Wall clock time and date at job start Wed Apr 1 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99966 * 2 1 4 4 S 1.65599 * 120.00142 * 180.02562 * 2 1 3 5 5 O 1.42107 * 106.40481 * 336.46217 * 4 2 1 6 6 O 1.42103 * 106.40338 * 203.53983 * 4 2 1 7 7 C 1.76203 * 107.22020 * 90.00033 * 4 2 1 8 8 C 1.38235 * 120.00231 * 89.99610 * 7 4 2 9 9 C 1.38234 * 120.00220 * 179.97438 * 8 7 4 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.50693 * 120.00207 * 179.72405 * 10 9 8 12 12 S 1.81401 * 109.47312 * 89.99480 * 11 10 9 13 13 O 1.42103 * 109.46977 * 63.61397 * 12 11 10 14 14 C 1.81395 * 103.00006 * 180.02562 * 12 11 10 15 15 C 1.53007 * 109.47298 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47299 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00115 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99714 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99824 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00333 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47092 * 89.99871 * 20 18 16 22 22 H 1.48504 * 109.47122 * 209.99832 * 20 18 16 23 23 H 1.48505 * 109.46880 * 329.99747 * 20 18 16 24 24 C 1.38238 * 119.99742 * 359.52139 * 10 9 8 25 25 C 1.38234 * 120.00095 * 0.43554 * 24 10 9 26 26 H 1.09001 * 109.47301 * 269.99600 * 1 2 3 27 27 H 1.08999 * 109.47472 * 30.00197 * 1 2 3 28 28 H 1.09004 * 109.47233 * 150.00167 * 1 2 3 29 29 H 1.08997 * 109.47282 * 270.00396 * 3 2 1 30 30 H 1.08997 * 109.46856 * 30.00184 * 3 2 1 31 31 H 1.08995 * 109.46950 * 149.99815 * 3 2 1 32 32 H 1.07999 * 119.99770 * 0.02562 * 8 7 4 33 33 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47097 * 209.99342 * 11 10 9 35 35 H 1.09001 * 109.47081 * 329.99847 * 11 10 9 36 36 H 1.09000 * 109.47424 * 299.99435 * 14 12 11 37 37 H 1.09004 * 109.47564 * 60.00160 * 14 12 11 38 38 H 1.09005 * 109.46803 * 300.00244 * 15 14 12 39 39 H 1.08996 * 109.46994 * 59.99585 * 15 14 12 40 40 H 0.97005 * 120.00090 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.00354 * 180.21032 * 24 10 9 42 42 H 1.08001 * 120.00324 * 179.78922 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4113 -2.4068 0.5433 6 8 3.5760 -1.1570 0.5439 7 6 2.5538 -1.8851 -1.6839 8 6 3.6928 -1.4634 -2.3440 9 6 3.8977 -1.8176 -3.6643 10 6 2.9608 -2.5886 -4.3265 11 6 3.1811 -2.9696 -5.7677 12 16 4.0840 -4.5410 -5.8466 13 8 3.2915 -5.5719 -5.2733 14 6 4.2508 -4.8267 -7.6301 15 6 5.0034 -6.1373 -7.8685 16 6 5.1415 -6.3750 -9.3502 17 1 4.7336 -5.6623 -10.0518 18 6 5.7894 -7.5018 -9.8102 19 7 5.9103 -7.7089 -11.1033 20 14 6.4954 -8.7341 -8.5969 21 1 5.4685 -9.7580 -8.2771 22 1 7.6829 -9.3944 -9.1963 23 1 6.8963 -8.0296 -7.3526 24 6 1.8236 -3.0137 -3.6652 25 6 1.6192 -2.6602 -2.3446 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3791 1.5834 -1.0276 30 1 1.6084 2.0283 0.5139 31 1 3.1498 1.1384 0.5138 32 1 4.4231 -0.8578 -1.8278 33 1 4.7879 -1.4884 -4.1798 34 1 2.2178 -3.0787 -6.2660 35 1 3.7612 -2.1920 -6.2645 36 1 3.2610 -4.8892 -8.0822 37 1 4.8044 -4.0024 -8.0800 38 1 5.9933 -6.0753 -7.4163 39 1 4.4495 -6.9613 -7.4188 40 1 6.3658 -8.5018 -11.4270 41 1 1.0931 -3.6190 -4.1815 42 1 0.7291 -2.9894 -1.8290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190842585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:32 Heat of formation + Delta-G solvation = -114.251446 kcal Electronic energy + Delta-G solvation = -24902.266961 eV Core-core repulsion = 21100.015227 eV Total energy + Delta-G solvation = -3802.251734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.38523 -38.46457 -37.13593 -36.95260 -36.83900 -35.72888 -34.15064 -33.27007 -32.11065 -28.95920 -28.67696 -27.49022 -25.58796 -23.94296 -23.39793 -22.45904 -20.17368 -19.23474 -19.05966 -18.49673 -18.33056 -17.35948 -16.81837 -16.58543 -16.48342 -16.07775 -15.79657 -15.75448 -15.44234 -15.33314 -15.04411 -14.70880 -14.61148 -14.31979 -14.15329 -13.87562 -13.56121 -13.53218 -13.34792 -13.31329 -13.23368 -13.13411 -12.86111 -12.64252 -12.54671 -12.50514 -12.18708 -12.03595 -11.91862 -11.80735 -11.57607 -11.21667 -10.82411 -10.18533 -10.08935 -10.00715 -9.16518 -8.34172 -6.38898 -0.75608 -0.39903 0.25081 0.64374 1.33318 1.35223 1.46029 1.70504 1.90356 2.31836 2.45981 2.69333 2.81588 3.00905 3.17924 3.51992 3.68396 3.86140 3.87753 4.11069 4.20027 4.29467 4.36410 4.41551 4.53041 4.57193 4.58392 4.77615 4.79340 4.82058 4.91674 4.94345 5.00656 5.02944 5.06084 5.09420 5.29910 5.31110 5.37327 5.55116 5.55959 5.79124 6.21812 6.68153 7.25608 8.81852 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.002048 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.376955 B =13671.375887 C =13867.154462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.002 6.002 3 C 0.072 3.928 4 S 2.708 3.292 5 O -0.988 6.988 6 O -0.976 6.976 7 C -0.688 4.688 8 C -0.022 4.022 9 C -0.130 4.130 10 C -0.016 4.016 11 C -0.414 4.414 12 S 1.281 4.719 13 O -0.908 6.908 14 C -0.417 4.417 15 C -0.003 4.003 16 C -0.529 4.529 17 H 0.039 0.961 18 C 0.006 3.994 19 N -0.947 5.947 20 Si 0.936 3.064 21 H -0.281 1.281 22 H -0.275 1.275 23 H -0.234 1.234 24 C -0.157 4.157 25 C -0.030 4.030 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.094 0.906 35 H 0.179 0.821 36 H 0.059 0.941 37 H 0.143 0.857 38 H 0.052 0.948 39 H -0.002 1.002 40 H 0.268 0.732 41 H 0.119 0.881 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 25.131 23.590 34.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.843 5.843 3 C -0.072 4.072 4 S 2.799 3.201 5 O -0.978 6.978 6 O -0.966 6.966 7 C -0.777 4.777 8 C -0.041 4.041 9 C -0.149 4.149 10 C -0.018 4.018 11 C -0.549 4.549 12 S 1.484 4.516 13 O -0.904 6.904 14 C -0.554 4.554 15 C -0.041 4.041 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.587 5.587 20 Si 0.760 3.240 21 H -0.207 1.207 22 H -0.200 1.200 23 H -0.156 1.156 24 C -0.177 4.177 25 C -0.050 4.050 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.203 0.797 34 H 0.113 0.887 35 H 0.197 0.803 36 H 0.078 0.922 37 H 0.161 0.839 38 H 0.071 0.929 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.137 0.863 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.297 23.999 24.936 35.011 hybrid contribution -2.307 -1.380 -2.166 3.452 sum -7.605 22.619 22.770 32.984 Atomic orbital electron populations 1.21756 0.76844 1.04467 1.03242 1.57137 1.16046 1.21313 1.89804 1.21902 0.97412 0.84210 1.03679 1.01351 0.72503 0.72510 0.73757 1.93542 1.66767 1.60170 1.77332 1.93533 1.41166 1.84821 1.77066 1.30962 1.05281 1.14952 1.26469 1.21317 0.93829 0.94461 0.94502 1.21724 1.00465 0.97999 0.94726 1.19690 0.93947 0.94308 0.93825 1.26857 1.12533 1.18376 0.97180 1.69871 1.10755 0.84708 0.86268 1.93007 1.73138 1.53688 1.70546 1.27479 1.04803 1.05177 1.17982 1.19213 0.96668 0.92544 0.95710 1.21395 1.36116 1.07294 0.91964 0.94270 1.25976 0.96218 1.00016 0.96941 1.70041 1.44679 1.29047 1.14927 0.85861 0.78389 0.79216 0.80583 1.20688 1.20001 1.15636 1.21372 0.99140 1.01507 0.95728 1.20952 0.97610 0.92494 0.93896 0.91581 0.88200 0.91316 0.90895 0.88272 0.90199 0.81488 0.79724 0.88685 0.80337 0.92184 0.83884 0.92938 0.98381 0.92355 0.86334 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.29 127.77 1.31 2.01 16 2 N -1.00 -11.75 3.58 -562.70 -2.02 -13.77 16 3 C 0.07 0.48 10.66 127.77 1.36 1.84 16 4 S 2.71 51.18 5.65 -56.49 -0.32 50.86 16 5 O -0.99 -24.98 16.36 -128.00 -2.09 -27.07 16 6 O -0.98 -21.87 15.89 -128.00 -2.03 -23.91 16 7 C -0.69 -13.12 5.97 22.27 0.13 -12.98 16 8 C -0.02 -0.34 9.52 22.27 0.21 -0.13 16 9 C -0.13 -1.84 9.70 22.27 0.22 -1.62 16 10 C -0.02 -0.31 5.14 -19.87 -0.10 -0.42 16 11 C -0.41 -7.50 6.05 71.23 0.43 -7.07 16 12 S 1.28 33.92 13.14 -56.49 -0.74 33.17 16 13 O -0.91 -37.05 18.14 -148.98 -2.70 -39.76 16 14 C -0.42 -14.24 5.86 71.98 0.42 -13.81 16 15 C 0.00 -0.13 4.05 29.85 0.12 -0.01 16 16 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 17 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 18 C 0.01 0.35 5.47 84.65 0.46 0.81 16 19 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 20 Si 0.94 44.19 27.47 68.60 1.88 46.08 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.23 -9.85 6.54 99.48 0.65 -9.20 16 24 C -0.16 -3.72 9.70 22.27 0.22 -3.50 16 25 C -0.03 -0.66 9.52 22.27 0.21 -0.44 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.10 0.34 8.07 -2.39 -0.02 0.32 16 28 H 0.07 0.64 7.79 -2.38 -0.02 0.63 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.25 16 30 H 0.10 0.25 8.07 -2.39 -0.02 0.23 16 31 H 0.08 0.64 7.02 -2.39 -0.02 0.62 16 32 H 0.17 1.68 7.62 -2.91 -0.02 1.66 16 33 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 34 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 35 H 0.18 1.58 8.09 -2.39 -0.02 1.56 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.05 2.14 7.20 -2.38 -0.02 2.12 16 39 H 0.00 -0.11 7.57 -2.39 -0.02 -0.13 16 40 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 41 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.14 2.77 7.62 -2.91 -0.02 2.75 16 Total: -1.00 -90.80 378.65 -1.52 -92.33 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.95 Total: 5.95 kcal Atomic # 6 Polarization: -70.40 SS G_CDS: 5.25 Total: -65.16 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.72 Total: -72.50 kcal Atomic # 8 Polarization: -83.91 SS G_CDS: -6.83 Total: -90.74 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 85.10 SS G_CDS: -1.06 Total: 84.04 kcal Total: -90.80 -1.52 -92.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190842585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.925 kcal (2) G-P(sol) polarization free energy of solvation -90.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds