Wall clock time and date at job start Wed Apr 1 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 114.00292 * 2 1 4 4 C 1.52999 * 109.47352 * 180.02562 * 3 2 1 5 5 S 1.81394 * 109.47162 * 179.97438 * 4 3 2 6 6 O 1.42102 * 110.54305 * 291.62458 * 5 4 3 7 7 O 1.42100 * 110.54505 * 68.37333 * 5 4 3 8 8 N 1.65599 * 104.45026 * 179.97438 * 5 4 3 9 9 C 1.40010 * 120.00093 * 60.05705 * 8 5 4 10 10 C 1.38643 * 120.09536 * 35.53321 * 9 8 5 11 11 C 1.38294 * 120.00056 * 179.97438 * 10 9 8 12 12 C 1.38265 * 120.20078 * 0.03689 * 11 10 9 13 13 C 1.38242 * 120.20242 * 0.02562 * 12 11 10 14 14 C 1.38726 * 119.99373 * 359.66862 * 13 12 11 15 15 S 1.76197 * 120.10560 * 180.32443 * 14 13 12 16 16 C 1.81403 * 102.99877 * 353.81551 * 15 14 13 17 17 H 1.08997 * 109.47274 * 49.99173 * 16 15 14 18 18 C 1.52993 * 109.46922 * 289.98624 * 16 15 14 19 19 C 1.50700 * 109.47078 * 169.98613 * 16 15 14 20 20 H 1.08000 * 119.99980 * 0.02562 * 19 16 15 21 21 C 1.37878 * 119.99920 * 179.97438 * 19 16 15 22 22 N 1.31516 * 120.00162 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00023 * 180.02562 * 21 19 16 24 24 H 1.48508 * 109.46924 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47182 * 120.00043 * 23 21 19 26 26 H 1.48499 * 109.47135 * 240.00506 * 23 21 19 27 27 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46786 * 300.00294 * 1 2 3 29 29 H 1.08997 * 109.46823 * 59.99659 * 1 2 3 30 30 H 1.08997 * 109.47253 * 59.99491 * 3 2 1 31 31 H 1.09006 * 109.46987 * 300.00016 * 3 2 1 32 32 H 1.08999 * 109.46938 * 59.99885 * 4 3 2 33 33 H 1.08998 * 109.46994 * 300.00152 * 4 3 2 34 34 H 0.97001 * 119.99915 * 240.06081 * 8 5 4 35 35 H 1.07994 * 120.00285 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89418 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.89809 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.00558 * 179.97438 * 13 12 11 39 39 H 1.09002 * 109.47100 * 182.21915 * 18 16 15 40 40 H 1.08999 * 109.47673 * 302.22008 * 18 16 15 41 41 H 1.08999 * 109.47422 * 62.22529 * 18 16 15 42 42 H 0.96996 * 119.99815 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 16 4.2734 2.8417 -0.0014 6 8 4.0277 3.4964 -1.2385 7 8 4.0288 3.4971 1.2355 8 7 5.9064 2.5669 -0.0013 9 6 6.4963 1.8535 -1.0517 10 6 6.0154 1.9946 -2.3444 11 6 6.5999 1.2894 -3.3805 12 6 7.6636 0.4418 -3.1318 13 6 8.1490 0.2938 -1.8459 14 6 7.5730 1.0021 -0.8014 15 16 8.1949 0.8222 0.8373 16 6 9.4205 -0.5041 0.6654 17 1 10.0868 -0.2774 -0.1669 18 6 8.7038 -1.8292 0.3986 19 6 10.2233 -0.6141 1.9360 20 1 10.0166 0.0475 2.7642 21 6 11.2210 -1.5599 2.0414 22 7 11.4723 -2.3658 1.0329 23 14 12.2157 -1.6966 3.6166 24 1 11.7394 -0.6834 4.5923 25 1 12.0469 -3.0551 4.1922 26 1 13.6510 -1.4604 3.3178 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 3.8568 0.6438 -0.8908 33 1 3.8575 0.6435 0.8891 34 1 6.4543 2.9002 0.7264 35 1 5.1843 2.6552 -2.5422 36 1 6.2241 1.4009 -4.3868 37 1 8.1161 -0.1069 -3.9446 38 1 8.9799 -0.3695 -1.6552 39 1 9.4376 -2.6327 0.3345 40 1 8.0084 -2.0365 1.2120 41 1 8.1549 -1.7628 -0.5407 42 1 12.1744 -3.0309 1.1070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154442840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:35 Heat of formation + Delta-G solvation = -111.929957 kcal Electronic energy + Delta-G solvation = -25870.262591 eV Core-core repulsion = 22068.111524 eV Total energy + Delta-G solvation = -3802.151067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.41117 -39.01315 -38.40761 -37.31174 -36.42781 -35.84743 -33.06628 -32.79741 -31.58631 -30.02639 -27.48999 -27.38527 -24.64179 -23.92793 -23.82166 -22.98092 -20.58449 -19.49661 -19.00134 -18.34071 -17.89550 -17.79997 -17.43105 -17.04822 -16.85913 -16.46542 -16.10575 -15.90062 -15.77823 -15.27706 -14.97426 -14.69356 -14.50365 -14.38986 -13.80632 -13.64120 -13.45320 -13.29945 -13.26014 -13.17875 -12.94529 -12.89401 -12.77447 -12.53256 -12.47133 -12.34739 -12.24459 -12.08457 -11.89858 -11.53464 -11.33138 -10.81076 -10.78373 -10.64296 -10.44543 -9.47953 -8.25580 -8.18923 -6.41439 -1.08768 0.29165 0.34542 0.85011 1.38693 1.39496 1.42743 1.54030 1.88640 2.32805 2.37452 2.70457 2.89304 3.00785 3.04595 3.48254 3.64582 3.86059 3.95885 4.07812 4.19492 4.34960 4.45513 4.46833 4.54497 4.57959 4.60426 4.65441 4.79169 4.83130 4.84595 4.87929 5.05187 5.25010 5.33514 5.41301 5.57510 5.59382 5.72245 5.76190 6.02677 6.03651 6.03877 6.61278 7.26329 8.80128 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003185 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.889799 B = 8789.726539 C = 9322.109329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.405 6.405 3 C 0.065 3.935 4 C -0.623 4.623 5 S 2.636 3.364 6 O -0.957 6.957 7 O -0.973 6.973 8 N -1.048 6.048 9 C 0.151 3.849 10 C -0.163 4.163 11 C -0.095 4.095 12 C -0.112 4.112 13 C -0.128 4.128 14 C -0.105 4.105 15 S -0.173 6.173 16 C 0.096 3.904 17 H 0.028 0.972 18 C -0.129 4.129 19 C -0.533 4.533 20 H 0.058 0.942 21 C 0.029 3.971 22 N -0.907 5.907 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.276 1.276 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.429 0.571 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.150 0.850 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.339 5.616 -7.953 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.324 6.324 3 C -0.013 4.013 4 C -0.754 4.754 5 S 2.731 3.269 6 O -0.947 6.947 7 O -0.963 6.963 8 N -0.797 5.797 9 C 0.049 3.951 10 C -0.185 4.185 11 C -0.116 4.116 12 C -0.132 4.132 13 C -0.153 4.153 14 C -0.222 4.222 15 S 0.074 5.926 16 C -0.032 4.032 17 H 0.046 0.954 18 C -0.189 4.189 19 C -0.572 4.572 20 H 0.076 0.924 21 C -0.173 4.173 22 N -0.545 5.545 23 Si 0.790 3.210 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.202 1.202 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.266 0.734 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.168 0.832 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.907 6.719 -6.946 21.233 hybrid contribution 1.583 -1.373 0.246 2.109 sum -17.324 5.346 -6.700 19.328 Atomic orbital electron populations 1.23091 0.78786 1.04466 1.01633 1.87923 1.22027 1.26756 1.95702 1.22226 0.88781 0.87032 1.03241 1.30602 1.06174 1.24155 1.14437 1.04339 0.72250 0.76746 0.73576 1.93518 1.84014 1.72053 1.45128 1.93594 1.83730 1.73148 1.45834 1.53304 1.27006 1.67574 1.31841 1.17019 0.95845 0.94460 0.87801 1.22023 1.04119 1.02583 0.89796 1.21385 0.95161 0.95017 1.00031 1.21407 0.97030 0.99117 0.95681 1.21381 1.00501 0.99953 0.93424 1.21902 1.01005 1.01261 0.98008 1.84981 1.48962 1.50579 1.08038 1.20850 0.91859 0.90941 0.99574 0.95395 1.21937 0.99107 0.99426 0.98380 1.20932 1.17819 1.18953 0.99508 0.92416 1.25621 0.97400 0.94462 0.99818 1.69956 1.31891 1.20595 1.32081 0.85396 0.78280 0.78197 0.79175 1.19445 1.20044 1.20178 0.88152 0.92589 0.92205 0.90513 0.89730 0.82961 0.83272 0.73351 0.81216 0.81655 0.83205 0.86490 0.90845 0.94639 0.94185 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -8.16 10.70 -148.98 -1.59 -9.76 16 3 C 0.07 1.15 5.95 71.98 0.43 1.58 16 4 C -0.62 -12.21 6.27 71.98 0.45 -11.76 16 5 S 2.64 61.32 5.23 -56.49 -0.30 61.03 16 6 O -0.96 -24.08 15.06 -127.65 -1.92 -26.00 16 7 O -0.97 -27.68 18.08 -127.65 -2.31 -29.99 16 8 N -1.05 -28.32 5.38 -50.94 -0.27 -28.60 16 9 C 0.15 4.47 6.14 38.24 0.23 4.70 16 10 C -0.16 -4.06 9.25 22.38 0.21 -3.85 16 11 C -0.09 -2.06 10.04 22.29 0.22 -1.83 16 12 C -0.11 -2.83 10.04 22.28 0.22 -2.61 16 13 C -0.13 -4.29 8.07 22.39 0.18 -4.11 16 14 C -0.10 -3.68 6.05 22.70 0.14 -3.54 16 15 S -0.17 -7.14 20.11 -56.49 -1.14 -8.28 16 16 C 0.10 4.65 1.97 29.85 0.06 4.71 16 17 H 0.03 1.47 6.83 -2.39 -0.02 1.46 16 18 C -0.13 -5.96 8.59 71.98 0.62 -5.34 16 19 C -0.53 -28.54 8.58 25.60 0.22 -28.32 16 20 H 0.06 3.13 7.71 -2.91 -0.02 3.11 16 21 C 0.03 1.53 5.30 84.65 0.45 1.98 16 22 N -0.91 -49.07 11.30 21.45 0.24 -48.83 16 23 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.43 11.82 8.08 -96.75 -0.78 11.04 16 35 H 0.17 3.87 5.19 -2.91 -0.02 3.86 16 36 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.12 4.44 4.90 -2.91 -0.01 4.43 16 39 H 0.07 3.73 6.01 -2.39 -0.01 3.71 16 40 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.64 6.05 -2.39 -0.01 1.62 16 42 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -66.93 368.32 -0.31 -67.24 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.27 Total: 26.09 kcal Atomic # 6 Polarization: -51.63 SS G_CDS: 4.68 Total: -46.95 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -0.03 Total: -77.43 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -5.83 Total: -65.75 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 54.18 SS G_CDS: -1.43 Total: 52.75 kcal Total: -66.93 -0.31 -67.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154442840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.691 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds