Wall clock time and date at job start Wed Apr 1 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 O 1.21445 * 120.00149 * 0.02562 * 5 4 2 7 7 C 1.41234 * 119.99672 * 180.02562 * 5 4 2 8 8 C 1.37188 * 125.47530 * 179.97438 * 7 5 4 9 9 C 1.37206 * 113.24146 * 179.97438 * 8 7 5 10 10 C 1.34017 * 115.14432 * 0.02562 * 9 8 7 11 11 S 1.70609 * 111.00331 * 359.72443 * 10 9 8 12 12 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 13 13 S 1.65600 * 119.99622 * 264.99769 * 12 2 1 14 14 O 1.42097 * 104.27643 * 181.07071 * 13 12 2 15 15 O 1.42104 * 104.27787 * 308.92992 * 13 12 2 16 16 C 1.81402 * 104.45117 * 64.99945 * 13 12 2 17 17 C 1.52997 * 109.47210 * 179.97438 * 16 13 12 18 18 C 1.53002 * 109.46971 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46714 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00062 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99853 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00054 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47065 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47365 * 119.99552 * 23 21 19 26 26 H 1.48503 * 109.46776 * 239.99707 * 23 21 19 27 27 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 29 29 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 1.07999 * 123.38239 * 359.97438 * 8 7 5 33 33 H 1.07998 * 122.42504 * 180.02562 * 9 8 7 34 34 H 1.08009 * 124.49732 * 179.97438 * 10 9 8 35 35 H 0.96995 * 119.99892 * 84.99429 * 12 2 1 36 36 H 1.09002 * 109.47005 * 300.00090 * 16 13 12 37 37 H 1.09003 * 109.46554 * 59.99951 * 16 13 12 38 38 H 1.09002 * 109.47224 * 300.00615 * 17 16 13 39 39 H 1.08998 * 109.46678 * 60.00058 * 17 16 13 40 40 H 1.08998 * 109.46988 * 299.99482 * 18 17 16 41 41 H 1.08994 * 109.47083 * 60.00260 * 18 17 16 42 42 H 0.97003 * 120.00499 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 8 4.1459 -0.0204 -0.4429 7 6 4.2470 -1.2068 -2.3839 8 6 5.6081 -1.1787 -2.5532 9 6 6.0268 -1.8352 -3.6829 10 6 5.0496 -2.3835 -4.4181 11 16 3.5222 -2.1042 -3.7110 12 7 2.0184 -0.6907 1.1962 13 16 2.4122 0.1770 2.5505 14 8 2.8606 -0.8031 3.4765 15 8 3.2875 1.1905 2.0751 16 6 0.8408 0.8988 3.0985 17 6 1.0752 1.7339 4.3589 18 6 -0.2503 2.3421 4.8215 19 6 -0.0192 3.1651 6.0626 20 1 0.9736 3.2459 6.4799 21 6 -1.0756 3.8142 6.6659 22 7 -2.2846 3.7154 6.1580 23 14 -0.7891 4.8350 8.2039 24 1 0.6492 4.7857 8.5700 25 1 -1.1866 6.2422 7.9452 26 1 -1.6025 4.2880 9.3195 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7515 -1.7715 -1.2057 31 1 1.6053 -0.2617 -2.1370 32 1 6.2824 -0.6891 -1.8662 33 1 7.0684 -1.9050 -3.9596 34 1 5.2082 -2.9330 -5.3343 35 1 2.1109 -1.6563 1.1948 36 1 0.4388 1.5352 2.3102 37 1 0.1317 0.1008 3.3185 38 1 1.4772 1.0972 5.1471 39 1 1.7846 2.5318 4.1393 40 1 -0.6525 2.9788 4.0335 41 1 -0.9592 1.5439 5.0412 42 1 -3.0278 4.1723 6.5822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270204390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:31 Heat of formation + Delta-G solvation = -91.351512 kcal Electronic energy + Delta-G solvation = -25328.605559 eV Core-core repulsion = 21527.346840 eV Total energy + Delta-G solvation = -3801.258718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.14055 -37.91125 -36.77416 -36.32957 -35.52104 -34.62166 -32.15840 -31.57398 -30.25405 -28.46495 -27.66838 -25.38064 -23.67217 -22.41971 -20.90165 -20.61457 -19.58257 -19.19331 -17.94343 -17.43961 -16.66931 -16.40613 -16.15858 -15.64351 -15.43321 -15.28003 -14.84303 -14.47272 -14.44553 -14.11953 -13.51574 -13.33199 -13.22823 -13.12447 -12.78567 -12.52499 -12.37287 -12.25662 -12.11716 -11.78961 -11.69051 -11.64160 -11.42651 -11.42350 -11.23326 -11.07363 -10.90898 -10.75175 -10.35865 -10.05168 -9.90482 -9.64087 -9.30398 -9.26947 -9.05654 -9.02273 -8.38558 -6.03403 -4.05939 -0.08766 0.62075 1.06272 1.43930 1.83219 2.63527 2.98524 3.31268 3.38655 3.44153 3.74415 4.12381 4.32437 4.45109 4.49904 4.58893 4.77203 4.85243 4.86920 5.02253 5.06365 5.20003 5.21570 5.25105 5.27078 5.33098 5.41978 5.54082 5.59342 5.80103 5.87895 5.91046 6.00698 6.08723 6.33402 6.51499 6.92174 7.01412 7.34142 7.60453 7.70729 7.95202 8.36248 9.00600 9.58622 11.07861 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.029987 B = 0.002098 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.520766 B =13344.726830 C =13778.545225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.156 3.844 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.406 3.594 6 O -0.413 6.413 7 C -0.298 4.298 8 C -0.049 4.049 9 C -0.155 4.155 10 C -0.229 4.229 11 S 0.218 5.782 12 N -1.115 6.115 13 S 2.600 3.400 14 O -0.968 6.968 15 O -0.945 6.945 16 C -0.615 4.615 17 C -0.105 4.105 18 C 0.031 3.969 19 C -0.524 4.524 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.169 0.831 35 H 0.411 0.589 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -15.033 -26.172 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.048 3.952 3 H 0.119 0.881 4 C -0.212 4.212 5 C 0.281 3.719 6 O -0.287 6.287 7 C -0.417 4.417 8 C -0.082 4.082 9 C -0.186 4.186 10 C -0.367 4.367 11 S 0.486 5.514 12 N -0.871 5.871 13 S 2.695 3.305 14 O -0.959 6.959 15 O -0.935 6.935 16 C -0.746 4.746 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.563 4.563 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.186 0.814 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.698 -14.800 -25.745 30.943 hybrid contribution 0.842 0.401 0.780 1.215 sum 9.540 -14.399 -24.966 30.358 Atomic orbital electron populations 1.22503 0.94609 1.03307 1.03639 1.20572 0.93647 0.97317 0.83644 0.88148 1.22409 0.94471 1.03893 1.00418 1.20064 0.91035 0.77648 0.83105 1.90789 1.70982 1.31543 1.35393 1.24325 0.98650 1.13692 1.04984 1.21107 0.93992 0.96258 0.96872 1.20099 1.01182 1.01535 0.95787 1.25511 0.98190 1.07041 1.05914 1.82999 1.06931 1.46864 1.14641 1.55719 1.84345 1.19298 1.27747 1.05357 0.77416 0.74714 0.73017 1.93560 1.80066 1.59442 1.62786 1.93604 1.60981 1.60069 1.78839 1.30712 1.21582 1.12143 1.10144 1.21486 1.03513 0.97720 0.91762 1.19063 0.89875 0.95622 0.96202 1.21312 0.94622 1.29791 1.10533 0.92313 1.25024 0.95149 0.96660 0.97627 1.69967 0.99486 1.43658 1.40380 0.86503 0.78431 0.79941 0.82964 1.19592 1.20960 1.20975 0.91538 0.90987 0.91016 0.87796 0.87200 0.82806 0.83751 0.81371 0.75612 0.85523 0.85448 0.91689 0.91587 0.96141 0.96154 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.48 37.16 0.35 -1.05 16 2 C 0.16 1.51 2.37 -67.93 -0.16 1.35 16 3 H 0.10 1.13 7.29 -51.93 -0.38 0.75 16 4 C -0.17 -1.27 4.59 -27.88 -0.13 -1.40 16 5 C 0.41 4.29 6.80 -33.17 -0.23 4.06 16 6 O -0.41 -6.19 15.17 4.78 0.07 -6.12 16 7 C -0.30 -2.63 6.23 -38.83 -0.24 -2.87 16 8 C -0.05 -0.43 9.95 -40.34 -0.40 -0.83 16 9 C -0.16 -1.01 10.14 -41.44 -0.42 -1.43 16 10 C -0.23 -1.22 10.93 29.25 0.32 -0.90 16 11 S 0.22 1.20 22.42 -107.50 -2.41 -1.21 16 12 N -1.11 -12.90 4.50 -4.89 -0.02 -12.92 16 13 S 2.60 41.80 5.44 -107.50 -0.58 41.21 16 14 O -0.97 -18.46 18.08 -57.54 -1.04 -19.50 16 15 O -0.95 -18.29 16.83 -59.69 -1.00 -19.30 16 16 C -0.61 -9.85 5.22 37.16 0.19 -9.66 16 17 C -0.11 -2.21 5.16 -26.73 -0.14 -2.35 16 18 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 19 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 20 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 23 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.65 5.78 -51.93 -0.30 0.35 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.15 1.38 8.02 -52.49 -0.42 0.96 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.17 0.48 8.06 -52.48 -0.42 0.06 16 35 H 0.41 3.91 8.80 -34.47 -0.30 3.61 16 36 H 0.13 1.79 6.77 -51.92 -0.35 1.44 16 37 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -38.31 379.11 -10.91 -49.22 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.95 Total: 0.31 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -1.40 Total: -28.21 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.71 Total: -38.97 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -1.97 Total: -44.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 43.00 SS G_CDS: -2.99 Total: 40.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.31 -10.91 -49.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270204390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.133 kcal (2) G-P(sol) polarization free energy of solvation -38.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds