Wall clock time and date at job start Wed Apr 1 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 N 1.46496 * 109.47227 * 240.00125 * 2 1 3 5 5 S 1.65602 * 120.00060 * 95.00089 * 4 2 1 6 6 O 1.42098 * 104.28005 * 181.07395 * 5 4 2 7 7 O 1.42101 * 104.27771 * 308.92962 * 5 4 2 8 8 C 1.81401 * 104.45064 * 64.99908 * 5 4 2 9 9 C 1.52994 * 109.46947 * 179.97438 * 8 5 4 10 10 C 1.50705 * 109.46939 * 179.97438 * 9 8 5 11 11 H 1.07999 * 120.00059 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00168 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00030 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00488 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47235 * 89.99841 * 14 12 10 16 16 H 1.48493 * 109.47447 * 210.00441 * 14 12 10 17 17 H 1.48506 * 109.46625 * 330.00414 * 14 12 10 18 18 C 1.50701 * 109.47189 * 120.00148 * 2 1 3 19 19 C 1.38235 * 119.99808 * 260.00012 * 18 2 1 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 2 21 21 C 1.38232 * 120.00069 * 0.09581 * 20 19 18 22 22 S 1.76204 * 119.99908 * 179.97438 * 21 20 19 23 23 C 1.81399 * 102.99807 * 269.91087 * 22 21 20 24 24 O 1.42097 * 102.99886 * 156.05655 * 22 21 20 25 25 C 1.38234 * 119.99866 * 359.86117 * 21 20 19 26 26 C 1.38230 * 119.99865 * 79.97758 * 18 2 1 27 27 H 1.09009 * 109.47058 * 299.99994 * 1 2 3 28 28 H 1.09005 * 109.47340 * 59.99653 * 1 2 3 29 29 H 1.08996 * 109.47501 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00063 * 275.00189 * 4 2 1 31 31 H 1.08995 * 109.46890 * 300.00414 * 8 5 4 32 32 H 1.09003 * 109.46598 * 60.00321 * 8 5 4 33 33 H 1.08995 * 109.47731 * 299.99981 * 9 8 5 34 34 H 1.08998 * 109.47567 * 60.00770 * 9 8 5 35 35 H 0.96999 * 120.00139 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00616 * 359.70324 * 19 18 2 37 37 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47731 * 59.99888 * 23 22 21 39 39 H 1.09003 * 109.47021 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.47166 * 299.99904 * 23 22 21 41 41 H 1.08000 * 119.99729 * 180.02562 * 25 21 20 42 42 H 1.08001 * 120.00371 * 0.02562 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 2.4122 0.1773 -2.5504 6 8 2.8122 -0.8074 -3.4936 7 8 1.2751 0.9967 -2.7846 8 6 3.8313 1.1873 -2.0440 9 6 4.2941 2.0444 -3.2238 10 6 5.4727 2.8841 -2.8029 11 1 5.8538 2.8131 -1.7948 12 6 6.0652 3.7420 -3.7049 13 7 5.6015 3.8282 -4.9327 14 14 7.5265 4.7823 -3.1835 15 1 8.7836 4.0365 -3.4454 16 1 7.5327 6.0501 -3.9566 17 1 7.4248 5.0871 -1.7336 18 6 2.0323 -0.7104 1.2304 19 6 2.4587 0.0194 2.3242 20 6 2.9190 -0.6324 3.4532 21 6 2.9548 -2.0138 3.4874 22 16 3.5421 -2.8445 4.9261 23 6 5.3191 -3.0130 4.6030 24 8 2.9211 -4.1193 4.8350 25 6 2.5275 -2.7435 2.3939 26 6 2.0663 -2.0919 1.2654 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.1109 -1.6561 -1.1949 31 1 3.5399 1.8342 -1.2166 32 1 4.6459 0.5362 -1.7268 33 1 4.5856 1.3972 -4.0509 34 1 3.4798 2.6956 -3.5415 35 1 6.0186 4.4315 -5.5674 36 1 2.4363 1.0988 2.2953 37 1 3.2525 -0.0621 4.3076 38 1 5.7615 -2.0245 4.4801 39 1 5.7942 -3.5223 5.4415 40 1 5.4695 -3.5940 3.6930 41 1 2.5551 -3.8229 2.4208 42 1 1.7332 -2.6621 0.4108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270217810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:24 Heat of formation + Delta-G solvation = -127.080903 kcal Electronic energy + Delta-G solvation = -25448.984562 eV Core-core repulsion = 21646.176501 eV Total energy + Delta-G solvation = -3802.808061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55979 -38.22633 -37.23121 -36.97392 -36.82877 -35.89686 -33.13579 -32.31241 -31.81666 -30.10538 -29.53634 -27.60289 -25.00344 -23.93142 -23.49175 -22.06996 -20.34246 -19.29301 -19.00021 -18.46217 -17.90161 -17.22311 -17.03948 -16.53590 -16.43465 -16.29134 -15.77635 -15.62085 -15.18206 -14.97248 -14.75197 -14.54147 -14.45291 -14.24641 -13.88108 -13.84055 -13.73432 -13.36444 -13.21721 -13.17217 -13.09304 -12.93292 -12.81586 -12.79139 -12.62878 -12.26592 -12.18480 -12.09512 -11.92682 -11.74813 -11.33116 -11.18668 -10.64274 -10.56578 -10.02787 -9.90138 -9.33438 -8.25294 -6.39477 -0.72978 -0.09033 0.42758 1.00075 1.42399 1.44131 1.55273 1.75889 1.84625 2.38993 2.64859 2.77637 3.01481 3.08550 3.23271 3.51429 3.77077 3.94721 4.02092 4.07625 4.15485 4.25893 4.32246 4.33885 4.48654 4.50980 4.62730 4.74724 4.83162 4.86788 5.00153 5.09542 5.19648 5.25360 5.26566 5.28412 5.31135 5.34717 5.57677 5.68941 5.97166 5.99124 6.06443 6.74527 7.31018 8.87058 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.002847 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.607287 B = 9832.821125 C =11489.918495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.179 3.821 3 H 0.111 0.889 4 N -1.107 6.107 5 S 2.617 3.383 6 O -1.003 7.003 7 O -0.987 6.987 8 C -0.586 4.586 9 C 0.020 3.980 10 C -0.537 4.537 11 H 0.079 0.921 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.974 3.026 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.253 1.253 18 C -0.058 4.058 19 C -0.131 4.131 20 C -0.029 4.029 21 C -0.473 4.473 22 S 1.403 4.597 23 C -0.499 4.499 24 O -0.930 6.930 25 C -0.079 4.079 26 C -0.139 4.139 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.420 0.580 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.002 0.998 34 H 0.010 0.990 35 H 0.267 0.733 36 H 0.161 0.839 37 H 0.191 0.809 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.057 0.943 41 H 0.104 0.896 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -7.283 26.378 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.073 3.927 3 H 0.129 0.871 4 N -0.867 5.867 5 S 2.714 3.286 6 O -0.993 6.993 7 O -0.977 6.977 8 C -0.718 4.718 9 C -0.019 4.019 10 C -0.576 4.576 11 H 0.097 0.903 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.798 3.202 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.176 1.176 18 C -0.059 4.059 19 C -0.151 4.151 20 C -0.048 4.048 21 C -0.570 4.570 22 S 1.601 4.399 23 C -0.657 4.657 24 O -0.926 6.926 25 C -0.098 4.098 26 C -0.159 4.159 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.257 0.743 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.021 0.979 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.178 0.822 37 H 0.208 0.792 38 H 0.159 0.841 39 H 0.138 0.862 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.436 -7.416 26.146 27.716 hybrid contribution 1.389 -1.279 -2.437 3.083 sum -4.046 -8.695 23.709 25.575 Atomic orbital electron populations 1.22316 0.93261 1.03186 1.03771 1.19981 0.95435 0.95986 0.81333 0.87110 1.55607 1.82152 1.19563 1.29419 1.04606 0.76368 0.74358 0.73271 1.93503 1.85078 1.59630 1.61121 1.93514 1.48723 1.71157 1.84324 1.30323 1.18102 1.13534 1.09842 1.18820 0.97373 0.94268 0.91394 1.21521 1.14399 1.22933 0.98754 0.90327 1.26137 1.00816 0.98577 0.94803 1.70109 1.42977 1.38827 1.05653 0.85308 0.78290 0.77488 0.79161 1.19897 1.20998 1.17622 1.20181 0.96641 0.93695 0.95418 1.21632 0.98749 1.01852 0.92835 1.21419 0.93101 0.91447 0.98815 1.27925 1.12173 1.03544 1.13312 1.68549 0.83042 0.92559 0.95766 1.27789 1.20792 1.09850 1.07284 1.92977 1.71580 1.44848 1.83226 1.21066 0.96024 0.99326 0.93364 1.21057 1.01627 0.94641 0.98539 0.89076 0.91991 0.91948 0.74332 0.83368 0.84249 0.97936 0.97212 0.92443 0.82185 0.79172 0.84124 0.86190 0.92404 0.87751 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 9.49 71.98 0.68 -2.57 16 2 C 0.18 3.60 2.88 44.25 0.13 3.73 16 3 H 0.11 1.93 7.01 -2.39 -0.02 1.91 16 4 N -1.11 -27.25 5.31 -172.53 -0.92 -28.17 16 5 S 2.62 91.12 5.38 -56.49 -0.30 90.81 16 6 O -1.00 -42.36 18.08 -127.65 -2.31 -44.67 16 7 O -0.99 -39.42 17.11 -127.65 -2.18 -41.60 16 8 C -0.59 -21.11 5.90 71.98 0.42 -20.69 16 9 C 0.02 1.04 4.98 29.85 0.15 1.19 16 10 C -0.54 -28.93 9.11 25.60 0.23 -28.69 16 11 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 12 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 13 N -0.94 -56.36 13.29 21.45 0.28 -56.08 16 14 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 18 C -0.06 -1.03 4.95 -19.87 -0.10 -1.13 16 19 C -0.13 -1.66 9.67 22.27 0.22 -1.44 16 20 C -0.03 -0.27 9.75 22.27 0.22 -0.05 16 21 C -0.47 -6.88 5.61 22.27 0.12 -6.75 16 22 S 1.40 14.20 14.19 -56.49 -0.80 13.40 16 23 C -0.50 -4.40 10.70 113.37 1.21 -3.18 16 24 O -0.93 -23.84 16.90 -148.98 -2.52 -26.36 16 25 C -0.08 -1.67 9.44 22.27 0.21 -1.46 16 26 C -0.14 -2.83 9.16 22.27 0.20 -2.63 16 27 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.06 1.48 7.43 -2.38 -0.02 1.46 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.42 9.19 7.04 -96.75 -0.68 8.51 16 31 H 0.15 4.38 7.44 -2.39 -0.02 4.36 16 32 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 33 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 36 H 0.16 1.19 8.04 -2.91 -0.02 1.17 16 37 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 38 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 2.58 7.46 -2.91 -0.02 2.56 16 42 H 0.12 2.36 6.82 -2.91 -0.02 2.35 16 Total: -1.00 -91.76 378.70 -2.20 -93.97 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.35 Total: 18.06 kcal Atomic # 6 Polarization: -67.66 SS G_CDS: 4.17 Total: -63.49 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -0.63 Total: -84.24 kcal Atomic # 8 Polarization: -105.62 SS G_CDS: -7.01 Total: -112.63 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 105.32 SS G_CDS: -1.11 Total: 104.21 kcal Total: -91.76 -2.20 -93.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270217810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.113 kcal (2) G-P(sol) polarization free energy of solvation -91.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds