Wall clock time and date at job start Wed Apr 1 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99966 * 2 1 4 4 S 1.65599 * 120.00142 * 180.02562 * 2 1 3 5 5 O 1.42107 * 106.40481 * 336.46217 * 4 2 1 6 6 O 1.42103 * 106.40338 * 203.53983 * 4 2 1 7 7 C 1.76203 * 107.22020 * 90.00033 * 4 2 1 8 8 C 1.38235 * 120.00231 * 89.99610 * 7 4 2 9 9 C 1.38234 * 120.00220 * 179.97438 * 8 7 4 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.50693 * 120.00207 * 179.72405 * 10 9 8 12 12 S 1.81401 * 109.47312 * 89.99480 * 11 10 9 13 13 O 1.42103 * 109.46977 * 63.61397 * 12 11 10 14 14 C 1.81395 * 103.00006 * 180.02562 * 12 11 10 15 15 C 1.53007 * 109.47298 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47299 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00115 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99714 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99824 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00333 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47092 * 89.99871 * 20 18 16 22 22 H 1.48504 * 109.47122 * 209.99832 * 20 18 16 23 23 H 1.48505 * 109.46880 * 329.99747 * 20 18 16 24 24 C 1.38238 * 119.99742 * 359.52139 * 10 9 8 25 25 C 1.38234 * 120.00095 * 0.43554 * 24 10 9 26 26 H 1.09001 * 109.47301 * 269.99600 * 1 2 3 27 27 H 1.08999 * 109.47472 * 30.00197 * 1 2 3 28 28 H 1.09004 * 109.47233 * 150.00167 * 1 2 3 29 29 H 1.08997 * 109.47282 * 270.00396 * 3 2 1 30 30 H 1.08997 * 109.46856 * 30.00184 * 3 2 1 31 31 H 1.08995 * 109.46950 * 149.99815 * 3 2 1 32 32 H 1.07999 * 119.99770 * 0.02562 * 8 7 4 33 33 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47097 * 209.99342 * 11 10 9 35 35 H 1.09001 * 109.47081 * 329.99847 * 11 10 9 36 36 H 1.09000 * 109.47424 * 299.99435 * 14 12 11 37 37 H 1.09004 * 109.47564 * 60.00160 * 14 12 11 38 38 H 1.09005 * 109.46803 * 300.00244 * 15 14 12 39 39 H 1.08996 * 109.46994 * 59.99585 * 15 14 12 40 40 H 0.97005 * 120.00090 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.00354 * 180.21032 * 24 10 9 42 42 H 1.08001 * 120.00324 * 179.78922 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4113 -2.4068 0.5433 6 8 3.5760 -1.1570 0.5439 7 6 2.5538 -1.8851 -1.6839 8 6 3.6928 -1.4634 -2.3440 9 6 3.8977 -1.8176 -3.6643 10 6 2.9608 -2.5886 -4.3265 11 6 3.1811 -2.9696 -5.7677 12 16 4.0840 -4.5410 -5.8466 13 8 3.2915 -5.5719 -5.2733 14 6 4.2508 -4.8267 -7.6301 15 6 5.0034 -6.1373 -7.8685 16 6 5.1415 -6.3750 -9.3502 17 1 4.7336 -5.6623 -10.0518 18 6 5.7894 -7.5018 -9.8102 19 7 5.9103 -7.7089 -11.1033 20 14 6.4954 -8.7341 -8.5969 21 1 5.4685 -9.7580 -8.2771 22 1 7.6829 -9.3944 -9.1963 23 1 6.8963 -8.0296 -7.3526 24 6 1.8236 -3.0137 -3.6652 25 6 1.6192 -2.6602 -2.3446 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3791 1.5834 -1.0276 30 1 1.6084 2.0283 0.5139 31 1 3.1498 1.1384 0.5138 32 1 4.4231 -0.8578 -1.8278 33 1 4.7879 -1.4884 -4.1798 34 1 2.2178 -3.0787 -6.2660 35 1 3.7612 -2.1920 -6.2645 36 1 3.2610 -4.8892 -8.0822 37 1 4.8044 -4.0024 -8.0800 38 1 5.9933 -6.0753 -7.4163 39 1 4.4495 -6.9613 -7.4188 40 1 6.3658 -8.5018 -11.4270 41 1 1.0931 -3.6190 -4.1815 42 1 0.7291 -2.9894 -1.8290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190842585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:33 Heat of formation + Delta-G solvation = -83.482420 kcal Electronic energy + Delta-G solvation = -24900.932716 eV Core-core repulsion = 21100.015227 eV Total energy + Delta-G solvation = -3800.917489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.60846 -37.61409 -36.60617 -36.14916 -35.42082 -33.78023 -33.32035 -31.34868 -31.31770 -28.58939 -27.76755 -25.65968 -25.12096 -23.17434 -22.36502 -20.82066 -19.45515 -18.36669 -17.75815 -17.42538 -16.88342 -16.63773 -15.94470 -15.74497 -15.19264 -15.18104 -14.72900 -14.60914 -14.40683 -14.19214 -13.87278 -13.82772 -13.61373 -13.17437 -13.06981 -12.98562 -12.78839 -12.69470 -12.44247 -12.37587 -12.08546 -11.97056 -11.94358 -11.68070 -11.42131 -11.16458 -11.09092 -10.80035 -10.32585 -10.06831 -9.91846 -9.59188 -9.43037 -9.32707 -9.00094 -8.63603 -7.92851 -6.13953 -4.14015 -0.01678 0.44507 1.02868 1.74111 2.54657 2.86968 3.24596 3.27251 3.34613 3.37132 3.44810 3.92226 3.96066 4.29702 4.37500 4.39541 4.44649 4.59093 4.79446 4.87414 4.95309 5.02887 5.10636 5.19092 5.21839 5.28791 5.30399 5.33335 5.44067 5.56241 5.66046 5.72582 5.75995 5.85231 5.88090 6.01520 6.17349 6.49978 6.54413 6.97993 7.10269 7.62374 8.41249 8.88372 9.46789 10.98830 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.002048 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.376955 B =13671.375887 C =13867.154462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.007 6.007 3 C 0.082 3.918 4 S 2.695 3.305 5 O -0.954 6.954 6 O -0.955 6.955 7 C -0.687 4.687 8 C -0.017 4.017 9 C -0.139 4.139 10 C 0.004 3.996 11 C -0.430 4.430 12 S 1.222 4.778 13 O -0.840 6.840 14 C -0.408 4.408 15 C 0.003 3.997 16 C -0.520 4.520 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.876 3.124 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.262 1.262 24 C -0.134 4.134 25 C -0.016 4.016 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.028 0.972 39 H 0.018 0.982 40 H 0.265 0.735 41 H 0.131 0.869 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 22.491 21.811 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.846 5.846 3 C -0.063 4.063 4 S 2.786 3.214 5 O -0.944 6.944 6 O -0.945 6.945 7 C -0.775 4.775 8 C -0.036 4.036 9 C -0.159 4.159 10 C 0.002 3.998 11 C -0.562 4.562 12 S 1.422 4.578 13 O -0.835 6.835 14 C -0.548 4.548 15 C -0.036 4.036 16 C -0.559 4.559 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.703 3.297 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.154 4.154 25 C -0.035 4.035 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.118 0.882 35 H 0.149 0.851 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.501 21.385 23.171 32.195 hybrid contribution -1.806 -0.802 -1.652 2.576 sum -8.307 20.584 21.519 30.915 Atomic orbital electron populations 1.21520 0.77925 1.03353 1.02506 1.57340 1.15417 1.21770 1.90085 1.21641 0.97430 0.84949 1.02316 1.01938 0.73147 0.72303 0.74051 1.93589 1.66085 1.58276 1.76497 1.93568 1.39995 1.84378 1.76561 1.30853 1.04946 1.15229 1.26478 1.20881 0.93955 0.94665 0.94129 1.21241 1.00017 0.99777 0.94869 1.19559 0.93451 0.93034 0.93714 1.27016 1.12390 1.20258 0.96533 1.70724 1.11179 0.85099 0.90753 1.93117 1.70825 1.49769 1.69826 1.27451 1.06229 1.06830 1.14278 1.19258 0.94889 0.90216 0.99205 1.20996 1.37205 1.08125 0.89575 0.90837 1.25020 0.95497 0.97722 0.95137 1.69898 1.43102 1.28012 1.12762 0.86832 0.79120 0.81881 0.81890 1.20138 1.21009 1.18672 1.21250 0.98312 1.00796 0.95055 1.20846 0.96834 0.91849 0.93974 0.92036 0.90750 0.90918 0.92488 0.90430 0.89669 0.84021 0.83941 0.88232 0.85070 0.90191 0.86866 0.95362 0.96374 0.92523 0.85122 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.29 59.85 0.62 1.09 16 2 N -1.01 -6.84 3.58 -129.21 -0.46 -7.30 16 3 C 0.08 0.38 10.66 59.85 0.64 1.02 16 4 S 2.69 26.81 5.65 -107.50 -0.61 26.21 16 5 O -0.95 -12.04 16.36 -57.17 -0.94 -12.97 16 6 O -0.95 -11.32 15.89 -57.17 -0.91 -12.23 16 7 C -0.69 -7.07 5.97 -39.58 -0.24 -7.31 16 8 C -0.02 -0.16 9.52 -39.58 -0.38 -0.53 16 9 C -0.14 -1.28 9.70 -39.58 -0.38 -1.66 16 10 C 0.00 0.04 5.14 -104.63 -0.54 -0.49 16 11 C -0.43 -4.58 6.05 36.00 0.22 -4.37 16 12 S 1.22 17.39 13.14 -107.50 -1.41 15.98 16 13 O -0.84 -17.20 18.14 -35.23 -0.64 -17.84 16 14 C -0.41 -7.21 5.86 37.16 0.22 -6.99 16 15 C 0.00 0.07 4.05 -27.88 -0.11 -0.04 16 16 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 20 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 24 C -0.13 -1.63 9.70 -39.58 -0.38 -2.01 16 25 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 28 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 31 H 0.08 0.43 7.02 -51.93 -0.36 0.07 16 32 H 0.14 0.99 7.62 -52.49 -0.40 0.59 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.10 1.12 8.09 -51.92 -0.42 0.70 16 35 H 0.13 0.96 8.09 -51.92 -0.42 0.54 16 36 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 37 H 0.11 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 39 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.14 1.30 7.62 -52.49 -0.40 0.90 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -39.97 378.65 -10.44 -50.41 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -6.14 Total: -3.41 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: -1.15 Total: -34.84 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.31 Total: -33.88 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -2.48 Total: -43.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 44.21 SS G_CDS: -2.02 Total: 42.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.97 -10.44 -50.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190842585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.076 kcal (2) G-P(sol) polarization free energy of solvation -39.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds