Wall clock time and date at job start Wed Apr 1 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00072 * 2 1 4 4 H 1.08999 * 109.47527 * 29.99765 * 3 2 1 5 5 C 1.53010 * 109.47016 * 269.99684 * 3 2 1 6 6 C 1.53000 * 109.47120 * 150.00271 * 3 2 1 7 7 S 1.81400 * 109.46812 * 299.99366 * 6 3 2 8 8 O 1.42105 * 110.54242 * 68.37813 * 7 6 3 9 9 O 1.42104 * 110.54361 * 291.62637 * 7 6 3 10 10 N 1.65599 * 104.44997 * 180.02562 * 7 6 3 11 11 C 1.40009 * 119.99924 * 60.05529 * 10 7 6 12 12 C 1.38647 * 120.09868 * 35.48709 * 11 10 7 13 13 C 1.38286 * 119.99849 * 180.02562 * 12 11 10 14 14 C 1.38261 * 120.20955 * 359.97438 * 13 12 11 15 15 C 1.38251 * 120.19668 * 0.02562 * 14 13 12 16 16 C 1.38731 * 119.99261 * 0.02562 * 15 14 13 17 17 S 1.76197 * 120.10049 * 179.97438 * 16 15 14 18 18 C 1.81396 * 103.00154 * 359.97438 * 17 16 15 19 19 C 1.50702 * 109.47361 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99919 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00104 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00069 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99758 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47414 * 59.99669 * 23 21 19 25 25 H 1.48506 * 109.47113 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47127 * 299.99342 * 23 21 19 27 27 H 1.08999 * 109.46588 * 60.00023 * 1 2 3 28 28 H 1.08997 * 109.47253 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47155 * 300.00529 * 1 2 3 30 30 H 1.08999 * 109.47039 * 300.00380 * 5 3 2 31 31 H 1.08996 * 109.46631 * 59.99848 * 5 3 2 32 32 H 1.09000 * 109.47202 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46804 * 180.02562 * 6 3 2 34 34 H 1.08999 * 109.47333 * 59.99376 * 6 3 2 35 35 H 0.97002 * 119.99817 * 240.04447 * 10 7 6 36 36 H 1.07993 * 119.99844 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.89373 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.90604 * 179.74636 * 14 13 12 39 39 H 1.08002 * 120.00387 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47030 * 299.99748 * 18 17 16 41 41 H 1.08997 * 109.47499 * 59.99728 * 18 17 16 42 42 H 0.97000 * 120.00081 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7713 -1.4426 6 6 3.3590 1.2632 0.7212 7 16 3.1130 0.7109 2.4315 8 8 2.7176 -0.6536 2.4629 9 8 2.4092 1.6950 3.1769 10 7 4.6330 0.7114 3.0886 11 6 5.3722 1.8993 3.1421 12 6 4.7310 3.1075 3.3688 13 6 5.4630 4.2796 3.4207 14 6 6.8344 4.2516 3.2476 15 6 7.4823 3.0515 3.0211 16 6 6.7560 1.8708 2.9663 17 16 7.5787 0.3398 2.6771 18 6 9.3172 0.8337 2.5218 19 6 10.1651 -0.3858 2.2669 20 1 9.7042 -1.3605 2.2041 21 6 11.5292 -0.2571 2.1127 22 7 12.0903 0.9300 2.1876 23 14 12.5800 -1.7687 1.7960 24 1 12.1373 -2.4250 0.5397 25 1 14.0033 -1.3643 1.6689 26 1 12.4351 -2.7184 2.9284 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.8830 1.0773 -1.9564 31 1 1.2570 1.8013 -1.9564 32 1 2.6616 2.7668 -1.4426 33 1 3.8021 2.2591 0.7216 34 1 4.0242 0.5692 0.2074 35 1 5.0113 -0.1113 3.4365 36 1 3.6600 3.1332 3.5048 37 1 4.9618 5.2198 3.5978 38 1 7.4008 5.1704 3.2851 39 1 8.5538 3.0331 2.8868 40 1 9.4241 1.5303 1.6903 41 1 9.6417 1.3160 3.4438 42 1 13.0499 1.0205 2.0788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193326519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:25 Heat of formation + Delta-G solvation = -97.034533 kcal Electronic energy + Delta-G solvation = -25851.506648 eV Core-core repulsion = 22050.001496 eV Total energy + Delta-G solvation = -3801.505152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.22746 -38.80427 -37.16725 -36.05958 -34.95235 -33.30330 -33.28498 -30.91653 -28.88625 -28.65823 -28.17924 -26.88338 -23.53927 -22.83292 -22.18240 -21.89270 -19.47572 -18.14429 -17.69414 -17.34114 -16.90388 -16.62832 -16.30942 -15.64418 -15.44755 -15.15500 -15.04186 -14.60704 -14.46510 -13.70919 -13.56529 -13.40575 -13.12680 -13.07632 -12.91879 -12.71494 -12.59480 -12.43453 -12.30843 -12.17305 -11.99091 -11.89393 -11.68492 -11.28087 -11.18953 -10.96090 -10.93856 -10.83491 -10.60014 -10.09964 -10.03357 -9.75985 -9.39609 -9.19619 -8.69411 -8.31872 -6.70786 -6.32376 -4.38410 0.06046 1.46486 1.50602 2.27360 2.57942 3.21194 3.21245 3.24931 3.28552 3.51953 3.56753 3.85018 4.08545 4.22644 4.25287 4.45523 4.71139 4.85675 4.97222 5.01672 5.04876 5.05416 5.17258 5.22545 5.27467 5.30789 5.41686 5.54816 5.57636 5.72401 5.80740 5.92347 6.18099 6.38659 6.57679 6.70300 6.70859 6.86362 6.87567 6.90867 7.17166 7.60394 7.82854 8.62575 9.26161 10.78688 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003126 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.762886 B = 8955.991695 C = 9958.533252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.381 6.381 3 C 0.095 3.905 4 H 0.077 0.923 5 C -0.166 4.166 6 C -0.628 4.628 7 S 2.611 3.389 8 O -0.936 6.936 9 O -0.955 6.955 10 N -1.048 6.048 11 C 0.150 3.850 12 C -0.163 4.163 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.113 4.113 16 C -0.087 4.087 17 S -0.155 6.155 18 C 0.073 3.927 19 C -0.521 4.521 20 H 0.068 0.932 21 C 0.069 3.931 22 N -0.889 5.889 23 Si 0.909 3.091 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.429 0.571 36 H 0.158 0.842 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.601 6.264 -3.772 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.300 6.300 3 C 0.036 3.964 4 H 0.095 0.905 5 C -0.224 4.224 6 C -0.757 4.757 7 S 2.705 3.295 8 O -0.926 6.926 9 O -0.945 6.945 10 N -0.798 5.798 11 C 0.047 3.953 12 C -0.185 4.185 13 C -0.136 4.136 14 C -0.135 4.135 15 C -0.138 4.138 16 C -0.204 4.204 17 S 0.092 5.908 18 C -0.074 4.074 19 C -0.561 4.561 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.267 0.733 36 H 0.175 0.825 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.576 4.788 -3.500 21.414 hybrid contribution 1.826 0.690 -0.429 1.999 sum -18.750 5.478 -3.929 19.925 Atomic orbital electron populations 1.22934 0.80224 1.03736 1.00286 1.88071 1.20461 1.26363 1.95115 1.21710 0.91226 0.85899 0.97593 0.90533 1.22210 1.02889 1.02321 0.95014 1.30685 1.05798 1.14648 1.24550 1.05126 0.72593 0.74769 0.76985 1.93624 1.79624 1.32817 1.86526 1.93526 1.71064 1.62383 1.67480 1.53386 1.36772 1.15875 1.73761 1.16927 0.89744 0.85186 1.03405 1.21777 1.02395 0.91280 1.03055 1.20910 0.93882 0.97478 1.01321 1.21109 0.94563 0.97606 1.00177 1.21350 1.00703 0.91269 1.00451 1.22061 0.95110 0.99363 1.03912 1.85292 1.10649 1.07791 1.87026 1.21399 0.84401 1.00817 1.00804 1.20573 0.91388 0.92542 1.51565 0.91345 1.24941 0.97417 0.96753 0.94438 1.69925 1.11796 1.22506 1.48424 0.86377 0.78778 0.82128 0.79204 1.19800 1.20954 1.19793 0.93473 0.88728 0.93626 0.90964 0.91773 0.90931 0.83406 0.83263 0.73266 0.82464 0.85690 0.85846 0.84535 0.93679 0.93696 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 101.05 1.09 1.29 16 2 O -0.38 -4.38 9.39 -41.98 -0.39 -4.77 16 3 C 0.10 0.93 2.77 -26.73 -0.07 0.85 16 4 H 0.08 0.62 7.79 -51.93 -0.40 0.21 16 5 C -0.17 -1.31 9.53 37.16 0.35 -0.95 16 6 C -0.63 -6.63 5.62 37.16 0.21 -6.42 16 7 S 2.61 34.96 5.03 -107.50 -0.54 34.42 16 8 O -0.94 -15.14 17.41 -61.89 -1.08 -16.22 16 9 O -0.95 -13.83 15.06 -57.54 -0.87 -14.69 16 10 N -1.05 -15.20 5.37 32.55 0.17 -15.02 16 11 C 0.15 2.33 6.14 -83.49 -0.51 1.82 16 12 C -0.16 -2.26 9.25 -39.41 -0.36 -2.62 16 13 C -0.11 -1.43 10.04 -39.56 -0.40 -1.83 16 14 C -0.11 -1.56 10.04 -39.57 -0.40 -1.95 16 15 C -0.11 -1.89 9.36 -39.39 -0.37 -2.26 16 16 C -0.09 -1.54 6.12 -38.92 -0.24 -1.78 16 17 S -0.15 -3.15 20.74 -107.50 -2.23 -5.38 16 18 C 0.07 1.76 4.09 36.01 0.15 1.91 16 19 C -0.52 -13.92 9.13 -34.44 -0.31 -14.24 16 20 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 23 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.15 1.30 8.14 -51.92 -0.42 0.87 16 34 H 0.15 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.43 6.22 8.09 -34.47 -0.28 5.94 16 36 H 0.16 2.08 5.18 -52.49 -0.27 1.81 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.14 2.47 5.88 -52.49 -0.31 2.16 16 40 H 0.05 1.13 7.75 -51.92 -0.40 0.73 16 41 H 0.04 1.13 7.75 -51.93 -0.40 0.73 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -32.09 374.61 -10.34 -42.43 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.80 Total: 6.37 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -0.96 Total: -24.42 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.91 Total: -38.95 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -2.34 Total: -35.68 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 31.81 SS G_CDS: -2.77 Total: 29.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.09 -10.34 -42.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193326519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.605 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds