Wall clock time and date at job start Wed Apr 1 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47896 * 2 1 4 4 C 1.50707 * 109.47126 * 239.99919 * 2 1 3 5 5 H 1.07999 * 120.00330 * 240.00284 * 4 2 1 6 6 C 1.37875 * 119.99533 * 60.00109 * 4 2 1 7 7 N 1.31517 * 120.00455 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99836 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47196 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47370 * 120.00067 * 8 6 4 11 11 H 1.48502 * 109.47033 * 240.00052 * 8 6 4 12 12 N 1.46504 * 109.47436 * 120.00551 * 2 1 3 13 13 C 1.34783 * 119.99301 * 274.99764 * 12 2 1 14 14 O 1.21764 * 120.00373 * 359.97438 * 13 12 2 15 15 C 1.41713 * 119.99354 * 179.97438 * 13 12 2 16 16 S 1.75810 * 125.48456 * 0.02669 * 15 13 12 17 17 C 1.70557 * 91.69086 * 179.97438 * 16 15 13 18 18 C 1.33542 * 111.20728 * 359.97438 * 17 16 15 19 19 C 1.37456 * 125.47983 * 179.71525 * 15 13 12 20 20 N 1.39449 * 123.50539 * 0.04025 * 19 15 13 21 21 C 1.34776 * 120.00252 * 173.52621 * 20 19 15 22 22 O 1.21530 * 119.99864 * 5.40627 * 21 20 19 23 23 C 1.48105 * 120.00321 * 185.41064 * 21 20 19 24 24 C 1.39834 * 120.92541 * 359.72138 * 23 21 20 25 25 C 1.38136 * 119.00057 * 179.72886 * 24 23 21 26 26 N 1.31821 * 120.89866 * 0.55894 * 25 24 23 27 27 C 1.31815 * 122.04953 * 359.71072 * 26 25 24 28 28 C 1.38138 * 120.90130 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.46689 * 299.99989 * 1 2 3 30 30 H 1.08994 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47036 * 59.99546 * 1 2 3 32 32 H 0.96997 * 120.00403 * 179.97438 * 7 6 4 33 33 H 0.96999 * 120.00381 * 94.99371 * 12 2 1 34 34 H 1.08003 * 124.40087 * 179.97438 * 17 16 15 35 35 H 1.07993 * 122.46218 * 180.02562 * 18 17 16 36 36 H 0.97004 * 120.00309 * 353.52683 * 20 19 15 37 37 H 1.08004 * 120.49989 * 359.97438 * 24 23 21 38 38 H 1.08002 * 119.55414 * 180.25188 * 25 24 23 39 39 H 1.08009 * 119.55270 * 179.97438 * 27 26 25 40 40 H 1.07997 * 120.50382 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8580 1.1632 2.4117 15 6 2.6191 -0.6866 3.5143 16 16 3.0769 -2.3819 3.5983 17 6 3.4715 -2.2456 5.2520 18 6 3.2679 -1.0028 5.6963 19 6 2.7983 -0.1120 4.7500 20 7 2.5304 1.2293 5.0215 21 6 2.6062 1.6892 6.2861 22 8 3.0024 0.9610 7.1747 23 6 2.2063 3.0818 6.5929 24 6 1.7530 3.9381 5.5846 25 6 1.3850 5.2275 5.9163 26 7 1.4672 5.6562 7.1602 27 6 1.8941 4.8840 8.1394 28 6 2.2775 3.5790 7.8981 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 0.7095 1.1619 -3.4843 33 1 2.2490 -1.6319 1.1525 34 1 3.8383 -3.0587 5.8608 35 1 3.4600 -0.7142 6.7191 36 1 2.2896 1.8315 4.3001 37 1 1.6878 3.5952 4.5625 38 1 1.0297 5.8951 5.1453 39 1 1.9457 5.2771 9.1441 40 1 2.6260 2.9518 8.7052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194640797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:52 Heat of formation + Delta-G solvation = 8.432505 kcal Electronic energy + Delta-G solvation = -26628.869968 eV Core-core repulsion = 22728.787009 eV Total energy + Delta-G solvation = -3900.082959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23919 -40.03780 -39.00905 -37.26394 -34.93119 -34.40510 -32.77152 -32.51813 -31.54161 -30.24288 -28.40335 -25.85916 -25.30855 -24.17325 -23.64818 -22.17567 -21.47588 -20.00633 -19.52788 -18.77088 -18.26692 -16.65892 -16.50416 -16.07884 -15.95759 -15.70842 -15.59883 -15.15051 -14.97273 -14.54753 -14.34403 -14.14012 -14.04711 -13.98137 -13.68923 -13.16947 -12.89648 -12.55054 -12.46333 -12.01938 -11.77873 -11.14732 -11.05888 -11.02021 -10.82331 -10.80370 -10.37130 -10.30154 -10.28177 -10.26244 -9.78019 -9.53041 -9.39666 -9.12047 -8.78040 -8.61560 -8.08878 -7.89058 -6.18400 -4.27704 0.20033 0.64466 0.76735 1.49557 1.87259 2.20835 2.79488 2.87447 3.20326 3.28477 3.31082 3.53679 3.74797 4.04055 4.11045 4.15430 4.34515 4.44593 4.62716 4.74695 4.88062 5.14348 5.16462 5.24540 5.42667 5.44554 5.50021 5.63598 5.70634 5.92717 6.01387 6.26019 6.53673 6.74952 6.87929 7.06464 7.20759 7.33857 7.46059 7.57204 7.62151 7.74948 7.82891 8.07107 8.50240 8.67273 8.92556 9.39681 10.87668 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002979 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.102770 B = 9396.989800 C =11439.985749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.698 5.698 13 C 0.583 3.417 14 O -0.565 6.565 15 C -0.310 4.310 16 S 0.220 5.780 17 C -0.221 4.221 18 C -0.170 4.170 19 C 0.210 3.790 20 N -0.629 5.629 21 C 0.561 3.439 22 O -0.513 6.513 23 C -0.089 4.089 24 C -0.135 4.135 25 C 0.100 3.900 26 N -0.468 5.468 27 C 0.093 3.907 28 C -0.113 4.113 29 H 0.015 0.985 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.171 0.829 35 H 0.182 0.818 36 H 0.431 0.569 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 0.071 18.611 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.344 5.344 13 C 0.371 3.629 14 O -0.448 6.448 15 C -0.434 4.434 16 S 0.486 5.514 17 C -0.359 4.359 18 C -0.203 4.203 19 C 0.098 3.902 20 N -0.278 5.278 21 C 0.349 3.651 22 O -0.390 6.390 23 C -0.100 4.100 24 C -0.155 4.155 25 C -0.057 4.057 26 N -0.177 5.177 27 C -0.064 4.064 28 C -0.134 4.134 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.189 0.811 35 H 0.199 0.801 36 H 0.276 0.724 37 H 0.166 0.834 38 H 0.184 0.816 39 H 0.181 0.819 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.916 0.214 18.188 18.421 hybrid contribution 0.512 -0.464 -0.436 0.817 sum 3.427 -0.250 17.751 18.081 Atomic orbital electron populations 1.22084 0.98222 0.99278 1.01000 1.18817 0.91151 0.94035 0.79678 0.93017 1.21241 1.32547 1.13318 0.90247 0.91968 1.24875 0.94732 0.94935 0.99068 1.69901 1.35834 1.22409 1.23872 0.86387 0.78644 0.79569 0.82488 1.19675 1.20819 1.20838 1.46473 1.64224 1.13260 1.10462 1.15639 0.78467 0.86475 0.82342 1.90585 1.53910 1.15548 1.84802 1.23452 1.21589 0.99749 0.98627 1.83043 1.59478 1.04470 1.04401 1.25196 1.07796 1.01889 1.01053 1.20710 1.04448 0.91783 1.03317 1.17115 0.96649 0.84562 0.91904 1.43393 1.65055 1.08915 1.10394 1.18365 0.77626 0.86988 0.82164 1.90581 1.44965 1.57031 1.46426 1.20190 1.01255 0.93428 0.95170 1.22592 0.97245 0.95148 1.00544 1.22848 0.95533 0.93669 0.93628 1.67591 1.11544 1.37749 1.00827 1.22831 0.94712 0.90013 0.98843 1.22307 0.97628 0.97073 0.96350 0.96585 0.95387 0.88972 0.92566 0.77979 0.81143 0.80089 0.72402 0.83434 0.81603 0.81862 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.53 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.20 11.32 55.43 0.63 -23.58 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.70 -14.43 5.06 -57.80 -0.29 -14.72 16 13 C 0.58 11.55 7.56 -14.93 -0.11 11.44 16 14 O -0.56 -12.24 14.14 5.13 0.07 -12.16 16 15 C -0.31 -5.08 6.29 -38.54 -0.24 -5.32 16 16 S 0.22 2.73 22.00 -107.50 -2.36 0.37 16 17 C -0.22 -2.50 10.89 29.09 0.32 -2.18 16 18 C -0.17 -2.31 9.09 -41.24 -0.38 -2.68 16 19 C 0.21 3.26 6.63 -84.70 -0.56 2.70 16 20 N -0.63 -9.27 5.28 -11.25 -0.06 -9.33 16 21 C 0.56 7.59 7.75 -12.21 -0.09 7.50 16 22 O -0.51 -7.49 13.22 5.34 0.07 -7.42 16 23 C -0.09 -1.02 5.91 -104.65 -0.62 -1.64 16 24 C -0.13 -1.43 9.61 -39.02 -0.38 -1.81 16 25 C 0.10 0.99 11.17 -17.59 -0.20 0.79 16 26 N -0.47 -4.93 10.34 -13.31 -0.14 -5.07 16 27 C 0.09 0.82 11.17 -17.60 -0.20 0.62 16 28 C -0.11 -1.08 9.68 -39.02 -0.38 -1.46 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 33 H 0.39 7.13 7.51 -40.82 -0.31 6.82 16 34 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.18 2.49 5.21 -52.55 -0.27 2.21 16 36 H 0.43 6.49 4.41 -40.82 -0.18 6.31 16 37 H 0.15 1.53 6.55 -52.48 -0.34 1.19 16 38 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.15 1.24 7.74 -52.49 -0.41 0.83 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -30.87 355.40 -8.68 -39.56 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -3.87 Total: 13.19 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.06 Total: -1.40 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.14 Total: -52.69 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.14 Total: -19.59 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.36 Total: 0.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.87 -8.68 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.992 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds