Wall clock time and date at job start Wed Apr 1 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 O 1.21448 * 120.00138 * 0.02562 * 5 4 2 7 7 C 1.41230 * 120.00098 * 179.97438 * 5 4 2 8 8 C 1.37186 * 125.48220 * 180.02562 * 7 5 4 9 9 C 1.37197 * 113.24508 * 180.02562 * 8 7 5 10 10 C 1.34021 * 115.14532 * 359.97438 * 9 8 7 11 11 S 1.70606 * 111.00088 * 359.72613 * 10 9 8 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 S 1.65605 * 119.99782 * 95.00317 * 12 2 1 14 14 O 1.42103 * 104.27426 * 181.06947 * 13 12 2 15 15 O 1.42099 * 104.27830 * 308.92740 * 13 12 2 16 16 C 1.81404 * 104.44978 * 65.00074 * 13 12 2 17 17 C 1.52995 * 109.46813 * 180.02562 * 16 13 12 18 18 C 1.53005 * 109.46964 * 179.97438 * 17 16 13 19 19 C 1.50695 * 109.47278 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00120 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00153 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99752 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46927 * 59.99989 * 23 21 19 25 25 H 1.48497 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47127 * 300.00112 * 23 21 19 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 31 31 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 32 32 H 1.08004 * 123.37685 * 359.95842 * 8 7 5 33 33 H 1.07998 * 122.42736 * 180.02562 * 9 8 7 34 34 H 1.08003 * 124.50021 * 180.02562 * 10 9 8 35 35 H 0.96993 * 120.00397 * 275.00187 * 12 2 1 36 36 H 1.09001 * 109.46971 * 300.00094 * 16 13 12 37 37 H 1.08998 * 109.47074 * 59.99425 * 16 13 12 38 38 H 1.08997 * 109.47020 * 299.99299 * 17 16 13 39 39 H 1.08991 * 109.47715 * 60.00087 * 17 16 13 40 40 H 1.09001 * 109.46983 * 300.00008 * 18 17 16 41 41 H 1.09004 * 109.46977 * 59.99673 * 18 17 16 42 42 H 0.97000 * 119.99949 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1458 -0.0197 0.4433 7 6 4.2471 -1.2069 2.3837 8 6 5.6082 -1.1789 2.5530 9 6 6.0269 -1.8354 3.6826 10 6 5.0497 -2.3836 4.4179 11 16 3.5211 -2.0913 3.7188 12 7 2.0183 -0.6907 -1.1961 13 16 2.4121 0.1771 -2.5505 14 8 2.8122 -0.8077 -3.4936 15 8 1.2751 0.9966 -2.7846 16 6 3.8314 1.1871 -2.0441 17 6 4.2934 2.0451 -3.2236 18 6 5.4900 2.8974 -2.7963 19 6 5.9456 3.7421 -3.9582 20 1 5.4331 3.6772 -4.9067 21 6 7.0166 4.5978 -3.8104 22 7 7.6409 4.6765 -2.6556 23 14 7.5808 5.6453 -5.2505 24 1 6.4704 6.5316 -5.6828 25 1 8.7415 6.4734 -4.8354 26 1 7.9785 4.7642 -6.3777 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 6.2825 -0.6901 1.8654 33 1 7.0684 -1.9045 3.9598 34 1 5.2083 -2.9331 5.3341 35 1 2.1109 -1.6562 -1.1949 36 1 3.5401 1.8341 -1.2167 37 1 4.6459 0.5360 -1.7268 38 1 4.5846 1.3983 -4.0512 39 1 3.4788 2.6962 -3.5405 40 1 5.1984 3.5442 -1.9688 41 1 6.3049 2.2466 -2.4792 42 1 8.3941 5.2788 -2.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270204392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:33 Heat of formation + Delta-G solvation = -119.888753 kcal Electronic energy + Delta-G solvation = -25827.664764 eV Core-core repulsion = 22025.168578 eV Total energy + Delta-G solvation = -3802.496186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91012 -38.51643 -38.17583 -37.23552 -36.97868 -36.46756 -34.16939 -32.37211 -30.98833 -29.65454 -28.92959 -25.91886 -25.61158 -23.10209 -22.45820 -21.62281 -20.43695 -20.14992 -18.84792 -18.61027 -18.43643 -17.48133 -17.08957 -16.82611 -16.59565 -16.44752 -16.15226 -15.85897 -15.49568 -15.07401 -14.50961 -14.29179 -14.14489 -13.95318 -13.78788 -13.70615 -13.55160 -13.38528 -13.19009 -13.11326 -13.04637 -12.96540 -12.80232 -12.73374 -12.63113 -12.42859 -12.16018 -11.96209 -11.84763 -11.72000 -11.40798 -11.18255 -10.82006 -10.59101 -10.34806 -9.85308 -9.47004 -8.23300 -6.35749 -0.68062 -0.67320 0.58611 0.95173 1.24261 1.37808 1.41863 1.49721 1.80004 1.99319 2.38706 2.74710 3.09087 3.09569 3.25770 3.65548 3.83322 3.94347 4.06663 4.13109 4.22264 4.35447 4.36353 4.40468 4.49002 4.64420 4.66570 4.70879 4.75223 4.99637 5.03857 5.05777 5.06981 5.25755 5.29173 5.37852 5.42826 5.47904 5.59833 5.77420 6.15769 6.17562 6.62182 6.79444 7.33372 8.88293 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.003190 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.014039 B = 8776.647727 C =10956.353603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.151 3.849 3 H 0.078 0.922 4 C -0.170 4.170 5 C 0.412 3.588 6 O -0.481 6.481 7 C -0.337 4.337 8 C -0.065 4.065 9 C -0.175 4.175 10 C -0.220 4.220 11 S 0.290 5.710 12 N -1.099 6.099 13 S 2.632 3.368 14 O -0.998 6.998 15 O -0.985 6.985 16 C -0.593 4.593 17 C -0.106 4.106 18 C 0.037 3.963 19 C -0.555 4.555 20 H 0.062 0.938 21 C 0.001 3.999 22 N -0.931 5.931 23 Si 0.968 3.032 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.267 1.267 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.199 0.801 35 H 0.424 0.576 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.067 0.933 40 H -0.002 1.002 41 H -0.005 1.005 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 -18.532 20.558 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.044 3.956 3 H 0.096 0.904 4 C -0.208 4.208 5 C 0.292 3.708 6 O -0.361 6.361 7 C -0.455 4.455 8 C -0.100 4.100 9 C -0.205 4.205 10 C -0.358 4.358 11 S 0.558 5.442 12 N -0.860 5.860 13 S 2.726 3.274 14 O -0.988 6.988 15 O -0.974 6.974 16 C -0.724 4.724 17 C -0.145 4.145 18 C -0.001 4.001 19 C -0.593 4.593 20 H 0.080 0.920 21 C -0.197 4.197 22 N -0.571 5.571 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.192 1.192 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.172 0.828 34 H 0.216 0.784 35 H 0.260 0.740 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.964 -18.408 19.799 30.899 hybrid contribution 3.121 0.902 -0.470 3.283 sum -11.843 -17.506 19.329 28.641 Atomic orbital electron populations 1.22319 0.92812 1.04087 1.03543 1.20787 0.95542 0.95915 0.83335 0.90403 1.22561 0.91979 1.05921 1.00380 1.20630 0.92315 0.75604 0.82250 1.90679 1.72459 1.35027 1.37897 1.24365 0.98803 1.15805 1.06499 1.21196 0.94530 0.96678 0.97553 1.20199 1.02442 1.02169 0.95686 1.25972 0.98109 1.05421 1.06286 1.82582 1.05390 1.44727 1.11474 1.55296 1.81739 1.19345 1.29639 1.04122 0.75643 0.74300 0.73298 1.93511 1.84990 1.59009 1.61315 1.93527 1.47962 1.71376 1.84574 1.30388 1.19913 1.13808 1.08243 1.21330 1.00144 0.97896 0.95106 1.18880 0.92072 0.93548 0.95610 1.21719 1.15293 1.23698 0.98559 0.92006 1.26012 0.96376 0.98373 0.98960 1.70098 1.22267 1.38816 1.25875 0.85465 0.77974 0.78513 0.78910 1.19019 1.20426 1.19153 0.90088 0.88902 0.93090 0.83812 0.84583 0.85108 0.82796 0.78396 0.73973 0.84965 0.84879 0.91887 0.91422 0.98369 0.98689 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.52 71.98 0.69 -1.75 16 2 C 0.15 2.70 2.24 44.99 0.10 2.80 16 3 H 0.08 1.63 6.96 -2.39 -0.02 1.61 16 4 C -0.17 -1.96 4.59 29.85 0.14 -1.82 16 5 C 0.41 8.21 6.79 26.42 0.18 8.39 16 6 O -0.48 -13.93 12.70 -3.55 -0.05 -13.97 16 7 C -0.34 -5.94 6.23 22.76 0.14 -5.80 16 8 C -0.07 -1.33 9.95 21.78 0.22 -1.11 16 9 C -0.17 -2.55 10.14 21.06 0.21 -2.34 16 10 C -0.22 -2.08 10.93 66.86 0.73 -1.35 16 11 S 0.29 2.48 22.42 -56.49 -1.27 1.22 16 12 N -1.10 -24.65 4.50 -169.38 -0.76 -25.41 16 13 S 2.63 86.44 5.38 -56.49 -0.30 86.13 16 14 O -1.00 -38.48 18.08 -127.65 -2.31 -40.79 16 15 O -0.98 -36.31 17.11 -127.65 -2.18 -38.50 16 16 C -0.59 -22.20 4.49 71.98 0.32 -21.87 16 17 C -0.11 -4.86 5.16 30.59 0.16 -4.70 16 18 C 0.04 2.11 4.97 29.85 0.15 2.26 16 19 C -0.55 -33.51 9.11 25.60 0.23 -33.28 16 20 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 21 C 0.00 0.05 5.46 84.66 0.46 0.51 16 22 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 23 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 1.05 7.42 -2.39 -0.02 1.03 16 30 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 3.20 8.02 -2.91 -0.02 3.17 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.42 7.44 8.80 -96.75 -0.85 6.59 16 36 H 0.13 4.68 7.22 -2.39 -0.02 4.66 16 37 H 0.13 5.04 6.97 -2.39 -0.02 5.02 16 38 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -84.63 376.60 -0.65 -85.28 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.18 Total: 16.36 kcal Atomic # 6 Polarization: -63.79 SS G_CDS: 3.73 Total: -60.06 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -0.48 Total: -83.65 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -4.54 Total: -93.26 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 88.92 SS G_CDS: -1.57 Total: 87.35 kcal Total: -84.63 -0.65 -85.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270204392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.613 kcal (2) G-P(sol) polarization free energy of solvation -84.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds