Wall clock time and date at job start Wed Apr 1 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38237 * 120.00306 * 269.72552 * 4 3 2 6 6 C 1.38237 * 119.99579 * 179.74522 * 5 4 3 7 7 C 1.38230 * 120.00505 * 0.53257 * 6 5 4 8 8 S 1.76198 * 120.00141 * 179.76653 * 7 6 5 9 9 C 1.81396 * 103.00187 * 269.97658 * 8 7 6 10 10 O 1.42097 * 102.99955 * 156.12185 * 8 7 6 11 11 C 1.38239 * 119.99872 * 359.74309 * 7 6 5 12 12 C 1.38240 * 119.99560 * 90.00182 * 4 3 2 13 13 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 14 14 O 1.42097 * 104.27550 * 206.06816 * 13 2 1 15 15 O 1.42103 * 104.27486 * 333.92716 * 13 2 1 16 16 C 1.81404 * 104.45045 * 89.99736 * 13 2 1 17 17 C 1.52997 * 109.46887 * 179.97438 * 16 13 2 18 18 C 1.50702 * 109.46719 * 180.02562 * 17 16 13 19 19 H 1.07995 * 120.00410 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99814 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99777 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00055 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46950 * 89.99901 * 22 20 18 24 24 H 1.48500 * 109.47153 * 209.99996 * 22 20 18 25 25 H 1.48500 * 109.47284 * 330.00546 * 22 20 18 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 1.07991 * 119.99496 * 0.02562 * 5 4 3 32 32 H 1.07999 * 119.99440 * 180.29474 * 6 5 4 33 33 H 1.09002 * 109.47350 * 59.99474 * 9 8 7 34 34 H 1.08996 * 109.47417 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.46943 * 300.00419 * 9 8 7 36 36 H 1.07998 * 120.00018 * 180.02562 * 11 7 6 37 37 H 1.07993 * 120.00261 * 0.02562 * 12 4 3 38 38 H 1.09002 * 109.47042 * 299.99928 * 16 13 2 39 39 H 1.09000 * 109.47032 * 60.00128 * 16 13 2 40 40 H 1.09002 * 109.47335 * 299.99888 * 17 16 13 41 41 H 1.09000 * 109.47067 * 60.00289 * 17 16 13 42 42 H 0.97007 * 120.00035 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3776 2.5944 1.9584 6 6 1.5070 3.0459 3.2585 7 6 2.6058 2.6775 4.0120 8 16 2.7739 3.2580 5.6671 9 6 3.6908 4.8100 5.4642 10 8 3.6185 2.2833 6.2635 11 6 3.5727 1.8533 3.4671 12 6 3.4404 1.3972 2.1688 13 16 2.2930 -1.4342 -0.0006 14 8 3.5395 -1.1194 0.6047 15 8 1.3969 -2.3564 0.6042 16 6 2.5193 -1.8255 -1.7575 17 6 3.2818 -3.1450 -1.8919 18 6 3.4703 -3.4697 -3.3514 19 1 3.0852 -2.8016 -4.1074 20 6 4.1345 -4.6200 -3.7215 21 7 4.2986 -4.9036 -4.9952 22 14 4.8014 -5.7753 -2.4139 23 1 3.7655 -6.7816 -2.0677 24 1 6.0089 -6.4664 -2.9332 25 1 5.1596 -4.9965 -1.2013 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 0.5212 2.8855 1.3684 32 1 0.7515 3.6896 3.6843 33 1 3.1164 5.4920 4.8372 34 1 3.8547 5.2655 6.4407 35 1 4.6518 4.6051 4.9924 36 1 4.4310 1.5652 4.0559 37 1 4.1959 0.7536 1.7430 38 1 1.5450 -1.9178 -2.2375 39 1 3.0866 -1.0279 -2.2372 40 1 4.2561 -3.0522 -1.4119 41 1 2.7149 -3.9428 -1.4121 42 1 4.7662 -5.7126 -5.2556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175103835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:58 Heat of formation + Delta-G solvation = -112.812935 kcal Electronic energy + Delta-G solvation = -25614.039973 eV Core-core repulsion = 21811.850618 eV Total energy + Delta-G solvation = -3802.189355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33161 -38.26592 -37.31874 -36.98392 -36.87723 -35.93722 -33.51616 -32.65468 -31.89286 -29.66513 -28.37039 -27.93225 -25.82641 -23.69522 -23.16661 -22.55722 -19.98361 -19.37715 -19.06778 -18.46193 -17.76238 -17.41789 -17.14714 -16.49161 -16.34665 -16.28610 -15.91676 -15.75560 -15.28937 -15.10834 -14.87631 -14.63361 -14.40858 -14.29039 -13.97089 -13.84903 -13.68582 -13.50393 -13.30810 -13.25339 -13.11533 -13.06718 -12.98853 -12.68387 -12.66991 -12.41264 -12.27866 -12.00901 -11.91341 -11.75105 -11.36978 -11.26255 -10.88691 -10.19771 -9.98211 -9.87938 -9.36780 -8.40934 -6.46263 -0.82197 -0.08510 0.44409 0.97639 1.26912 1.29381 1.38966 1.66376 1.82806 2.24791 2.67527 2.78583 2.92761 2.99783 3.13596 3.65058 3.82452 3.86104 3.97140 4.01114 4.13104 4.31278 4.39597 4.48813 4.51351 4.51768 4.62608 4.71507 4.75536 4.89728 4.94308 5.00401 5.03704 5.07552 5.14384 5.16905 5.28703 5.34646 5.42749 5.53498 5.67288 6.03963 6.12548 6.59525 7.18075 8.74433 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.002508 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.350543 B =11161.088137 C =11787.701885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.992 5.992 3 C 0.152 3.848 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.038 4.038 7 C -0.470 4.470 8 S 1.398 4.602 9 C -0.494 4.494 10 O -0.936 6.936 11 C -0.094 4.094 12 C -0.143 4.143 13 S 2.604 3.396 14 O -0.985 6.985 15 O -0.992 6.992 16 C -0.585 4.585 17 C -0.017 4.017 18 C -0.526 4.526 19 H 0.053 0.947 20 C 0.016 3.984 21 N -0.937 5.937 22 Si 0.922 3.078 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.255 1.255 26 H 0.057 0.943 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.172 0.828 32 H 0.197 0.803 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 26.850 17.759 34.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.831 5.831 3 C 0.027 3.973 4 C -0.088 4.088 5 C -0.134 4.134 6 C -0.057 4.057 7 C -0.566 4.566 8 S 1.597 4.403 9 C -0.653 4.653 10 O -0.932 6.932 11 C -0.113 4.113 12 C -0.163 4.163 13 S 2.701 3.299 14 O -0.976 6.976 15 O -0.982 6.982 16 C -0.717 4.717 17 C -0.056 4.056 18 C -0.565 4.565 19 H 0.071 0.929 20 C -0.183 4.183 21 N -0.576 5.576 22 Si 0.744 3.256 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.179 1.179 26 H 0.076 0.924 27 H 0.134 0.866 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.157 0.843 31 H 0.189 0.811 32 H 0.214 0.786 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.377 25.817 19.248 34.870 hybrid contribution 3.135 -1.621 -1.698 3.916 sum -10.242 24.196 17.549 31.597 Atomic orbital electron populations 1.21805 0.76258 1.05054 1.03007 1.57324 1.16305 1.19696 1.89750 1.20577 0.98165 0.85646 0.92867 1.20697 0.94212 0.96544 0.97318 1.21694 0.98663 0.96480 0.96538 1.21514 0.95105 0.96343 0.92721 1.27941 1.01252 1.08310 1.19087 1.68316 1.08889 0.84349 0.78730 1.27740 1.10492 1.17455 1.09565 1.92997 1.72041 1.57603 1.70607 1.21056 0.98486 0.96742 0.95060 1.21515 0.99805 0.99988 0.95021 1.05050 0.73251 0.73473 0.78098 1.93498 1.45774 1.83268 1.75021 1.93503 1.65384 1.64045 1.75253 1.30310 1.10773 1.07235 1.23333 1.19363 0.95824 0.92266 0.98178 1.21158 1.36745 1.07557 0.91051 0.92893 1.25831 0.95809 0.99383 0.97314 1.69993 1.43397 1.27086 1.17165 0.86078 0.79276 0.79934 0.80266 1.18435 1.19719 1.17876 0.92417 0.86561 0.91246 0.89777 0.84312 0.81089 0.78588 0.83442 0.86017 0.92503 0.88988 0.86918 0.84030 0.84083 0.95337 0.95447 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 127.77 1.31 2.62 16 2 N -0.99 -22.33 3.10 -543.20 -1.68 -24.01 16 3 C 0.15 2.78 5.44 85.63 0.47 3.24 16 4 C -0.09 -1.80 5.46 -19.87 -0.11 -1.91 16 5 C -0.11 -1.43 9.70 22.27 0.22 -1.21 16 6 C -0.04 -0.39 9.75 22.27 0.22 -0.17 16 7 C -0.47 -8.56 5.61 22.27 0.12 -8.43 16 8 S 1.40 17.74 14.19 -56.49 -0.80 16.94 16 9 C -0.49 -4.31 10.70 113.37 1.21 -3.10 16 10 O -0.94 -28.14 16.90 -148.98 -2.52 -30.66 16 11 C -0.09 -2.69 9.44 22.27 0.21 -2.48 16 12 C -0.14 -4.19 9.12 22.27 0.20 -3.98 16 13 S 2.60 88.10 5.32 -56.49 -0.30 87.80 16 14 O -0.99 -38.69 14.82 -127.65 -1.89 -40.58 16 15 O -0.99 -39.33 17.09 -127.65 -2.18 -41.51 16 16 C -0.59 -20.92 6.12 71.98 0.44 -20.48 16 17 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 18 C -0.53 -29.91 9.66 25.60 0.25 -29.66 16 19 H 0.05 3.18 7.99 -2.91 -0.02 3.16 16 20 C 0.02 0.91 5.47 84.66 0.46 1.37 16 21 N -0.94 -57.76 13.96 21.45 0.30 -57.47 16 22 Si 0.92 44.78 27.47 68.60 1.88 46.66 16 23 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.25 -11.98 6.54 99.48 0.65 -11.32 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.12 0.81 7.94 -2.38 -0.02 0.79 16 28 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 29 H 0.08 1.70 7.55 -2.39 -0.02 1.68 16 30 H 0.14 1.21 7.91 -2.39 -0.02 1.19 16 31 H 0.17 0.67 8.06 -2.92 -0.02 0.65 16 32 H 0.20 -0.47 8.06 -2.91 -0.02 -0.49 16 33 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 3.09 7.45 -2.91 -0.02 3.07 16 37 H 0.11 3.88 6.48 -2.91 -0.02 3.86 16 38 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 39 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 40 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 41 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 42 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -97.23 375.52 -1.11 -98.35 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.96 Total: 9.37 kcal Atomic # 6 Polarization: -70.03 SS G_CDS: 5.12 Total: -64.90 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.38 Total: -81.48 kcal Atomic # 8 Polarization: -106.15 SS G_CDS: -6.59 Total: -112.74 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Atomic # 16 Polarization: 105.85 SS G_CDS: -1.10 Total: 104.74 kcal Total: -97.23 -1.11 -98.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175103835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.463 kcal (2) G-P(sol) polarization free energy of solvation -97.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds