Wall clock time and date at job start Wed Apr 1 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00072 * 2 1 4 4 H 1.08999 * 109.47527 * 29.99765 * 3 2 1 5 5 C 1.53010 * 109.47016 * 269.99684 * 3 2 1 6 6 C 1.53000 * 109.47120 * 150.00271 * 3 2 1 7 7 S 1.81400 * 109.46812 * 299.99366 * 6 3 2 8 8 O 1.42105 * 110.54242 * 68.37813 * 7 6 3 9 9 O 1.42104 * 110.54361 * 291.62637 * 7 6 3 10 10 N 1.65599 * 104.44997 * 180.02562 * 7 6 3 11 11 C 1.40009 * 119.99924 * 60.05529 * 10 7 6 12 12 C 1.38647 * 120.09868 * 35.48709 * 11 10 7 13 13 C 1.38286 * 119.99849 * 180.02562 * 12 11 10 14 14 C 1.38261 * 120.20955 * 359.97438 * 13 12 11 15 15 C 1.38251 * 120.19668 * 0.02562 * 14 13 12 16 16 C 1.38731 * 119.99261 * 0.02562 * 15 14 13 17 17 S 1.76197 * 120.10049 * 179.97438 * 16 15 14 18 18 C 1.81396 * 103.00154 * 359.97438 * 17 16 15 19 19 C 1.50702 * 109.47361 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99919 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00104 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00069 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99758 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47414 * 59.99669 * 23 21 19 25 25 H 1.48506 * 109.47113 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47127 * 299.99342 * 23 21 19 27 27 H 1.08999 * 109.46588 * 60.00023 * 1 2 3 28 28 H 1.08997 * 109.47253 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47155 * 300.00529 * 1 2 3 30 30 H 1.08999 * 109.47039 * 300.00380 * 5 3 2 31 31 H 1.08996 * 109.46631 * 59.99848 * 5 3 2 32 32 H 1.09000 * 109.47202 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46804 * 180.02562 * 6 3 2 34 34 H 1.08999 * 109.47333 * 59.99376 * 6 3 2 35 35 H 0.97002 * 119.99817 * 240.04447 * 10 7 6 36 36 H 1.07993 * 119.99844 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.89373 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.90604 * 179.74636 * 14 13 12 39 39 H 1.08002 * 120.00387 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47030 * 299.99748 * 18 17 16 41 41 H 1.08997 * 109.47499 * 59.99728 * 18 17 16 42 42 H 0.97000 * 120.00081 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7713 -1.4426 6 6 3.3590 1.2632 0.7212 7 16 3.1130 0.7109 2.4315 8 8 2.7176 -0.6536 2.4629 9 8 2.4092 1.6950 3.1769 10 7 4.6330 0.7114 3.0886 11 6 5.3722 1.8993 3.1421 12 6 4.7310 3.1075 3.3688 13 6 5.4630 4.2796 3.4207 14 6 6.8344 4.2516 3.2476 15 6 7.4823 3.0515 3.0211 16 6 6.7560 1.8708 2.9663 17 16 7.5787 0.3398 2.6771 18 6 9.3172 0.8337 2.5218 19 6 10.1651 -0.3858 2.2669 20 1 9.7042 -1.3605 2.2041 21 6 11.5292 -0.2571 2.1127 22 7 12.0903 0.9300 2.1876 23 14 12.5800 -1.7687 1.7960 24 1 12.1373 -2.4250 0.5397 25 1 14.0033 -1.3643 1.6689 26 1 12.4351 -2.7184 2.9284 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.8830 1.0773 -1.9564 31 1 1.2570 1.8013 -1.9564 32 1 2.6616 2.7668 -1.4426 33 1 3.8021 2.2591 0.7216 34 1 4.0242 0.5692 0.2074 35 1 5.0113 -0.1113 3.4365 36 1 3.6600 3.1332 3.5048 37 1 4.9618 5.2198 3.5978 38 1 7.4008 5.1704 3.2851 39 1 8.5538 3.0331 2.8868 40 1 9.4241 1.5303 1.6903 41 1 9.6417 1.3160 3.4438 42 1 13.0499 1.0205 2.0788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193326519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:24 Heat of formation + Delta-G solvation = -118.129372 kcal Electronic energy + Delta-G solvation = -25852.421389 eV Core-core repulsion = 22050.001496 eV Total energy + Delta-G solvation = -3802.419893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42003 -39.53324 -38.30308 -37.19874 -36.12849 -35.32131 -34.02785 -32.17134 -30.64711 -30.03191 -28.89739 -27.53141 -25.44409 -24.02219 -23.35397 -22.74638 -20.56648 -19.47136 -18.79818 -18.46570 -18.10366 -17.87125 -17.65741 -16.85368 -16.53247 -16.37679 -16.01375 -15.84029 -15.72542 -14.94611 -14.82247 -14.68880 -14.38805 -14.28266 -14.18441 -13.80255 -13.66754 -13.55632 -13.35471 -13.27331 -13.19202 -13.06244 -12.76270 -12.61600 -12.52211 -12.29712 -12.14855 -11.96528 -11.77871 -11.67546 -11.52446 -10.94176 -10.87169 -10.75982 -10.55846 -9.50691 -8.36865 -8.25279 -6.50730 -0.98018 0.25797 0.31829 0.78229 1.40052 1.42182 1.45922 1.51058 1.82630 2.34522 2.48701 2.55558 2.68445 2.98633 3.09721 3.41028 3.73449 3.84832 3.93161 4.02661 4.14285 4.17683 4.38957 4.44344 4.49102 4.54748 4.56401 4.75018 4.76540 4.84579 4.86763 4.88982 4.89586 5.03297 5.23757 5.24306 5.38573 5.51987 5.56595 5.71274 5.81967 6.01453 6.04114 6.55905 7.18056 8.74794 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003126 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.762886 B = 8955.991695 C = 9958.533252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.411 6.411 3 C 0.085 3.915 4 H 0.096 0.904 5 C -0.164 4.164 6 C -0.614 4.614 7 S 2.615 3.385 8 O -0.969 6.969 9 O -0.967 6.967 10 N -1.054 6.054 11 C 0.154 3.846 12 C -0.164 4.164 13 C -0.091 4.091 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.112 4.112 17 S -0.161 6.161 18 C 0.081 3.919 19 C -0.544 4.544 20 H 0.065 0.935 21 C 0.021 3.979 22 N -0.920 5.920 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.267 1.267 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.150 0.850 35 H 0.426 0.574 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.112 0.888 40 H 0.025 0.975 41 H 0.022 0.978 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.166 7.824 -4.416 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.331 6.331 3 C 0.026 3.974 4 H 0.113 0.887 5 C -0.223 4.223 6 C -0.746 4.746 7 S 2.712 3.288 8 O -0.959 6.959 9 O -0.957 6.957 10 N -0.802 5.802 11 C 0.052 3.948 12 C -0.186 4.186 13 C -0.112 4.112 14 C -0.130 4.130 15 C -0.153 4.153 16 C -0.229 4.229 17 S 0.085 5.915 18 C -0.066 4.066 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.181 4.181 22 N -0.558 5.558 23 Si 0.797 3.203 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.192 1.192 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.188 0.812 34 H 0.168 0.832 35 H 0.263 0.737 36 H 0.187 0.813 37 H 0.187 0.813 38 H 0.170 0.830 39 H 0.130 0.870 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.168 6.362 -4.103 23.425 hybrid contribution 2.146 0.350 -0.223 2.185 sum -20.022 6.713 -4.326 21.556 Atomic orbital electron populations 1.23169 0.78874 1.04575 1.01687 1.88034 1.22164 1.27540 1.95349 1.21985 0.90729 0.85867 0.98859 0.88663 1.22224 1.03735 1.02750 0.93569 1.30609 1.07105 1.15724 1.21155 1.04948 0.71871 0.73964 0.78001 1.93582 1.80065 1.34813 1.87484 1.93493 1.71241 1.62117 1.68835 1.53473 1.36804 1.15620 1.74332 1.17039 0.88831 0.86154 1.02799 1.22034 1.03043 0.90919 1.02635 1.21407 0.93195 0.98670 0.97913 1.21410 0.95425 0.97232 0.98975 1.21321 0.99803 0.92547 1.01586 1.21968 0.95897 0.97909 1.07140 1.84994 1.07774 1.10303 1.88456 1.20996 0.87410 0.99513 0.98709 1.20930 0.92391 0.93134 1.51855 0.91711 1.25839 0.98647 0.99729 0.93904 1.70029 1.12231 1.24473 1.49054 0.85366 0.77178 0.78481 0.79285 1.19070 1.20093 1.19234 0.91148 0.88379 0.93132 0.91917 0.90238 0.89409 0.81172 0.83179 0.73689 0.81268 0.81331 0.82978 0.86966 0.95633 0.95975 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.82 113.37 1.23 1.41 16 2 O -0.41 -8.95 9.39 -142.53 -1.34 -10.29 16 3 C 0.08 1.47 2.77 30.60 0.08 1.55 16 4 H 0.10 1.26 7.79 -2.39 -0.02 1.24 16 5 C -0.16 -2.15 9.53 71.99 0.69 -1.46 16 6 C -0.61 -11.92 5.62 71.98 0.40 -11.51 16 7 S 2.61 68.02 5.03 -56.49 -0.28 67.74 16 8 O -0.97 -31.66 17.41 -123.49 -2.15 -33.81 16 9 O -0.97 -26.46 15.06 -127.65 -1.92 -28.38 16 10 N -1.05 -30.39 5.37 -50.95 -0.27 -30.66 16 11 C 0.15 4.65 6.14 38.24 0.23 4.88 16 12 C -0.16 -4.08 9.25 22.38 0.21 -3.87 16 13 C -0.09 -1.91 10.04 22.29 0.22 -1.68 16 14 C -0.11 -2.73 10.04 22.28 0.22 -2.50 16 15 C -0.13 -4.32 9.36 22.39 0.21 -4.11 16 16 C -0.11 -4.00 6.12 22.70 0.14 -3.86 16 17 S -0.16 -6.81 20.74 -56.49 -1.17 -7.98 16 18 C 0.08 4.16 4.09 71.24 0.29 4.45 16 19 C -0.54 -30.12 9.13 25.60 0.23 -29.89 16 20 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 21 C 0.02 1.13 5.46 84.65 0.46 1.59 16 22 N -0.92 -52.38 13.29 21.45 0.28 -52.09 16 23 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 0.68 8.09 -2.38 -0.02 0.66 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.80 7.87 -2.39 -0.02 0.78 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.17 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.15 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.43 12.71 8.09 -96.74 -0.78 11.92 16 36 H 0.17 3.91 5.18 -2.91 -0.02 3.90 16 37 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.11 4.31 5.88 -2.91 -0.02 4.29 16 40 H 0.03 1.37 7.75 -2.39 -0.02 1.35 16 41 H 0.02 1.20 7.75 -2.39 -0.02 1.18 16 42 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.36 374.61 0.05 -71.31 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.26 Total: 24.57 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 4.63 Total: -45.00 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: 0.01 Total: -82.76 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: -5.41 Total: -72.49 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 61.21 SS G_CDS: -1.46 Total: 59.75 kcal Total: -71.36 0.05 -71.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193326519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.823 kcal (2) G-P(sol) polarization free energy of solvation -71.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds