Wall clock time and date at job start Wed Apr 1 2020 02:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47095 * 2 1 4 4 C 1.50704 * 109.47010 * 120.00141 * 2 1 3 5 5 H 1.07995 * 120.00459 * 120.00139 * 4 2 1 6 6 C 1.37880 * 119.99652 * 299.99616 * 4 2 1 7 7 N 1.31513 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99736 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47055 * 60.00128 * 8 6 4 10 10 H 1.48499 * 109.46850 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46873 * 299.99920 * 8 6 4 12 12 N 1.46497 * 109.47051 * 239.99731 * 2 1 3 13 13 C 1.34777 * 120.00054 * 85.00003 * 12 2 1 14 14 O 1.21778 * 119.99639 * 359.97438 * 13 12 2 15 15 C 1.41707 * 120.00268 * 179.97438 * 13 12 2 16 16 S 1.75815 * 125.47959 * 359.97438 * 15 13 12 17 17 C 1.70563 * 91.68734 * 180.02562 * 16 15 13 18 18 C 1.33543 * 111.20579 * 359.72809 * 17 16 15 19 19 C 1.37455 * 125.48432 * 180.02562 * 15 13 12 20 20 N 1.39454 * 123.50172 * 359.97438 * 19 15 13 21 21 C 1.34778 * 119.99798 * 174.01648 * 20 19 15 22 22 O 1.21531 * 119.99924 * 5.40963 * 21 20 19 23 23 C 1.48102 * 120.00477 * 185.40328 * 21 20 19 24 24 C 1.39837 * 120.92043 * 359.72502 * 23 21 20 25 25 C 1.38139 * 118.99925 * 179.79383 * 24 23 21 26 26 N 1.31825 * 120.89829 * 0.48900 * 25 24 23 27 27 C 1.31816 * 122.04686 * 359.73716 * 26 25 24 28 28 C 1.38135 * 120.90379 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47024 * 300.00000 * 1 2 3 31 31 H 1.08999 * 109.47122 * 60.00049 * 1 2 3 32 32 H 0.97000 * 119.99867 * 179.97438 * 7 6 4 33 33 H 0.97002 * 119.99896 * 265.00026 * 12 2 1 34 34 H 1.08003 * 124.40042 * 180.02562 * 17 16 15 35 35 H 1.08002 * 122.45622 * 180.27445 * 18 17 16 36 36 H 0.96996 * 120.00373 * 354.29197 * 20 19 15 37 37 H 1.08003 * 120.50274 * 0.02562 * 24 23 21 38 38 H 1.08001 * 119.55247 * 180.22821 * 25 24 23 39 39 H 1.08002 * 119.54315 * 180.02562 * 27 26 25 40 40 H 1.07998 * 120.50378 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1190 4.0078 10 1 1.8269 -0.4198 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8570 1.1631 -2.4119 15 6 2.6199 -0.6863 -3.5140 16 16 3.0790 -2.3814 -3.5977 17 6 3.4741 -2.2448 -5.2513 18 6 3.2638 -1.0037 -5.6974 19 6 2.7944 -0.1129 -4.7511 20 7 2.5204 1.2269 -5.0240 21 6 2.8299 1.7462 -6.2286 22 8 3.2565 1.0257 -7.1095 23 6 2.6502 3.1948 -6.4790 24 6 2.1554 4.0405 -5.4813 25 6 2.0076 5.3861 -5.7565 26 7 2.3168 5.8725 -6.9421 27 6 2.7817 5.1097 -7.9115 28 6 2.9652 3.7539 -7.7214 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7082 1.1609 3.4844 33 1 2.2490 -1.6318 -1.1525 34 1 3.8418 -3.0577 -5.8600 35 1 3.4505 -0.7165 -6.7216 36 1 2.1106 1.7862 -4.3457 37 1 1.8962 3.6482 -4.5090 38 1 1.6298 6.0480 -4.9913 39 1 3.0224 5.5510 -8.8674 40 1 3.3469 3.1351 -8.5200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194640781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:48 Heat of formation + Delta-G solvation = -11.843572 kcal Electronic energy + Delta-G solvation = -26628.034870 eV Core-core repulsion = 22727.072674 eV Total energy + Delta-G solvation = -3900.962195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27302 -41.06609 -40.35024 -38.43843 -36.70216 -35.51181 -34.38671 -33.62362 -32.31817 -31.80386 -29.91352 -27.35673 -26.87828 -25.19083 -24.46327 -23.63351 -22.53713 -21.72783 -20.77691 -19.74162 -19.66171 -18.07546 -17.68414 -17.32582 -16.96284 -16.77819 -16.72958 -16.62534 -16.29929 -15.99873 -15.61054 -15.20720 -15.03675 -14.88164 -14.72265 -14.57746 -14.44933 -14.10417 -13.69621 -13.55953 -12.98661 -12.86654 -12.78176 -12.73255 -12.27887 -12.16169 -12.09182 -11.87713 -11.32043 -11.13031 -11.12201 -10.98756 -10.62039 -10.59435 -10.28285 -10.05643 -9.63965 -9.01532 -8.18127 -6.35438 -0.81396 -0.35326 0.01219 0.42423 0.85180 1.17718 1.45730 1.47292 1.55069 1.69592 1.81385 2.29251 2.35148 2.61573 2.74418 3.12632 3.16280 3.43276 3.66633 3.82439 3.88523 3.97313 4.06371 4.20738 4.45982 4.63702 4.67526 4.71399 4.75271 4.78669 4.91837 4.97429 4.99764 5.08108 5.40085 5.44658 5.52559 5.55546 5.66049 5.86586 6.06755 6.14397 6.64144 6.70276 6.81024 6.82201 7.26279 7.41810 8.87910 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.002990 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.917490 B = 9362.256941 C =11384.626437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.007 0.993 4 C -0.551 4.551 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.700 5.700 13 C 0.582 3.418 14 O -0.595 6.595 15 C -0.361 4.361 16 S 0.269 5.731 17 C -0.186 4.186 18 C -0.194 4.194 19 C 0.211 3.789 20 N -0.637 5.637 21 C 0.561 3.439 22 O -0.524 6.524 23 C -0.105 4.105 24 C -0.143 4.143 25 C 0.097 3.903 26 N -0.483 5.483 27 C 0.099 3.901 28 C -0.109 4.109 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.015 0.985 32 H 0.266 0.734 33 H 0.399 0.601 34 H 0.213 0.787 35 H 0.182 0.818 36 H 0.427 0.573 37 H 0.141 0.859 38 H 0.185 0.815 39 H 0.199 0.801 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -1.569 -19.874 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.171 3.829 3 H 0.025 0.975 4 C -0.589 4.589 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.347 5.347 13 C 0.372 3.628 14 O -0.481 6.481 15 C -0.484 4.484 16 S 0.535 5.465 17 C -0.325 4.325 18 C -0.226 4.226 19 C 0.097 3.903 20 N -0.284 5.284 21 C 0.350 3.650 22 O -0.401 6.401 23 C -0.117 4.117 24 C -0.164 4.164 25 C -0.059 4.059 26 N -0.192 5.192 27 C -0.058 4.058 28 C -0.130 4.130 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.230 0.770 35 H 0.199 0.801 36 H 0.271 0.729 37 H 0.159 0.841 38 H 0.202 0.798 39 H 0.216 0.784 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.600 -1.394 -19.425 20.011 hybrid contribution 0.009 0.017 0.657 0.657 sum 4.609 -1.377 -18.768 19.375 Atomic orbital electron populations 1.21910 0.98069 0.99481 0.99823 1.18390 0.91212 0.92103 0.81242 0.97543 1.21501 1.32863 1.13704 0.90854 0.91051 1.25747 0.94788 0.95545 1.02143 1.70027 1.36736 1.23776 1.24732 0.85431 0.78664 0.78794 0.77678 1.19627 1.21105 1.18858 1.46176 1.65066 1.13714 1.09783 1.16036 0.77632 0.86213 0.82873 1.90561 1.55103 1.16982 1.85414 1.23172 1.25183 1.02756 0.97249 1.82837 1.57954 1.00895 1.04773 1.25727 1.04032 1.01949 1.00781 1.20704 1.06575 0.92280 1.03052 1.17512 0.95887 0.84981 0.91882 1.43539 1.58622 1.09643 1.16618 1.18680 0.76755 0.88328 0.81234 1.90557 1.44998 1.60467 1.44118 1.20201 1.02776 0.91751 0.96930 1.22587 0.98126 0.95788 0.99851 1.23147 0.95282 0.92885 0.94622 1.67676 1.09454 1.40715 1.01390 1.23397 0.93692 0.89527 0.99173 1.22520 0.97045 0.97296 0.96123 0.94302 0.91184 0.96616 0.92463 0.76621 0.76980 0.80119 0.72907 0.84088 0.79794 0.78401 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 9.26 71.98 0.67 -6.01 16 2 C 0.27 13.99 2.56 44.25 0.11 14.11 16 3 H 0.01 0.40 7.58 -2.39 -0.02 0.38 16 4 C -0.55 -28.84 8.73 25.60 0.22 -28.62 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -51.41 11.32 21.45 0.24 -51.17 16 8 Si 0.97 41.29 29.54 68.60 2.03 43.31 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 N -0.70 -29.56 5.06 -454.97 -2.30 -31.86 16 13 C 0.58 23.83 7.56 85.10 0.64 24.48 16 14 O -0.60 -27.30 14.14 -4.60 -0.07 -27.37 16 15 C -0.36 -11.80 6.29 22.94 0.14 -11.66 16 16 S 0.27 6.08 22.00 -56.49 -1.24 4.84 16 17 C -0.19 -3.59 10.89 66.76 0.73 -2.87 16 18 C -0.19 -4.97 9.09 21.19 0.19 -4.77 16 19 C 0.21 6.56 6.63 37.73 0.25 6.81 16 20 N -0.64 -19.44 5.29 -307.79 -1.63 -21.07 16 21 C 0.56 15.41 7.75 86.86 0.67 16.09 16 22 O -0.52 -15.10 13.22 -3.81 -0.05 -15.15 16 23 C -0.11 -2.43 5.91 -19.88 -0.12 -2.55 16 24 C -0.14 -3.16 9.61 22.63 0.22 -2.94 16 25 C 0.10 1.90 11.17 84.67 0.95 2.84 16 26 N -0.48 -9.64 10.34 -196.01 -2.03 -11.67 16 27 C 0.10 1.57 11.17 84.67 0.95 2.52 16 28 C -0.11 -1.98 9.68 22.63 0.22 -1.76 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 3.80 6.07 -2.38 -0.01 3.79 16 31 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.40 14.61 7.51 -92.71 -0.70 13.91 16 34 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.18 4.70 5.21 -3.92 -0.02 4.68 16 36 H 0.43 13.75 4.40 -92.71 -0.41 13.34 16 37 H 0.14 3.23 6.55 -2.91 -0.02 3.21 16 38 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.16 2.44 7.74 -2.91 -0.02 2.42 16 Total: -1.00 -68.56 355.39 1.27 -67.29 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.02 Total: 35.77 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.29 Total: 7.07 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.71 Total: -115.76 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.12 Total: -42.52 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.24 Total: 4.84 kcal Total: -68.56 1.27 -67.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.444 kcal (2) G-P(sol) polarization free energy of solvation -68.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds