Wall clock time and date at job start Wed Apr 1 2020 02:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 N 1.46496 * 109.47227 * 240.00125 * 2 1 3 5 5 S 1.65602 * 120.00060 * 95.00089 * 4 2 1 6 6 O 1.42098 * 104.28005 * 181.07395 * 5 4 2 7 7 O 1.42101 * 104.27771 * 308.92962 * 5 4 2 8 8 C 1.81401 * 104.45064 * 64.99908 * 5 4 2 9 9 C 1.52994 * 109.46947 * 179.97438 * 8 5 4 10 10 C 1.50705 * 109.46939 * 179.97438 * 9 8 5 11 11 H 1.07999 * 120.00059 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00168 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00030 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00488 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47235 * 89.99841 * 14 12 10 16 16 H 1.48493 * 109.47447 * 210.00441 * 14 12 10 17 17 H 1.48506 * 109.46625 * 330.00414 * 14 12 10 18 18 C 1.50701 * 109.47189 * 120.00148 * 2 1 3 19 19 C 1.38235 * 119.99808 * 260.00012 * 18 2 1 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 2 21 21 C 1.38232 * 120.00069 * 0.09581 * 20 19 18 22 22 S 1.76204 * 119.99908 * 179.97438 * 21 20 19 23 23 C 1.81399 * 102.99807 * 269.91087 * 22 21 20 24 24 O 1.42097 * 102.99886 * 156.05655 * 22 21 20 25 25 C 1.38234 * 119.99866 * 359.86117 * 21 20 19 26 26 C 1.38230 * 119.99865 * 79.97758 * 18 2 1 27 27 H 1.09009 * 109.47058 * 299.99994 * 1 2 3 28 28 H 1.09005 * 109.47340 * 59.99653 * 1 2 3 29 29 H 1.08996 * 109.47501 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00063 * 275.00189 * 4 2 1 31 31 H 1.08995 * 109.46890 * 300.00414 * 8 5 4 32 32 H 1.09003 * 109.46598 * 60.00321 * 8 5 4 33 33 H 1.08995 * 109.47731 * 299.99981 * 9 8 5 34 34 H 1.08998 * 109.47567 * 60.00770 * 9 8 5 35 35 H 0.96999 * 120.00139 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00616 * 359.70324 * 19 18 2 37 37 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47731 * 59.99888 * 23 22 21 39 39 H 1.09003 * 109.47021 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.47166 * 299.99904 * 23 22 21 41 41 H 1.08000 * 119.99729 * 180.02562 * 25 21 20 42 42 H 1.08001 * 120.00371 * 0.02562 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 2.4122 0.1773 -2.5504 6 8 2.8122 -0.8074 -3.4936 7 8 1.2751 0.9967 -2.7846 8 6 3.8313 1.1873 -2.0440 9 6 4.2941 2.0444 -3.2238 10 6 5.4727 2.8841 -2.8029 11 1 5.8538 2.8131 -1.7948 12 6 6.0652 3.7420 -3.7049 13 7 5.6015 3.8282 -4.9327 14 14 7.5265 4.7823 -3.1835 15 1 8.7836 4.0365 -3.4454 16 1 7.5327 6.0501 -3.9566 17 1 7.4248 5.0871 -1.7336 18 6 2.0323 -0.7104 1.2304 19 6 2.4587 0.0194 2.3242 20 6 2.9190 -0.6324 3.4532 21 6 2.9548 -2.0138 3.4874 22 16 3.5421 -2.8445 4.9261 23 6 5.3191 -3.0130 4.6030 24 8 2.9211 -4.1193 4.8350 25 6 2.5275 -2.7435 2.3939 26 6 2.0663 -2.0919 1.2654 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.1109 -1.6561 -1.1949 31 1 3.5399 1.8342 -1.2166 32 1 4.6459 0.5362 -1.7268 33 1 4.5856 1.3972 -4.0509 34 1 3.4798 2.6956 -3.5415 35 1 6.0186 4.4315 -5.5674 36 1 2.4363 1.0988 2.2953 37 1 3.2525 -0.0621 4.3076 38 1 5.7615 -2.0245 4.4801 39 1 5.7942 -3.5223 5.4415 40 1 5.4695 -3.5940 3.6930 41 1 2.5551 -3.8229 2.4208 42 1 1.7332 -2.6621 0.4108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270217810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:25 Heat of formation + Delta-G solvation = -95.275508 kcal Electronic energy + Delta-G solvation = -25447.605377 eV Core-core repulsion = 21646.176501 eV Total energy + Delta-G solvation = -3801.428875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.85111 -36.76424 -36.22582 -36.01807 -35.46660 -33.93874 -31.51357 -31.21246 -31.10068 -29.35365 -28.98928 -25.65791 -24.23371 -23.15096 -21.70271 -21.26952 -19.05858 -18.47160 -17.70828 -17.19674 -16.54604 -16.32682 -15.58872 -15.44485 -15.16957 -15.16124 -14.77546 -14.57049 -14.29248 -13.94920 -13.91901 -13.63165 -13.42403 -13.26972 -12.95583 -12.64196 -12.55568 -12.30325 -12.05707 -11.83165 -11.74520 -11.64617 -11.56454 -11.37906 -11.14934 -11.09072 -10.98286 -10.57636 -10.45919 -10.41585 -9.92304 -9.63340 -9.34620 -9.24558 -9.08578 -8.72220 -8.53941 -6.15977 -4.21864 0.53079 0.74668 1.08990 1.54283 2.33620 3.03044 3.23127 3.29427 3.31658 3.33142 3.59633 4.13735 4.31618 4.37609 4.45983 4.65566 4.66880 4.82033 4.86035 4.91684 5.04180 5.08051 5.19072 5.19488 5.27471 5.49474 5.59169 5.62020 5.64604 5.68846 5.70218 5.87110 5.94924 5.96000 6.16868 6.30313 6.43311 6.61333 6.97623 7.25761 7.31774 7.76681 8.13383 8.81485 9.43084 10.95066 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.002847 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.607287 B = 9832.821125 C =11489.918495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.187 3.813 3 H 0.098 0.902 4 N -1.123 6.123 5 S 2.591 3.409 6 O -0.966 6.966 7 O -0.962 6.962 8 C -0.589 4.589 9 C 0.028 3.972 10 C -0.521 4.521 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.047 4.047 19 C -0.128 4.128 20 C -0.040 4.040 21 C -0.465 4.465 22 S 1.331 4.669 23 C -0.498 4.498 24 O -0.860 6.860 25 C -0.050 4.050 26 C -0.124 4.124 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.411 0.589 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -8.831 22.826 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.079 3.921 3 H 0.116 0.884 4 N -0.879 5.879 5 S 2.688 3.312 6 O -0.957 6.957 7 O -0.952 6.952 8 C -0.723 4.723 9 C -0.011 4.011 10 C -0.560 4.560 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.049 4.049 19 C -0.148 4.148 20 C -0.060 4.060 21 C -0.562 4.562 22 S 1.528 4.472 23 C -0.655 4.655 24 O -0.856 6.856 25 C -0.069 4.069 26 C -0.144 4.144 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.144 0.856 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.745 -8.953 22.585 25.214 hybrid contribution 1.807 -0.764 -1.407 2.414 sum -4.938 -9.717 21.178 23.819 Atomic orbital electron populations 1.22317 0.93539 1.02996 1.03663 1.19706 0.95062 0.95405 0.81907 0.88415 1.56054 1.82725 1.19356 1.29810 1.05668 0.77274 0.75113 0.73126 1.93558 1.84670 1.58598 1.58826 1.93546 1.47953 1.70250 1.83481 1.30451 1.16847 1.13355 1.11611 1.18962 0.98244 0.94216 0.89652 1.20991 1.14022 1.23035 0.97984 0.92052 1.25072 0.97525 0.96993 0.94892 1.69954 1.41059 1.37639 1.04160 0.86465 0.82454 0.79689 0.78654 1.20477 1.20977 1.19732 1.20253 0.95432 0.94070 0.95159 1.21208 0.99848 1.00479 0.93215 1.20825 0.95168 0.92186 0.97780 1.27624 1.12551 1.02378 1.13632 1.69410 0.84036 0.95620 0.98124 1.27762 1.21439 1.08357 1.07900 1.93104 1.69037 1.41397 1.82051 1.21072 0.93986 0.99980 0.91907 1.21019 1.00875 0.94046 0.98460 0.91401 0.89961 0.92085 0.75444 0.86386 0.86113 0.94863 0.94757 0.92490 0.84751 0.84362 0.86909 0.87679 0.89927 0.85592 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.49 37.16 0.35 -1.39 16 2 C 0.19 2.06 2.88 -69.09 -0.20 1.86 16 3 H 0.10 1.00 7.01 -51.93 -0.36 0.63 16 4 N -1.12 -14.28 5.31 -5.88 -0.03 -14.31 16 5 S 2.59 45.01 5.38 -107.50 -0.58 44.43 16 6 O -0.97 -19.94 18.08 -57.54 -1.04 -20.98 16 7 O -0.96 -19.03 17.11 -57.54 -0.98 -20.01 16 8 C -0.59 -10.92 5.90 37.15 0.22 -10.70 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 14 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 18 C -0.05 -0.48 4.95 -104.63 -0.52 -1.00 16 19 C -0.13 -1.07 9.67 -39.58 -0.38 -1.45 16 20 C -0.04 -0.27 9.75 -39.58 -0.39 -0.66 16 21 C -0.47 -3.89 5.61 -39.58 -0.22 -4.11 16 22 S 1.33 8.05 14.19 -107.50 -1.53 6.52 16 23 C -0.50 -2.83 10.70 101.05 1.08 -1.75 16 24 O -0.86 -11.01 16.90 -35.23 -0.60 -11.60 16 25 C -0.05 -0.54 9.44 -39.58 -0.37 -0.91 16 26 C -0.12 -1.30 9.16 -39.59 -0.36 -1.66 16 27 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.08 1.00 7.43 -51.93 -0.39 0.62 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.41 4.57 7.04 -34.47 -0.24 4.33 16 31 H 0.12 1.90 7.44 -51.93 -0.39 1.51 16 32 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.13 0.86 8.04 -52.49 -0.42 0.44 16 37 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 38 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 40 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.13 1.44 7.46 -52.49 -0.39 1.05 16 42 H 0.13 1.17 6.82 -52.49 -0.36 0.81 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -40.60 378.70 -10.57 -51.17 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.90 Total: 2.87 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: -1.34 Total: -34.14 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.71 Total: -39.79 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -2.62 Total: -52.59 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -2.10 Total: 50.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -40.60 -10.57 -51.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270217810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.107 kcal (2) G-P(sol) polarization free energy of solvation -40.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds