Wall clock time and date at job start Wed Apr 1 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 O 1.21448 * 120.00138 * 0.02562 * 5 4 2 7 7 C 1.41230 * 120.00098 * 179.97438 * 5 4 2 8 8 C 1.37186 * 125.48220 * 180.02562 * 7 5 4 9 9 C 1.37197 * 113.24508 * 180.02562 * 8 7 5 10 10 C 1.34021 * 115.14532 * 359.97438 * 9 8 7 11 11 S 1.70606 * 111.00088 * 359.72613 * 10 9 8 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 S 1.65605 * 119.99782 * 95.00317 * 12 2 1 14 14 O 1.42103 * 104.27426 * 181.06947 * 13 12 2 15 15 O 1.42099 * 104.27830 * 308.92740 * 13 12 2 16 16 C 1.81404 * 104.44978 * 65.00074 * 13 12 2 17 17 C 1.52995 * 109.46813 * 180.02562 * 16 13 12 18 18 C 1.53005 * 109.46964 * 179.97438 * 17 16 13 19 19 C 1.50695 * 109.47278 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00120 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00153 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99752 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46927 * 59.99989 * 23 21 19 25 25 H 1.48497 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47127 * 300.00112 * 23 21 19 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 31 31 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 32 32 H 1.08004 * 123.37685 * 359.95842 * 8 7 5 33 33 H 1.07998 * 122.42736 * 180.02562 * 9 8 7 34 34 H 1.08003 * 124.50021 * 180.02562 * 10 9 8 35 35 H 0.96993 * 120.00397 * 275.00187 * 12 2 1 36 36 H 1.09001 * 109.46971 * 300.00094 * 16 13 12 37 37 H 1.08998 * 109.47074 * 59.99425 * 16 13 12 38 38 H 1.08997 * 109.47020 * 299.99299 * 17 16 13 39 39 H 1.08991 * 109.47715 * 60.00087 * 17 16 13 40 40 H 1.09001 * 109.46983 * 300.00008 * 18 17 16 41 41 H 1.09004 * 109.46977 * 59.99673 * 18 17 16 42 42 H 0.97000 * 119.99949 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1458 -0.0197 0.4433 7 6 4.2471 -1.2069 2.3837 8 6 5.6082 -1.1789 2.5530 9 6 6.0269 -1.8354 3.6826 10 6 5.0497 -2.3836 4.4179 11 16 3.5211 -2.0913 3.7188 12 7 2.0183 -0.6907 -1.1961 13 16 2.4121 0.1771 -2.5505 14 8 2.8122 -0.8077 -3.4936 15 8 1.2751 0.9966 -2.7846 16 6 3.8314 1.1871 -2.0441 17 6 4.2934 2.0451 -3.2236 18 6 5.4900 2.8974 -2.7963 19 6 5.9456 3.7421 -3.9582 20 1 5.4331 3.6772 -4.9067 21 6 7.0166 4.5978 -3.8104 22 7 7.6409 4.6765 -2.6556 23 14 7.5808 5.6453 -5.2505 24 1 6.4704 6.5316 -5.6828 25 1 8.7415 6.4734 -4.8354 26 1 7.9785 4.7642 -6.3777 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 6.2825 -0.6901 1.8654 33 1 7.0684 -1.9045 3.9598 34 1 5.2083 -2.9331 5.3341 35 1 2.1109 -1.6562 -1.1949 36 1 3.5401 1.8341 -1.2167 37 1 4.6459 0.5360 -1.7268 38 1 4.5846 1.3983 -4.0512 39 1 3.4788 2.6962 -3.5405 40 1 5.1984 3.5442 -1.9688 41 1 6.3049 2.2466 -2.4792 42 1 8.3941 5.2788 -2.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270204392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:34 Heat of formation + Delta-G solvation = -93.177651 kcal Electronic energy + Delta-G solvation = -25826.506484 eV Core-core repulsion = 22025.168578 eV Total energy + Delta-G solvation = -3801.337905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15650 -37.86347 -36.83510 -36.27025 -35.57052 -34.50514 -32.07019 -31.58541 -30.23349 -28.30894 -27.65100 -25.30960 -23.59218 -22.39051 -20.91844 -20.56447 -19.53232 -19.13674 -17.91708 -17.47506 -16.56126 -16.43078 -16.10322 -15.52507 -15.42397 -15.38073 -14.84165 -14.43490 -14.39458 -13.98866 -13.47814 -13.32112 -13.16548 -13.07478 -12.63932 -12.42314 -12.38479 -12.16527 -12.13133 -11.82023 -11.67402 -11.62733 -11.50610 -11.36572 -11.10706 -11.04764 -10.81625 -10.74461 -10.34053 -10.09215 -9.80448 -9.63022 -9.24760 -9.20284 -8.98558 -8.95383 -8.32006 -5.97173 -3.99806 -0.04803 0.68157 1.12016 1.49257 1.86952 2.66259 2.97821 3.37142 3.40399 3.44059 3.75376 4.09068 4.37634 4.49397 4.55309 4.56924 4.77396 4.87692 4.94183 5.09425 5.11565 5.22036 5.28164 5.31151 5.38275 5.45192 5.54809 5.62281 5.66671 5.86301 5.97425 6.01051 6.14025 6.16273 6.43686 6.66768 7.00032 7.03337 7.34059 7.69460 7.81173 8.02185 8.43067 9.06531 9.63966 11.13938 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.003190 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.014039 B = 8776.647727 C =10956.353603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.163 3.837 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.416 3.584 6 O -0.430 6.430 7 C -0.302 4.302 8 C -0.042 4.042 9 C -0.155 4.155 10 C -0.226 4.226 11 S 0.213 5.787 12 N -1.115 6.115 13 S 2.598 3.402 14 O -0.970 6.970 15 O -0.967 6.967 16 C -0.591 4.591 17 C -0.106 4.106 18 C 0.034 3.966 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.411 0.589 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 -17.144 18.993 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.056 3.944 3 H 0.110 0.890 4 C -0.217 4.217 5 C 0.293 3.707 6 O -0.306 6.306 7 C -0.420 4.420 8 C -0.075 4.075 9 C -0.186 4.186 10 C -0.364 4.364 11 S 0.481 5.519 12 N -0.871 5.871 13 S 2.695 3.305 14 O -0.961 6.961 15 O -0.957 6.957 16 C -0.723 4.723 17 C -0.146 4.146 18 C -0.005 4.005 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.186 0.814 35 H 0.244 0.756 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.056 -17.009 18.218 28.136 hybrid contribution 2.566 0.558 -0.172 2.632 sum -10.490 -16.451 18.046 26.577 Atomic orbital electron populations 1.22337 0.94363 1.02762 1.03595 1.20489 0.94395 0.96270 0.83291 0.89019 1.22500 0.94414 1.04110 1.00661 1.20044 0.90860 0.76961 0.82882 1.90692 1.71303 1.32607 1.35961 1.24225 0.98600 1.14310 1.04886 1.21179 0.94041 0.95541 0.96732 1.20136 1.01311 1.01331 0.95829 1.25514 0.98094 1.06849 1.05899 1.82948 1.06901 1.47473 1.14610 1.55715 1.82504 1.18925 1.29980 1.05341 0.76978 0.75102 0.73062 1.93557 1.84721 1.58465 1.59309 1.93549 1.47870 1.70462 1.83775 1.30411 1.18433 1.13717 1.09770 1.21503 1.01900 0.97792 0.93410 1.19018 0.90908 0.93806 0.96729 1.21258 1.14533 1.22805 0.97736 0.92507 1.25017 0.96463 0.97082 0.95824 1.69963 1.21812 1.38059 1.23610 0.86635 0.78146 0.80358 0.82748 1.20170 1.21302 1.20166 0.92099 0.91539 0.90319 0.87113 0.87653 0.82470 0.83634 0.81376 0.75585 0.85647 0.84621 0.91916 0.91905 0.96199 0.96128 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.52 37.16 0.35 -1.11 16 2 C 0.16 1.59 2.24 -67.93 -0.15 1.44 16 3 H 0.09 0.97 6.96 -51.93 -0.36 0.61 16 4 C -0.18 -1.27 4.59 -27.88 -0.13 -1.40 16 5 C 0.42 4.23 6.79 -33.17 -0.23 4.01 16 6 O -0.43 -5.88 12.70 5.41 0.07 -5.82 16 7 C -0.30 -2.76 6.23 -38.83 -0.24 -3.01 16 8 C -0.04 -0.40 9.95 -40.34 -0.40 -0.80 16 9 C -0.16 -1.17 10.14 -41.44 -0.42 -1.59 16 10 C -0.23 -1.37 10.93 29.25 0.32 -1.05 16 11 S 0.21 1.27 22.42 -107.50 -2.41 -1.14 16 12 N -1.11 -12.99 4.50 -4.89 -0.02 -13.01 16 13 S 2.60 42.21 5.38 -107.50 -0.58 41.63 16 14 O -0.97 -18.57 18.08 -57.54 -1.04 -19.61 16 15 O -0.97 -17.80 17.11 -57.54 -0.98 -18.78 16 16 C -0.59 -10.50 4.49 37.15 0.17 -10.34 16 17 C -0.11 -2.34 5.16 -26.73 -0.14 -2.48 16 18 C 0.03 0.91 4.97 -27.88 -0.14 0.77 16 19 C -0.52 -15.37 9.11 -34.44 -0.31 -15.69 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 23 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.87 7.42 -51.93 -0.39 0.48 16 30 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.16 1.63 8.02 -52.48 -0.42 1.21 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.17 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.41 3.93 8.80 -34.47 -0.30 3.63 16 36 H 0.13 2.08 7.22 -51.92 -0.37 1.71 16 37 H 0.14 2.38 6.97 -51.93 -0.36 2.02 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -37.48 376.60 -10.97 -48.45 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.98 Total: 1.73 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -1.42 Total: -29.67 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.71 Total: -39.63 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.96 Total: -44.21 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 43.48 SS G_CDS: -2.99 Total: 40.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.48 -10.97 -48.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270204392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.727 kcal (2) G-P(sol) polarization free energy of solvation -37.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds