Wall clock time and date at job start Wed Apr 1 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 120.00155 * 2 1 4 4 N 1.34782 * 119.99795 * 180.02562 * 2 1 3 5 5 C 1.46491 * 119.99723 * 180.02562 * 4 2 1 6 6 C 1.50704 * 109.47164 * 179.72150 * 5 4 2 7 7 C 1.38427 * 119.85415 * 269.73429 * 6 5 4 8 8 C 1.37903 * 120.14798 * 179.72177 * 7 6 5 9 9 C 1.39678 * 119.85157 * 0.56413 * 8 7 6 10 10 C 1.47954 * 120.14896 * 179.68438 * 9 8 7 11 11 C 1.37313 * 122.59171 * 0.02562 * 10 9 8 12 12 S 1.71016 * 108.93224 * 179.97438 * 11 10 9 13 13 C 1.75961 * 90.64617 * 0.02562 * 12 11 10 14 14 N 1.37418 * 125.19984 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99777 * 359.97438 * 14 13 12 16 16 O 1.21957 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.40441 * 119.99647 * 179.97438 * 15 14 13 18 18 H 1.08000 * 120.00036 * 353.70329 * 17 15 14 19 19 C 1.40053 * 119.99977 * 173.70168 * 17 15 14 20 20 N 1.30688 * 120.00050 * 6.29657 * 19 17 15 21 21 Si 1.86795 * 120.00194 * 186.28863 * 19 17 15 22 22 H 1.48505 * 109.47213 * 94.98688 * 21 19 17 23 23 H 1.48506 * 109.47487 * 214.98995 * 21 19 17 24 24 H 1.48501 * 109.47447 * 334.98883 * 21 19 17 25 25 N 1.30354 * 109.60232 * 359.75683 * 13 12 11 26 26 C 1.39675 * 119.70134 * 359.70491 * 9 8 7 27 27 C 1.37905 * 119.84948 * 0.02562 * 26 9 8 28 28 H 1.08998 * 109.47189 * 270.00133 * 1 2 3 29 29 H 1.09003 * 109.46708 * 29.99676 * 1 2 3 30 30 H 1.08996 * 109.47419 * 149.99819 * 1 2 3 31 31 H 0.97004 * 119.99873 * 359.72504 * 4 2 1 32 32 H 1.08999 * 109.47416 * 299.72403 * 5 4 2 33 33 H 1.08998 * 109.47206 * 59.72809 * 5 4 2 34 34 H 1.07996 * 119.92060 * 359.97302 * 7 6 5 35 35 H 1.08006 * 120.07236 * 180.27071 * 8 7 6 36 36 H 1.07996 * 125.53306 * 359.97438 * 11 10 9 37 37 H 0.97003 * 119.99916 * 179.97438 * 14 13 12 38 38 H 0.96994 * 119.99990 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.07426 * 180.02562 * 26 9 8 40 40 H 1.07998 * 119.92391 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1482 -2.5881 0.0062 7 6 4.3827 -3.2309 1.2095 8 6 4.8369 -4.5329 1.2223 9 6 5.0717 -5.1991 0.0173 10 6 5.5657 -6.5937 0.0233 11 6 5.8117 -7.2863 1.1832 12 16 6.3663 -8.8545 0.7861 13 6 6.2359 -8.4877 -0.9299 14 7 6.5427 -9.3549 -1.9509 15 6 6.9834 -10.5972 -1.6702 16 8 7.1103 -10.9517 -0.5102 17 6 7.2965 -11.4836 -2.7136 18 1 7.0889 -11.2079 -3.7369 19 6 7.8780 -12.7251 -2.4270 20 7 8.0166 -13.1109 -1.1861 21 14 8.4555 -13.8295 -3.8184 22 1 9.9034 -13.6052 -4.0601 23 1 8.2295 -15.2501 -3.4493 24 1 7.6926 -13.5113 -5.0521 25 7 5.7993 -7.2693 -1.0848 26 6 4.8383 -4.5427 -1.1933 27 6 4.3787 -3.2425 -1.1917 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6958 -2.0073 0.0031 32 1 4.0095 -0.6571 -0.8919 33 1 4.0088 -0.6498 0.8880 34 1 4.2056 -2.7128 2.1404 35 1 5.0153 -5.0347 2.1619 36 1 5.6769 -6.9029 2.1838 37 1 6.4422 -9.0728 -2.8735 38 1 8.4190 -13.9708 -0.9876 39 1 5.0174 -5.0523 -2.1285 40 1 4.1983 -2.7337 -2.1270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170527645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:15 Heat of formation + Delta-G solvation = -14.971393 kcal Electronic energy + Delta-G solvation = -25221.333203 eV Core-core repulsion = 21320.235375 eV Total energy + Delta-G solvation = -3901.097828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12574 -39.54254 -38.72722 -37.72079 -35.17564 -33.83665 -32.76675 -31.92785 -31.10338 -30.14212 -28.59868 -27.15129 -26.12336 -23.91366 -22.41084 -21.82175 -20.91937 -20.58785 -19.69497 -17.83896 -17.39539 -17.04591 -16.56597 -16.12094 -15.78996 -15.65547 -15.55679 -14.95841 -14.68992 -14.54682 -14.31517 -13.84369 -13.57929 -13.42135 -13.12343 -13.10527 -12.96710 -12.89775 -12.38089 -12.30654 -12.28334 -11.63434 -11.51248 -11.31168 -11.05579 -10.95451 -10.65182 -10.45419 -10.33018 -10.05854 -9.40751 -9.21361 -9.12349 -9.02791 -8.98563 -8.34510 -8.15336 -7.04600 -6.69469 -5.23528 0.79463 1.39273 1.70196 1.94745 2.33749 2.76243 2.88533 2.94945 2.99678 3.03478 3.35371 3.72332 3.99768 4.05231 4.18664 4.41706 4.57237 4.72501 4.86322 4.88348 4.97607 5.01848 5.14408 5.35782 5.35876 5.39999 5.51072 5.57077 5.68826 5.80897 5.91723 6.07368 6.08880 6.21465 6.45510 6.60992 6.64427 6.92173 6.97008 7.19503 7.41794 7.47875 7.70121 7.90476 8.33018 8.49619 8.87841 9.95990 10.18999 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.001783 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.081369 B =15702.673442 C =16275.037943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.551 6.551 4 N -0.726 5.726 5 C 0.163 3.837 6 C -0.123 4.123 7 C -0.100 4.100 8 C -0.111 4.111 9 C 0.013 3.987 10 C 0.113 3.887 11 C -0.383 4.383 12 S 0.265 5.735 13 C 0.297 3.703 14 N -0.634 5.634 15 C 0.528 3.472 16 O -0.551 6.551 17 C -0.520 4.520 18 H 0.078 0.922 19 C 0.086 3.914 20 N -0.734 5.734 21 Si 0.920 3.080 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.260 1.260 25 N -0.538 5.538 26 C -0.095 4.095 27 C -0.102 4.102 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.404 0.596 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.162 0.838 37 H 0.407 0.593 38 H 0.279 0.721 39 H 0.134 0.866 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 15.530 2.356 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.429 6.429 4 N -0.378 5.378 5 C 0.040 3.960 6 C -0.124 4.124 7 C -0.119 4.119 8 C -0.131 4.131 9 C 0.010 3.990 10 C -0.023 4.023 11 C -0.526 4.526 12 S 0.519 5.481 13 C -0.072 4.072 14 N -0.282 5.282 15 C 0.340 3.660 16 O -0.436 6.436 17 C -0.555 4.555 18 H 0.097 0.903 19 C -0.139 4.139 20 N -0.360 5.360 21 Si 0.744 3.256 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.184 1.184 25 N -0.262 5.262 26 C -0.114 4.114 27 C -0.120 4.120 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.238 0.762 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.180 0.820 37 H 0.243 0.757 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.980 15.007 3.267 17.792 hybrid contribution -0.283 0.090 -1.157 1.194 sum -9.263 15.097 2.110 17.838 Atomic orbital electron populations 1.21887 0.91630 1.04936 1.04811 1.20859 0.90659 0.83420 0.75520 1.90730 1.70870 1.31469 1.49832 1.46248 1.07237 1.08921 1.75424 1.20162 0.79690 0.93180 1.02941 1.19831 1.03456 0.95425 0.93734 1.20878 0.99313 0.94470 0.97216 1.21190 0.99886 0.94476 0.97507 1.18366 0.96735 0.90586 0.93277 1.18537 1.02888 0.93976 0.86876 1.27378 1.17492 1.05028 1.02720 1.85171 1.59189 1.05283 0.98477 1.24445 0.97362 0.90329 0.95063 1.43551 1.64862 1.13161 1.06629 1.17013 0.79221 0.78584 0.91157 1.90630 1.58231 1.73498 1.21237 1.19704 1.41280 1.00465 0.94069 0.90346 1.25801 0.93724 0.97819 0.96578 1.70004 1.27968 1.18683 1.19353 0.86125 0.79721 0.78813 0.80969 1.19286 1.19949 1.18407 1.66660 1.24180 1.04963 1.30416 1.21368 0.97699 0.93958 0.98360 1.20995 0.99100 0.94655 0.97269 0.88841 0.88895 0.90094 0.76188 0.90718 0.90770 0.85956 0.85600 0.82031 0.75692 0.91043 0.84762 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.30 36.01 0.37 -0.50 16 2 C 0.51 4.64 7.94 -10.98 -0.09 4.55 16 3 O -0.55 -7.55 17.10 5.56 0.10 -7.45 16 4 N -0.73 -5.68 5.55 -61.47 -0.34 -6.02 16 5 C 0.16 1.47 5.79 -5.20 -0.03 1.44 16 6 C -0.12 -1.21 5.26 -104.48 -0.55 -1.76 16 7 C -0.10 -1.01 9.68 -39.63 -0.38 -1.39 16 8 C -0.11 -1.34 9.49 -39.17 -0.37 -1.71 16 9 C 0.01 0.19 5.88 -104.84 -0.62 -0.42 16 10 C 0.11 2.01 6.67 -84.21 -0.56 1.45 16 11 C -0.38 -6.53 10.43 30.40 0.32 -6.22 16 12 S 0.27 5.33 20.22 -107.50 -2.17 3.16 16 13 C 0.30 6.30 8.32 -88.28 -0.73 5.57 16 14 N -0.63 -13.83 5.33 -15.00 -0.08 -13.91 16 15 C 0.53 13.50 7.47 -15.43 -0.12 13.38 16 16 O -0.55 -15.47 12.32 4.96 0.06 -15.41 16 17 C -0.52 -12.95 9.23 -38.07 -0.35 -13.30 16 18 H 0.08 1.76 7.86 -52.49 -0.41 1.35 16 19 C 0.09 2.11 5.49 -17.36 -0.10 2.01 16 20 N -0.73 -19.32 11.73 55.55 0.65 -18.67 16 21 Si 0.92 17.76 29.56 -169.99 -5.03 12.73 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 25 N -0.54 -10.59 9.99 -10.29 -0.10 -10.70 16 26 C -0.09 -1.28 9.64 -39.17 -0.38 -1.65 16 27 C -0.10 -1.10 9.68 -39.63 -0.38 -1.48 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.40 2.39 8.46 -40.82 -0.35 2.05 16 32 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.36 6.63 -52.48 -0.35 1.01 16 36 H 0.16 2.25 6.86 -52.49 -0.36 1.89 16 37 H 0.41 7.76 8.77 -40.82 -0.36 7.40 16 38 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 39 H 0.13 1.90 7.68 -52.49 -0.40 1.50 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -32.04 365.64 -9.69 -41.73 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.31 Total: 9.08 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.97 Total: -0.04 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.13 Total: -49.31 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.16 Total: -22.86 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -2.17 Total: 3.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.04 -9.69 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170527645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.762 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds