Wall clock time and date at job start Wed Apr 1 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38237 * 120.00306 * 269.72552 * 4 3 2 6 6 C 1.38237 * 119.99579 * 179.74522 * 5 4 3 7 7 C 1.38230 * 120.00505 * 0.53257 * 6 5 4 8 8 S 1.76198 * 120.00141 * 179.76653 * 7 6 5 9 9 C 1.81396 * 103.00187 * 269.97658 * 8 7 6 10 10 O 1.42097 * 102.99955 * 156.12185 * 8 7 6 11 11 C 1.38239 * 119.99872 * 359.74309 * 7 6 5 12 12 C 1.38240 * 119.99560 * 90.00182 * 4 3 2 13 13 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 14 14 O 1.42097 * 104.27550 * 206.06816 * 13 2 1 15 15 O 1.42103 * 104.27486 * 333.92716 * 13 2 1 16 16 C 1.81404 * 104.45045 * 89.99736 * 13 2 1 17 17 C 1.52997 * 109.46887 * 179.97438 * 16 13 2 18 18 C 1.50702 * 109.46719 * 180.02562 * 17 16 13 19 19 H 1.07995 * 120.00410 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99814 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99777 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00055 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46950 * 89.99901 * 22 20 18 24 24 H 1.48500 * 109.47153 * 209.99996 * 22 20 18 25 25 H 1.48500 * 109.47284 * 330.00546 * 22 20 18 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 1.07991 * 119.99496 * 0.02562 * 5 4 3 32 32 H 1.07999 * 119.99440 * 180.29474 * 6 5 4 33 33 H 1.09002 * 109.47350 * 59.99474 * 9 8 7 34 34 H 1.08996 * 109.47417 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.46943 * 300.00419 * 9 8 7 36 36 H 1.07998 * 120.00018 * 180.02562 * 11 7 6 37 37 H 1.07993 * 120.00261 * 0.02562 * 12 4 3 38 38 H 1.09002 * 109.47042 * 299.99928 * 16 13 2 39 39 H 1.09000 * 109.47032 * 60.00128 * 16 13 2 40 40 H 1.09002 * 109.47335 * 299.99888 * 17 16 13 41 41 H 1.09000 * 109.47067 * 60.00289 * 17 16 13 42 42 H 0.97007 * 120.00035 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3776 2.5944 1.9584 6 6 1.5070 3.0459 3.2585 7 6 2.6058 2.6775 4.0120 8 16 2.7739 3.2580 5.6671 9 6 3.6908 4.8100 5.4642 10 8 3.6185 2.2833 6.2635 11 6 3.5727 1.8533 3.4671 12 6 3.4404 1.3972 2.1688 13 16 2.2930 -1.4342 -0.0006 14 8 3.5395 -1.1194 0.6047 15 8 1.3969 -2.3564 0.6042 16 6 2.5193 -1.8255 -1.7575 17 6 3.2818 -3.1450 -1.8919 18 6 3.4703 -3.4697 -3.3514 19 1 3.0852 -2.8016 -4.1074 20 6 4.1345 -4.6200 -3.7215 21 7 4.2986 -4.9036 -4.9952 22 14 4.8014 -5.7753 -2.4139 23 1 3.7655 -6.7816 -2.0677 24 1 6.0089 -6.4664 -2.9332 25 1 5.1596 -4.9965 -1.2013 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 0.5212 2.8855 1.3684 32 1 0.7515 3.6896 3.6843 33 1 3.1164 5.4920 4.8372 34 1 3.8547 5.2655 6.4407 35 1 4.6518 4.6051 4.9924 36 1 4.4310 1.5652 4.0559 37 1 4.1959 0.7536 1.7430 38 1 1.5450 -1.9178 -2.2375 39 1 3.0866 -1.0279 -2.2372 40 1 4.2561 -3.0522 -1.4119 41 1 2.7149 -3.9428 -1.4121 42 1 4.7662 -5.7126 -5.2556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175103835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:59 Heat of formation + Delta-G solvation = -80.477961 kcal Electronic energy + Delta-G solvation = -25612.637824 eV Core-core repulsion = 21811.850618 eV Total energy + Delta-G solvation = -3800.787206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.54775 -36.82563 -36.37170 -35.97478 -35.56723 -33.98478 -31.85596 -31.51370 -31.11791 -29.16637 -27.59667 -26.04841 -24.90662 -22.91034 -21.83732 -21.19187 -18.68832 -18.38306 -17.67268 -16.96262 -16.94058 -16.28014 -15.94495 -15.50877 -15.30519 -15.11576 -14.72732 -14.43737 -14.29041 -13.98388 -13.71327 -13.59643 -13.53707 -13.02039 -13.00724 -12.81846 -12.79170 -12.36704 -12.12419 -11.94840 -11.90895 -11.75960 -11.63186 -11.40468 -11.28723 -11.23346 -11.10069 -10.51639 -10.47324 -10.19093 -9.79116 -9.48126 -9.34667 -9.09779 -8.96666 -8.69170 -8.66238 -6.19578 -4.21083 0.46280 0.73456 1.23872 1.60528 2.39235 2.84458 3.24699 3.32184 3.36511 3.45823 3.68441 4.14239 4.33348 4.41976 4.46391 4.59275 4.74496 4.79086 4.82620 4.90285 5.10091 5.12196 5.24602 5.34979 5.39379 5.43712 5.47201 5.49008 5.59765 5.67139 5.71159 5.78396 5.94657 6.02969 6.17869 6.23285 6.38672 6.50154 6.77363 6.79898 6.89938 7.51343 8.33174 8.81157 9.40038 10.92693 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.002508 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.350543 B =11161.088137 C =11787.701885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.004 6.004 3 C 0.160 3.840 4 C -0.072 4.072 5 C -0.122 4.122 6 C -0.053 4.053 7 C -0.462 4.462 8 S 1.329 4.671 9 C -0.498 4.498 10 O -0.857 6.857 11 C -0.057 4.057 12 C -0.110 4.110 13 S 2.584 3.416 14 O -0.960 6.960 15 O -0.961 6.961 16 C -0.582 4.582 17 C -0.007 4.007 18 C -0.520 4.520 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.869 3.131 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.262 1.262 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 23.529 16.740 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.839 5.839 3 C 0.034 3.966 4 C -0.074 4.074 5 C -0.142 4.142 6 C -0.073 4.073 7 C -0.559 4.559 8 S 1.526 4.474 9 C -0.655 4.655 10 O -0.853 6.853 11 C -0.076 4.076 12 C -0.130 4.130 13 S 2.682 3.318 14 O -0.950 6.950 15 O -0.951 6.951 16 C -0.715 4.715 17 C -0.046 4.046 18 C -0.559 4.559 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.695 3.305 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.186 1.186 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.266 22.528 18.243 30.752 hybrid contribution 2.239 -0.823 -1.377 2.754 sum -8.026 21.705 16.867 28.636 Atomic orbital electron populations 1.21448 0.78465 1.02960 1.02122 1.57723 1.15133 1.20821 1.90240 1.20242 0.97836 0.85914 0.92579 1.20524 0.94273 0.95546 0.97061 1.21137 0.98768 0.98498 0.95793 1.20756 0.95593 0.97460 0.93445 1.27609 1.01270 1.09085 1.17909 1.69369 1.10504 0.85891 0.81609 1.27769 1.11582 1.18235 1.07907 1.93131 1.69848 1.53985 1.68293 1.21161 0.97646 0.93922 0.94910 1.21633 0.98602 0.98625 0.94164 1.05953 0.73831 0.72749 0.79252 1.93514 1.43961 1.82652 1.74875 1.93551 1.64710 1.61893 1.74948 1.30336 1.10438 1.09655 1.21059 1.19412 0.95042 0.89123 1.01043 1.20836 1.37651 1.08176 0.89246 0.90407 1.24987 0.95228 0.97505 0.95379 1.69878 1.41974 1.26114 1.15293 0.86931 0.79327 0.81651 0.82584 1.19624 1.20699 1.18638 0.92649 0.91129 0.90775 0.88787 0.89148 0.85470 0.84740 0.87135 0.87768 0.89985 0.85610 0.83627 0.85690 0.85661 0.94928 0.95438 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.24 59.85 0.61 1.55 16 2 N -1.00 -12.45 3.10 -123.04 -0.38 -12.83 16 3 C 0.16 1.67 5.44 -5.19 -0.03 1.64 16 4 C -0.07 -0.83 5.46 -104.62 -0.57 -1.40 16 5 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 6 C -0.05 -0.40 9.75 -39.58 -0.39 -0.79 16 7 C -0.46 -4.56 5.61 -39.58 -0.22 -4.78 16 8 S 1.33 9.41 14.19 -107.50 -1.53 7.89 16 9 C -0.50 -2.83 10.70 101.05 1.08 -1.75 16 10 O -0.86 -12.33 16.90 -35.23 -0.60 -12.93 16 11 C -0.06 -0.77 9.44 -39.58 -0.37 -1.14 16 12 C -0.11 -1.53 9.12 -39.58 -0.36 -1.89 16 13 S 2.58 43.93 5.32 -107.50 -0.57 43.36 16 14 O -0.96 -18.16 14.82 -57.54 -0.85 -19.01 16 15 O -0.96 -19.10 17.09 -57.54 -0.98 -20.08 16 16 C -0.58 -10.49 6.12 37.16 0.23 -10.26 16 17 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 18 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 21 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 22 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 28 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 29 H 0.09 0.98 7.55 -51.93 -0.39 0.59 16 30 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 33 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.13 1.81 7.45 -52.49 -0.39 1.42 16 37 H 0.15 2.22 6.48 -52.49 -0.34 1.88 16 38 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 39 H 0.13 2.02 8.14 -51.92 -0.42 1.60 16 40 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 41 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -40.98 375.52 -10.18 -51.16 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.09 Total: -0.55 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: -0.95 Total: -33.37 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.39 Total: -39.05 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -2.43 Total: -52.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 53.34 SS G_CDS: -2.10 Total: 51.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.98 -10.18 -51.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175103835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.318 kcal (2) G-P(sol) polarization free energy of solvation -40.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds