Wall clock time and date at job start Wed Apr 1 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47896 * 2 1 4 4 C 1.50707 * 109.47126 * 239.99919 * 2 1 3 5 5 H 1.07999 * 120.00330 * 240.00284 * 4 2 1 6 6 C 1.37875 * 119.99533 * 60.00109 * 4 2 1 7 7 N 1.31517 * 120.00455 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99836 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47196 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47370 * 120.00067 * 8 6 4 11 11 H 1.48502 * 109.47033 * 240.00052 * 8 6 4 12 12 N 1.46504 * 109.47436 * 120.00551 * 2 1 3 13 13 C 1.34783 * 119.99301 * 274.99764 * 12 2 1 14 14 O 1.21764 * 120.00373 * 359.97438 * 13 12 2 15 15 C 1.41713 * 119.99354 * 179.97438 * 13 12 2 16 16 S 1.75810 * 125.48456 * 0.02669 * 15 13 12 17 17 C 1.70557 * 91.69086 * 179.97438 * 16 15 13 18 18 C 1.33542 * 111.20728 * 359.97438 * 17 16 15 19 19 C 1.37456 * 125.47983 * 179.71525 * 15 13 12 20 20 N 1.39449 * 123.50539 * 0.04025 * 19 15 13 21 21 C 1.34776 * 120.00252 * 173.52621 * 20 19 15 22 22 O 1.21530 * 119.99864 * 5.40627 * 21 20 19 23 23 C 1.48105 * 120.00321 * 185.41064 * 21 20 19 24 24 C 1.39834 * 120.92541 * 359.72138 * 23 21 20 25 25 C 1.38136 * 119.00057 * 179.72886 * 24 23 21 26 26 N 1.31821 * 120.89866 * 0.55894 * 25 24 23 27 27 C 1.31815 * 122.04953 * 359.71072 * 26 25 24 28 28 C 1.38138 * 120.90130 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.46689 * 299.99989 * 1 2 3 30 30 H 1.08994 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47036 * 59.99546 * 1 2 3 32 32 H 0.96997 * 120.00403 * 179.97438 * 7 6 4 33 33 H 0.96999 * 120.00381 * 94.99371 * 12 2 1 34 34 H 1.08003 * 124.40087 * 179.97438 * 17 16 15 35 35 H 1.07993 * 122.46218 * 180.02562 * 18 17 16 36 36 H 0.97004 * 120.00309 * 353.52683 * 20 19 15 37 37 H 1.08004 * 120.49989 * 359.97438 * 24 23 21 38 38 H 1.08002 * 119.55414 * 180.25188 * 25 24 23 39 39 H 1.08009 * 119.55270 * 179.97438 * 27 26 25 40 40 H 1.07997 * 120.50382 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8580 1.1632 2.4117 15 6 2.6191 -0.6866 3.5143 16 16 3.0769 -2.3819 3.5983 17 6 3.4715 -2.2456 5.2520 18 6 3.2679 -1.0028 5.6963 19 6 2.7983 -0.1120 4.7500 20 7 2.5304 1.2293 5.0215 21 6 2.6062 1.6892 6.2861 22 8 3.0024 0.9610 7.1747 23 6 2.2063 3.0818 6.5929 24 6 1.7530 3.9381 5.5846 25 6 1.3850 5.2275 5.9163 26 7 1.4672 5.6562 7.1602 27 6 1.8941 4.8840 8.1394 28 6 2.2775 3.5790 7.8981 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 0.7095 1.1619 -3.4843 33 1 2.2490 -1.6319 1.1525 34 1 3.8383 -3.0587 5.8608 35 1 3.4600 -0.7142 6.7191 36 1 2.2896 1.8315 4.3001 37 1 1.6878 3.5952 4.5625 38 1 1.0297 5.8951 5.1453 39 1 1.9457 5.2771 9.1441 40 1 2.6260 2.9518 8.7052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194640797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:51 Heat of formation + Delta-G solvation = -11.894532 kcal Electronic energy + Delta-G solvation = -26629.751414 eV Core-core repulsion = 22728.787009 eV Total energy + Delta-G solvation = -3900.964405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.27252 -41.06600 -40.35054 -38.43794 -36.70334 -35.51121 -34.38626 -33.62313 -32.31757 -31.80384 -29.91386 -27.36078 -26.87796 -25.18983 -24.46269 -23.63440 -22.53625 -21.72773 -20.77605 -19.74079 -19.66138 -18.08164 -17.68894 -17.32211 -16.97386 -16.77223 -16.71625 -16.62599 -16.30548 -15.99133 -15.60814 -15.20869 -15.03465 -14.88372 -14.72063 -14.57848 -14.45644 -14.10789 -13.69100 -13.57025 -12.97946 -12.88439 -12.78123 -12.73638 -12.29412 -12.12730 -12.09097 -11.87677 -11.31984 -11.12160 -11.10728 -10.98813 -10.62499 -10.60389 -10.28224 -10.05584 -9.63916 -9.01494 -8.18440 -6.35464 -0.81303 -0.35245 0.01273 0.42487 0.85259 1.17774 1.44446 1.45996 1.57583 1.69745 1.81321 2.29377 2.35038 2.61520 2.74469 3.12543 3.16345 3.43311 3.66696 3.82511 3.88572 3.97370 4.06475 4.20784 4.46044 4.63750 4.67579 4.71419 4.75109 4.78667 4.91669 4.97471 4.99822 5.08079 5.40062 5.44746 5.52613 5.55937 5.65921 5.86483 6.06680 6.14372 6.64225 6.70699 6.81097 6.82234 7.26377 7.41837 8.88031 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002979 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.102770 B = 9396.989800 C =11439.985749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.582 3.418 14 O -0.595 6.595 15 C -0.360 4.360 16 S 0.269 5.731 17 C -0.187 4.187 18 C -0.194 4.194 19 C 0.211 3.789 20 N -0.637 5.637 21 C 0.561 3.439 22 O -0.524 6.524 23 C -0.105 4.105 24 C -0.143 4.143 25 C 0.097 3.903 26 N -0.483 5.483 27 C 0.099 3.901 28 C -0.109 4.109 29 H 0.014 0.986 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.266 0.734 33 H 0.399 0.601 34 H 0.213 0.787 35 H 0.182 0.818 36 H 0.427 0.573 37 H 0.141 0.859 38 H 0.185 0.815 39 H 0.199 0.801 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -1.719 20.050 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.025 0.975 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.373 3.627 14 O -0.480 6.480 15 C -0.483 4.483 16 S 0.535 5.465 17 C -0.325 4.325 18 C -0.226 4.226 19 C 0.097 3.903 20 N -0.284 5.284 21 C 0.350 3.650 22 O -0.401 6.401 23 C -0.117 4.117 24 C -0.163 4.163 25 C -0.059 4.059 26 N -0.192 5.192 27 C -0.058 4.058 28 C -0.130 4.130 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.230 0.770 35 H 0.199 0.801 36 H 0.271 0.729 37 H 0.159 0.841 38 H 0.202 0.798 39 H 0.216 0.784 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.877 -1.595 19.651 20.094 hybrid contribution 0.246 0.099 -0.735 0.781 sum 4.123 -1.496 18.916 19.418 Atomic orbital electron populations 1.21906 0.98106 0.99468 0.99794 1.18403 0.91190 0.92142 0.81275 0.97486 1.21552 1.32679 1.13607 0.90809 0.91045 1.25748 0.94817 0.95564 1.02159 1.70039 1.36869 1.23787 1.24600 0.85323 0.78133 0.78577 0.78481 1.18417 1.20390 1.20946 1.46179 1.65080 1.13718 1.09774 1.16034 0.77623 0.86230 0.82860 1.90559 1.55050 1.16992 1.85436 1.23177 1.25040 1.02563 0.97566 1.82837 1.58097 1.00866 1.04660 1.25725 1.04056 1.01941 1.00779 1.20703 1.06413 0.92425 1.03067 1.17512 0.95619 0.85007 0.92132 1.43535 1.65099 1.08980 1.10804 1.18679 0.77030 0.87723 0.81558 1.90557 1.45505 1.57605 1.46476 1.20202 1.02570 0.92512 0.96373 1.22586 0.97877 0.95633 1.00247 1.23145 0.95113 0.93521 0.94155 1.67672 1.12047 1.38304 1.01215 1.23399 0.93041 0.89424 0.99926 1.22522 0.97076 0.97622 0.95767 0.96679 0.94307 0.91185 0.92486 0.76622 0.76985 0.80124 0.72913 0.84087 0.79796 0.78401 0.81886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 9.26 71.98 0.67 -6.02 16 2 C 0.27 13.95 2.56 44.25 0.11 14.06 16 3 H 0.01 0.43 7.58 -2.39 -0.02 0.41 16 4 C -0.55 -28.65 8.73 25.60 0.22 -28.43 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.91 -51.34 11.32 21.45 0.24 -51.10 16 8 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 9 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.70 -29.54 5.06 -454.95 -2.30 -31.84 16 13 C 0.58 23.82 7.56 85.10 0.64 24.46 16 14 O -0.59 -27.27 14.14 -4.55 -0.06 -27.34 16 15 C -0.36 -11.79 6.29 22.94 0.14 -11.64 16 16 S 0.27 6.08 22.00 -56.49 -1.24 4.84 16 17 C -0.19 -3.60 10.89 66.75 0.73 -2.87 16 18 C -0.19 -4.96 9.09 21.19 0.19 -4.77 16 19 C 0.21 6.55 6.63 37.73 0.25 6.80 16 20 N -0.64 -19.42 5.28 -307.79 -1.63 -21.05 16 21 C 0.56 15.40 7.75 86.86 0.67 16.07 16 22 O -0.52 -15.09 13.22 -3.81 -0.05 -15.14 16 23 C -0.11 -2.43 5.91 -19.88 -0.12 -2.55 16 24 C -0.14 -3.15 9.61 22.63 0.22 -2.93 16 25 C 0.10 1.89 11.17 84.67 0.95 2.84 16 26 N -0.48 -9.63 10.34 -196.01 -2.03 -11.65 16 27 C 0.10 1.57 11.17 84.67 0.95 2.51 16 28 C -0.11 -1.97 9.68 22.63 0.22 -1.75 16 29 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 32 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 33 H 0.40 14.60 7.51 -92.71 -0.70 13.91 16 34 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.18 4.70 5.21 -3.93 -0.02 4.68 16 36 H 0.43 13.74 4.41 -92.71 -0.41 13.33 16 37 H 0.14 3.23 6.55 -2.91 -0.02 3.21 16 38 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.16 2.43 7.74 -2.91 -0.02 2.41 16 Total: -1.00 -68.53 355.40 1.27 -67.25 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.02 Total: 35.54 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.29 Total: 7.15 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -5.71 Total: -115.64 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.11 Total: -42.48 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.24 Total: 4.84 kcal Total: -68.53 1.27 -67.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.359 kcal (2) G-P(sol) polarization free energy of solvation -68.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds