Wall clock time and date at job start Wed Apr 1 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50700 * 109.47432 * 84.99478 * 3 2 1 5 5 C 1.38234 * 120.00248 * 269.72664 * 4 3 2 6 6 C 1.38238 * 119.99665 * 179.74138 * 5 4 3 7 7 C 1.38231 * 119.99962 * 0.55385 * 6 5 4 8 8 S 1.76204 * 119.99872 * 179.72212 * 7 6 5 9 9 C 1.81396 * 103.00050 * 269.97696 * 8 7 6 10 10 O 1.42100 * 102.99910 * 23.83096 * 8 7 6 11 11 C 1.38237 * 120.00453 * 359.70012 * 7 6 5 12 12 C 1.38236 * 119.99559 * 89.99856 * 4 3 2 13 13 S 1.65599 * 120.00145 * 179.97438 * 2 1 3 14 14 O 1.42101 * 104.27661 * 206.07137 * 13 2 1 15 15 O 1.42105 * 104.27788 * 333.93201 * 13 2 1 16 16 C 1.81398 * 104.44698 * 90.00384 * 13 2 1 17 17 C 1.53005 * 109.47212 * 180.02562 * 16 13 2 18 18 C 1.50693 * 109.47446 * 179.97438 * 17 16 13 19 19 H 1.08002 * 120.00203 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00097 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99788 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99982 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.46996 * 90.00206 * 22 20 18 24 24 H 1.48496 * 109.47311 * 209.99565 * 22 20 18 25 25 H 1.48497 * 109.47083 * 329.99988 * 22 20 18 26 26 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 27 27 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 28 28 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 29 29 H 1.08995 * 109.47319 * 204.99907 * 3 2 1 30 30 H 1.09007 * 109.47165 * 324.99657 * 3 2 1 31 31 H 1.07999 * 119.99882 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.99839 * 180.27372 * 6 5 4 33 33 H 1.09000 * 109.47026 * 60.00296 * 9 8 7 34 34 H 1.09005 * 109.47258 * 179.97438 * 9 8 7 35 35 H 1.08992 * 109.47580 * 300.00350 * 9 8 7 36 36 H 1.07995 * 120.00055 * 179.97438 * 11 7 6 37 37 H 1.08001 * 120.00427 * 0.02562 * 12 4 3 38 38 H 1.09007 * 109.46954 * 299.99742 * 16 13 2 39 39 H 1.08991 * 109.47563 * 59.99787 * 16 13 2 40 40 H 1.09007 * 109.46622 * 299.99543 * 17 16 13 41 41 H 1.08991 * 109.47358 * 59.99260 * 17 16 13 42 42 H 0.97001 * 119.99672 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 1.4154 5 6 1.3773 2.5946 1.9582 6 6 1.5067 3.0462 3.2583 7 6 2.6057 2.6783 4.0117 8 16 2.7742 3.2598 5.6664 9 6 3.6911 4.8116 5.4622 10 8 1.4343 3.5473 6.0422 11 6 3.5724 1.8537 3.4671 12 6 3.4402 1.3975 2.1689 13 16 2.2931 -1.4341 0.0006 14 8 3.5396 -1.1188 0.6057 15 8 1.3970 -2.3559 0.6062 16 6 2.5195 -1.8268 -1.7558 17 6 3.2810 -3.1471 -1.8892 18 6 3.4686 -3.4736 -3.3484 19 1 3.0828 -2.8065 -4.1050 20 6 4.1327 -4.6242 -3.7175 21 7 4.2968 -4.9088 -4.9909 22 14 4.7993 -5.7785 -2.4089 23 1 3.7634 -6.7844 -2.0620 24 1 6.0067 -6.4702 -2.9275 25 1 5.1577 -4.9987 -1.1971 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 3.1857 1.1178 -0.4343 30 1 1.6501 2.0043 -0.5895 31 1 0.5213 2.8862 1.3679 32 1 0.7513 3.6902 3.6840 33 1 3.1165 5.4933 4.8351 34 1 3.8554 5.2678 6.4385 35 1 4.6520 4.6066 4.9903 36 1 4.4312 1.5666 4.0556 37 1 4.1957 0.7538 1.7432 38 1 1.5452 -1.9196 -2.2359 39 1 3.0867 -1.0296 -2.2362 40 1 4.2553 -3.0546 -1.4091 41 1 2.7135 -3.9440 -1.4089 42 1 4.7637 -5.7185 -5.2506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175103851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:02 Heat of formation + Delta-G solvation = -110.425244 kcal Electronic energy + Delta-G solvation = -25588.028362 eV Core-core repulsion = 21785.942545 eV Total energy + Delta-G solvation = -3802.085817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35456 -38.21047 -37.32243 -36.92907 -36.85109 -35.88544 -33.46699 -32.66057 -31.91544 -29.66391 -28.42273 -27.88601 -25.83753 -23.70811 -23.11353 -22.55843 -19.93669 -19.34222 -19.06784 -18.48663 -17.73605 -17.40237 -17.11783 -16.45795 -16.35246 -16.26303 -15.89118 -15.77689 -15.29828 -15.09557 -14.82431 -14.65286 -14.39222 -14.33741 -13.91537 -13.77661 -13.69006 -13.48424 -13.32215 -13.19668 -13.07206 -13.04555 -12.94674 -12.76377 -12.56542 -12.45302 -12.22854 -11.93736 -11.90900 -11.70544 -11.35854 -11.22889 -10.84085 -10.20348 -9.98115 -9.89487 -9.33505 -8.36079 -6.42096 -0.77662 -0.09554 0.42652 0.95599 1.33412 1.34949 1.45085 1.67089 1.82901 2.30325 2.65676 2.81677 2.97897 2.99485 3.17883 3.63928 3.79224 3.88519 4.01575 4.04322 4.07523 4.30141 4.33114 4.48901 4.51359 4.56925 4.60555 4.65700 4.73757 4.88355 4.92307 4.96144 5.07175 5.11250 5.13864 5.17025 5.27501 5.32424 5.47877 5.50091 5.64689 6.00378 6.16995 6.64115 7.22407 8.79426 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.002436 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.118024 B =11490.802078 C =11957.049639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.995 5.995 3 C 0.152 3.848 4 C -0.084 4.084 5 C -0.125 4.125 6 C -0.085 4.085 7 C -0.468 4.468 8 S 1.390 4.610 9 C -0.494 4.494 10 O -0.927 6.927 11 C -0.046 4.046 12 C -0.135 4.135 13 S 2.612 3.388 14 O -0.970 6.970 15 O -0.992 6.992 16 C -0.589 4.589 17 C -0.016 4.016 18 C -0.528 4.528 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.940 5.940 22 Si 0.926 3.074 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.246 1.246 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.179 0.821 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.036 0.964 41 H 0.027 0.973 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 19.350 19.629 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.832 5.832 3 C 0.027 3.973 4 C -0.086 4.086 5 C -0.144 4.144 6 C -0.105 4.105 7 C -0.565 4.565 8 S 1.589 4.411 9 C -0.652 4.652 10 O -0.923 6.923 11 C -0.064 4.064 12 C -0.155 4.155 13 S 2.708 3.292 14 O -0.960 6.960 15 O -0.982 6.982 16 C -0.720 4.720 17 C -0.055 4.055 18 C -0.567 4.567 19 H 0.066 0.934 20 C -0.187 4.187 21 N -0.580 5.580 22 Si 0.748 3.252 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.169 1.169 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.196 0.804 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.391 18.364 21.109 27.982 hybrid contribution -1.161 0.858 -2.285 2.703 sum -1.552 19.222 18.825 26.949 Atomic orbital electron populations 1.21808 0.77261 1.04427 1.03570 1.57329 1.15905 1.20098 1.89889 1.20512 0.98499 0.85501 0.92765 1.20647 0.94617 0.95828 0.97555 1.21292 0.99273 0.98310 0.95546 1.21150 0.96805 0.98101 0.94407 1.27916 1.00756 1.09191 1.18610 1.68721 0.92953 0.96425 0.83026 1.27725 1.11928 1.16746 1.08777 1.92975 1.37797 1.84978 1.76534 1.21349 0.97814 0.92711 0.94563 1.21844 0.98699 0.99374 0.95580 1.04865 0.73347 0.73091 0.77856 1.93483 1.44888 1.83045 1.74630 1.93501 1.65556 1.63909 1.75250 1.30344 1.10543 1.07433 1.23687 1.19361 0.96098 0.92068 0.97969 1.21177 1.36694 1.07542 0.91238 0.93375 1.25904 0.95822 0.99476 0.97479 1.70013 1.43507 1.27029 1.17461 0.86010 0.79054 0.79742 0.80356 1.18777 1.19896 1.16893 0.90304 0.91243 0.89055 0.88083 0.86231 0.84233 0.87048 0.91837 0.86003 0.84206 0.80394 0.84032 0.84715 0.84045 0.94550 0.95431 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 10.66 127.77 1.36 2.76 16 2 N -0.99 -22.67 3.10 -543.21 -1.68 -24.36 16 3 C 0.15 2.83 5.39 85.63 0.46 3.29 16 4 C -0.08 -1.78 5.46 -19.87 -0.11 -1.89 16 5 C -0.12 -2.52 9.42 22.27 0.21 -2.31 16 6 C -0.09 -1.90 9.44 22.27 0.21 -1.69 16 7 C -0.47 -8.45 5.61 22.27 0.12 -8.33 16 8 S 1.39 17.33 14.19 -56.49 -0.80 16.53 16 9 C -0.49 -4.25 10.70 113.37 1.21 -3.03 16 10 O -0.93 -25.01 16.90 -148.98 -2.52 -27.53 16 11 C -0.05 -0.74 9.75 22.27 0.22 -0.52 16 12 C -0.14 -2.91 9.12 22.27 0.20 -2.71 16 13 S 2.61 81.65 5.37 -56.49 -0.30 81.35 16 14 O -0.97 -32.45 14.82 -127.65 -1.89 -34.34 16 15 O -0.99 -37.30 16.57 -127.65 -2.12 -39.41 16 16 C -0.59 -20.20 6.12 71.98 0.44 -19.76 16 17 C -0.02 -0.73 4.05 29.85 0.12 -0.60 16 18 C -0.53 -29.34 9.66 25.60 0.25 -29.10 16 19 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 20 C 0.01 0.67 5.47 84.65 0.46 1.13 16 21 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 22 Si 0.93 43.05 27.47 68.60 1.88 44.94 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.55 6.91 -2.38 -0.02 1.54 16 28 H 0.09 1.35 7.59 -2.39 -0.02 1.33 16 29 H 0.10 1.78 7.55 -2.39 -0.02 1.77 16 30 H 0.12 1.48 8.05 -2.38 -0.02 1.46 16 31 H 0.14 2.18 7.86 -2.91 -0.02 2.16 16 32 H 0.11 2.69 7.45 -2.91 -0.02 2.67 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.14 3.27 6.48 -2.91 -0.02 3.25 16 38 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 39 H 0.14 4.29 8.14 -2.40 -0.02 4.27 16 40 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 41 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -87.07 373.86 -1.00 -88.08 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.96 Total: 14.48 kcal Atomic # 6 Polarization: -67.93 SS G_CDS: 5.17 Total: -62.77 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.38 Total: -81.32 kcal Atomic # 8 Polarization: -94.75 SS G_CDS: -6.52 Total: -101.28 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 98.98 SS G_CDS: -1.10 Total: 97.88 kcal Total: -87.07 -1.00 -88.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175103851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.350 kcal (2) G-P(sol) polarization free energy of solvation -87.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds