Wall clock time and date at job start Wed Apr 1 2020 02:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 O 1.21445 * 120.00149 * 0.02562 * 5 4 2 7 7 C 1.41234 * 119.99672 * 180.02562 * 5 4 2 8 8 C 1.37188 * 125.47530 * 179.97438 * 7 5 4 9 9 C 1.37206 * 113.24146 * 179.97438 * 8 7 5 10 10 C 1.34017 * 115.14432 * 0.02562 * 9 8 7 11 11 S 1.70609 * 111.00331 * 359.72443 * 10 9 8 12 12 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 13 13 S 1.65600 * 119.99622 * 264.99769 * 12 2 1 14 14 O 1.42097 * 104.27643 * 181.07071 * 13 12 2 15 15 O 1.42104 * 104.27787 * 308.92992 * 13 12 2 16 16 C 1.81402 * 104.45117 * 64.99945 * 13 12 2 17 17 C 1.52997 * 109.47210 * 179.97438 * 16 13 12 18 18 C 1.53002 * 109.46971 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46714 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00062 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99853 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00054 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47065 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47365 * 119.99552 * 23 21 19 26 26 H 1.48503 * 109.46776 * 239.99707 * 23 21 19 27 27 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 29 29 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 1.07999 * 123.38239 * 359.97438 * 8 7 5 33 33 H 1.07998 * 122.42504 * 180.02562 * 9 8 7 34 34 H 1.08009 * 124.49732 * 179.97438 * 10 9 8 35 35 H 0.96995 * 119.99892 * 84.99429 * 12 2 1 36 36 H 1.09002 * 109.47005 * 300.00090 * 16 13 12 37 37 H 1.09003 * 109.46554 * 59.99951 * 16 13 12 38 38 H 1.09002 * 109.47224 * 300.00615 * 17 16 13 39 39 H 1.08998 * 109.46678 * 60.00058 * 17 16 13 40 40 H 1.08998 * 109.46988 * 299.99482 * 18 17 16 41 41 H 1.08994 * 109.47083 * 60.00260 * 18 17 16 42 42 H 0.97003 * 120.00499 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 8 4.1459 -0.0204 -0.4429 7 6 4.2470 -1.2068 -2.3839 8 6 5.6081 -1.1787 -2.5532 9 6 6.0268 -1.8352 -3.6829 10 6 5.0496 -2.3835 -4.4181 11 16 3.5222 -2.1042 -3.7110 12 7 2.0184 -0.6907 1.1962 13 16 2.4122 0.1770 2.5505 14 8 2.8606 -0.8031 3.4765 15 8 3.2875 1.1905 2.0751 16 6 0.8408 0.8988 3.0985 17 6 1.0752 1.7339 4.3589 18 6 -0.2503 2.3421 4.8215 19 6 -0.0192 3.1651 6.0626 20 1 0.9736 3.2459 6.4799 21 6 -1.0756 3.8142 6.6659 22 7 -2.2846 3.7154 6.1580 23 14 -0.7891 4.8350 8.2039 24 1 0.6492 4.7857 8.5700 25 1 -1.1866 6.2422 7.9452 26 1 -1.6025 4.2880 9.3195 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7515 -1.7715 -1.2057 31 1 1.6053 -0.2617 -2.1370 32 1 6.2824 -0.6891 -1.8662 33 1 7.0684 -1.9050 -3.9596 34 1 5.2082 -2.9330 -5.3343 35 1 2.1109 -1.6563 1.1948 36 1 0.4388 1.5352 2.3102 37 1 0.1317 0.1008 3.3185 38 1 1.4772 1.0972 5.1471 39 1 1.7846 2.5318 4.1393 40 1 -0.6525 2.9788 4.0335 41 1 -0.9592 1.5439 5.0412 42 1 -3.0278 4.1723 6.5822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270204390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:30 Heat of formation + Delta-G solvation = -118.855459 kcal Electronic energy + Delta-G solvation = -25329.798219 eV Core-core repulsion = 21527.346840 eV Total energy + Delta-G solvation = -3802.451379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89082 -38.50549 -38.10731 -37.23757 -36.94017 -36.47615 -34.17928 -32.33608 -30.97271 -29.74079 -28.87922 -25.98133 -25.56219 -23.12384 -22.38516 -21.58608 -20.43042 -20.14012 -18.86061 -18.57133 -18.39853 -17.49221 -17.13620 -16.78871 -16.54960 -16.41390 -16.12079 -15.80176 -15.54398 -15.06216 -14.54418 -14.28029 -14.19463 -13.95860 -13.78978 -13.70026 -13.55127 -13.29287 -13.13539 -13.06883 -13.04310 -12.97457 -12.81020 -12.76493 -12.60361 -12.36341 -12.12319 -11.96878 -11.82854 -11.75232 -11.37117 -11.13030 -10.80886 -10.58375 -10.34030 -9.85668 -9.48595 -8.23426 -6.34106 -0.69088 -0.67032 0.57737 0.95928 1.25590 1.38758 1.39315 1.52878 1.84880 1.99769 2.39275 2.82699 3.09785 3.11190 3.29674 3.65836 3.75108 3.92138 4.08911 4.16055 4.23567 4.34280 4.37124 4.37999 4.49589 4.63921 4.66264 4.71813 4.73966 4.88750 5.00597 5.04599 5.06739 5.25889 5.29883 5.37198 5.43943 5.46716 5.62585 5.78786 6.17916 6.19657 6.63857 6.80980 7.34891 8.88164 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.029987 B = 0.002098 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.520766 B =13344.726830 C =13778.545225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.169 4.169 5 C 0.404 3.596 6 O -0.476 6.476 7 C -0.339 4.339 8 C -0.065 4.065 9 C -0.171 4.171 10 C -0.221 4.221 11 S 0.285 5.715 12 N -1.100 6.100 13 S 2.621 3.379 14 O -1.001 7.001 15 O -0.982 6.982 16 C -0.608 4.608 17 C -0.107 4.107 18 C 0.033 3.967 19 C -0.553 4.553 20 H 0.057 0.943 21 C 0.003 3.997 22 N -0.928 5.928 23 Si 0.963 3.037 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.199 0.801 35 H 0.423 0.577 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.183 -16.472 -28.366 33.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.040 3.960 3 H 0.097 0.903 4 C -0.207 4.207 5 C 0.284 3.716 6 O -0.354 6.354 7 C -0.457 4.457 8 C -0.100 4.100 9 C -0.201 4.201 10 C -0.359 4.359 11 S 0.553 5.447 12 N -0.861 5.861 13 S 2.716 3.284 14 O -0.992 6.992 15 O -0.971 6.971 16 C -0.739 4.739 17 C -0.146 4.146 18 C -0.005 4.005 19 C -0.591 4.591 20 H 0.076 0.924 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.787 3.213 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.177 0.823 34 H 0.216 0.784 35 H 0.259 0.741 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.704 -16.262 -27.960 33.250 hybrid contribution 1.130 0.771 1.287 1.878 sum 8.834 -15.491 -26.673 32.085 Atomic orbital electron populations 1.22508 0.92546 1.04768 1.04036 1.20815 0.95138 0.96456 0.83607 0.90326 1.22511 0.92156 1.05727 1.00316 1.20687 0.92522 0.76000 0.82433 1.90775 1.72277 1.34584 1.37774 1.24398 0.99094 1.15638 1.06539 1.21206 0.94263 0.96857 0.97628 1.20203 1.02473 1.02043 0.95415 1.25985 0.98021 1.05557 1.06299 1.82674 1.05849 1.44416 1.11776 1.55272 1.84215 1.19701 1.26905 1.04425 0.76851 0.73963 0.73178 1.93505 1.80853 1.60188 1.64608 1.93562 1.62426 1.61591 1.79548 1.30631 1.22407 1.12480 1.08379 1.21313 1.00910 0.98270 0.94078 1.18947 0.91766 0.94755 0.95023 1.21764 0.94817 1.30656 1.11874 0.92438 1.25924 0.94859 0.97800 1.00949 1.70068 1.00310 1.44490 1.41893 0.85429 0.78586 0.78345 0.78897 1.19031 1.20091 1.20081 0.89531 0.92454 0.88812 0.84757 0.83906 0.84775 0.82347 0.78355 0.74133 0.83562 0.83307 0.91906 0.91909 0.97656 0.97655 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.48 71.98 0.68 -1.61 16 2 C 0.15 2.64 2.37 44.99 0.11 2.75 16 3 H 0.08 1.79 7.29 -2.39 -0.02 1.77 16 4 C -0.17 -2.08 4.59 29.85 0.14 -1.94 16 5 C 0.40 8.46 6.80 26.42 0.18 8.63 16 6 O -0.48 -15.09 15.17 -2.94 -0.04 -15.14 16 7 C -0.34 -5.74 6.23 22.76 0.14 -5.59 16 8 C -0.07 -1.17 9.95 21.78 0.22 -0.95 16 9 C -0.17 -2.02 10.14 21.06 0.21 -1.81 16 10 C -0.22 -1.68 10.93 66.86 0.73 -0.95 16 11 S 0.28 2.22 22.42 -56.49 -1.27 0.96 16 12 N -1.10 -24.79 4.50 -169.38 -0.76 -25.55 16 13 S 2.62 85.86 5.44 -56.49 -0.31 85.55 16 14 O -1.00 -38.92 18.08 -127.65 -2.31 -41.23 16 15 O -0.98 -39.65 16.83 -125.59 -2.11 -41.76 16 16 C -0.61 -19.47 5.22 71.98 0.38 -19.10 16 17 C -0.11 -4.58 5.16 30.59 0.16 -4.42 16 18 C 0.03 1.76 4.97 29.85 0.15 1.91 16 19 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 20 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 21 C 0.00 0.17 5.46 84.65 0.46 0.63 16 22 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 23 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.92 5.78 -2.38 -0.01 0.90 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 2.77 8.02 -2.91 -0.02 2.74 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.20 0.26 8.06 -2.91 -0.02 0.24 16 35 H 0.42 7.55 8.80 -96.75 -0.85 6.70 16 36 H 0.15 4.08 6.77 -2.39 -0.02 4.07 16 37 H 0.15 4.10 8.14 -2.39 -0.02 4.08 16 38 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -86.36 379.11 -0.52 -86.88 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.18 Total: 13.38 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 3.79 Total: -54.44 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -0.48 Total: -81.22 kcal Atomic # 8 Polarization: -93.66 SS G_CDS: -4.47 Total: -98.13 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 88.08 SS G_CDS: -1.57 Total: 86.51 kcal Total: -86.36 -0.52 -86.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270204390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.976 kcal (2) G-P(sol) polarization free energy of solvation -86.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds