -10.02 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154442840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.884 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds