Wall clock time and date at job start Wed Apr 1 2020 02:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47138 * 2 1 4 4 N 1.46495 * 109.47636 * 240.00300 * 2 1 3 5 5 S 1.65601 * 120.00285 * 94.99720 * 4 2 1 6 6 O 1.42102 * 104.27444 * 181.07691 * 5 4 2 7 7 O 1.42104 * 104.27685 * 308.92951 * 5 4 2 8 8 C 1.81395 * 104.44689 * 65.00482 * 5 4 2 9 9 C 1.53001 * 109.47006 * 180.02562 * 8 5 4 10 10 C 1.50698 * 109.47402 * 179.97438 * 9 8 5 11 11 H 1.08001 * 119.99768 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00207 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00170 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99924 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46770 * 60.00315 * 14 12 10 16 16 H 1.48496 * 109.46940 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47217 * 300.00718 * 14 12 10 18 18 C 1.52997 * 109.47255 * 119.99801 * 2 1 3 19 19 H 1.09002 * 109.72362 * 300.57359 * 18 2 1 20 20 O 1.43026 * 109.68861 * 61.12867 * 18 2 1 21 21 C 1.43042 * 114.23559 * 171.81580 * 20 18 2 22 22 C 1.53432 * 109.08964 * 288.73152 * 21 20 18 23 23 C 1.51408 * 107.90605 * 47.42201 * 22 21 20 24 24 S 1.75516 * 126.27368 * 164.55556 * 23 22 21 25 25 C 1.75809 * 91.03344 * 179.97438 * 24 23 22 26 26 C 1.33064 * 109.61770 * 0.02562 * 25 24 23 27 27 C 1.34870 * 123.68107 * 344.54138 * 23 22 21 28 28 H 1.08998 * 109.47388 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47789 * 300.00130 * 1 2 3 30 30 H 1.09006 * 109.46967 * 59.99892 * 1 2 3 31 31 H 0.97009 * 119.99746 * 275.00498 * 4 2 1 32 32 H 1.09001 * 109.47206 * 299.99948 * 8 5 4 33 33 H 1.08995 * 109.47559 * 60.00079 * 8 5 4 34 34 H 1.09001 * 109.46816 * 299.99845 * 9 8 5 35 35 H 1.08995 * 109.47176 * 59.99503 * 9 8 5 36 36 H 0.96999 * 120.00529 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.53341 * 48.61514 * 21 20 18 38 38 H 1.09004 * 109.53812 * 168.84867 * 21 20 18 39 39 H 1.09000 * 109.77533 * 167.02491 * 22 21 20 40 40 H 1.09006 * 109.77002 * 287.76990 * 22 21 20 41 41 H 1.08001 * 125.18520 * 180.02562 * 25 24 23 42 42 H 1.08000 * 122.18559 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 16 2.4122 0.1773 -2.5504 6 8 2.8123 -0.8075 -3.4935 7 8 1.2751 0.9967 -2.7846 8 6 3.8313 1.1873 -2.0439 9 6 4.2934 2.0454 -3.2233 10 6 5.4720 2.8850 -2.8025 11 1 5.8535 2.8134 -1.7946 12 6 6.0638 3.7438 -3.7043 13 7 5.5995 3.8306 -4.9316 14 14 7.5243 4.7850 -3.1823 15 1 8.6343 3.8988 -2.7492 16 1 7.9728 5.6177 -4.3270 17 1 7.1262 5.6664 -2.0554 18 6 2.0400 -0.7212 1.2492 19 1 1.6705 -0.2165 2.1420 20 8 1.5876 -2.0780 1.2408 21 6 2.1584 -2.8937 2.2679 22 6 3.6346 -3.1534 1.9401 23 6 4.2687 -1.8298 1.5679 24 16 5.9885 -1.4917 1.4759 25 6 5.6686 0.1718 1.0052 26 6 4.3549 0.3745 0.9458 27 6 3.5627 -0.7242 1.2544 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 2.1110 -1.6562 -1.1949 32 1 3.5400 1.8343 -1.2165 33 1 4.6459 0.5363 -1.7266 34 1 4.5847 1.3987 -4.0510 35 1 3.4787 2.6964 -3.5403 36 1 6.0161 4.4345 -5.5662 37 1 2.0828 -2.3793 3.2260 38 1 1.6240 -3.8424 2.3191 39 1 4.1380 -3.5712 2.8119 40 1 3.7098 -3.8475 1.1030 41 1 6.4234 0.9155 0.7962 42 1 3.9320 1.3305 0.6745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291919968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:40 Heat of formation + Delta-G solvation = -94.063151 kcal Electronic energy + Delta-G solvation = -27248.079050 eV Core-core repulsion = 23446.702747 eV Total energy + Delta-G solvation = -3801.376304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24995 -36.67932 -36.62185 -35.95677 -35.33671 -33.88475 -32.41658 -31.15635 -30.29627 -28.88126 -26.06031 -25.54859 -24.20424 -22.03154 -21.61456 -21.53438 -18.95363 -18.58135 -17.77569 -17.31878 -16.89891 -16.54349 -15.85360 -15.34733 -15.20581 -15.02336 -14.82528 -14.56551 -14.49768 -13.72602 -13.52112 -13.45643 -13.33322 -12.88000 -12.54478 -12.49807 -12.10757 -12.04218 -11.92448 -11.69811 -11.53531 -11.46090 -11.42830 -11.24256 -11.06852 -10.93822 -10.89449 -10.81360 -10.40193 -10.35024 -9.85305 -9.78559 -9.46522 -8.98637 -8.60702 -8.49782 -8.41528 -6.11882 -4.17227 0.86808 0.91285 1.54525 1.93260 2.56856 3.18287 3.25382 3.30844 3.31891 3.45478 4.28290 4.37371 4.40287 4.45656 4.59172 4.75095 4.78780 4.90592 5.02503 5.09317 5.11736 5.23320 5.24705 5.37057 5.40331 5.50400 5.53930 5.62916 5.73802 5.78633 5.91479 6.03374 6.19475 6.25118 6.34865 6.39586 6.51725 6.88885 7.27037 7.31887 7.38975 7.80406 8.18439 8.85501 9.47070 10.99214 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.004508 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.575499 B = 6209.525334 C = 7855.014935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.169 3.831 3 H 0.095 0.905 4 N -1.112 6.112 5 S 2.589 3.411 6 O -0.968 6.968 7 O -0.966 6.966 8 C -0.590 4.590 9 C 0.031 3.969 10 C -0.517 4.517 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.151 3.849 19 H 0.084 0.916 20 O -0.365 6.365 21 C 0.068 3.932 22 C -0.081 4.081 23 C -0.184 4.184 24 S 0.101 5.899 25 C -0.198 4.198 26 C -0.127 4.127 27 C -0.133 4.133 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.417 0.583 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.171 0.829 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -12.464 18.635 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.060 3.940 3 H 0.113 0.887 4 N -0.870 5.870 5 S 2.686 3.314 6 O -0.959 6.959 7 O -0.956 6.956 8 C -0.723 4.723 9 C -0.008 4.008 10 C -0.556 4.556 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.090 3.910 19 H 0.102 0.898 20 O -0.283 6.283 21 C -0.011 4.011 22 C -0.120 4.120 23 C -0.301 4.301 24 S 0.368 5.632 25 C -0.333 4.333 26 C -0.157 4.157 27 C -0.147 4.147 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.188 0.812 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.799 -13.152 17.721 22.584 hybrid contribution 0.567 1.374 0.635 1.616 sum -4.232 -11.778 18.356 22.216 Atomic orbital electron populations 1.22269 0.94091 1.03369 1.03037 1.20705 0.95206 0.94944 0.83125 0.88725 1.55685 1.82306 1.19621 1.29339 1.05633 0.77247 0.75144 0.73348 1.93548 1.84683 1.58503 1.59155 1.93541 1.47936 1.70442 1.83693 1.30559 1.17144 1.13256 1.11375 1.18930 0.98117 0.94112 0.89675 1.20923 1.13992 1.22879 0.97844 0.92180 1.25048 0.97425 0.97005 0.94904 1.69938 1.41139 1.37577 1.04161 0.86576 0.82567 0.80225 0.78158 1.20171 1.21091 1.20125 1.21358 0.87446 0.83867 0.98332 0.89817 1.87969 1.66387 1.20384 1.53606 1.22629 0.92086 0.95630 0.90731 1.20950 0.96044 0.92574 1.02434 1.24656 0.96245 0.99430 1.09792 1.84097 1.04304 1.07197 1.67651 1.25532 1.00125 0.99125 1.08532 1.19980 0.92744 0.99984 1.02947 1.20073 0.96927 0.93278 1.04390 0.91278 0.91918 0.90509 0.74877 0.86642 0.86024 0.94996 0.94917 0.92500 0.92611 0.87996 0.89730 0.89324 0.81188 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.38 37.15 0.35 -1.52 16 2 C 0.17 1.96 2.24 -67.94 -0.15 1.81 16 3 H 0.09 1.03 6.29 -51.93 -0.33 0.71 16 4 N -1.11 -15.47 4.94 -4.90 -0.02 -15.49 16 5 S 2.59 47.73 5.38 -107.50 -0.58 47.15 16 6 O -0.97 -21.07 18.08 -57.54 -1.04 -22.11 16 7 O -0.97 -20.06 17.11 -57.54 -0.98 -21.05 16 8 C -0.59 -11.22 4.91 37.16 0.18 -11.03 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 10 C -0.52 -13.93 9.11 -34.44 -0.31 -14.24 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 14 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.15 1.53 2.77 -27.10 -0.08 1.46 16 19 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 20 O -0.37 -3.64 9.21 -35.23 -0.32 -3.96 16 21 C 0.07 0.50 6.83 37.38 0.26 0.75 16 22 C -0.08 -0.65 6.55 -27.31 -0.18 -0.83 16 23 C -0.18 -1.98 6.44 -35.16 -0.23 -2.21 16 24 S 0.10 1.13 23.32 -107.50 -2.51 -1.38 16 25 C -0.20 -2.45 11.21 28.93 0.32 -2.13 16 26 C -0.13 -1.55 7.83 -41.13 -0.32 -1.87 16 27 C -0.13 -1.51 5.06 -104.78 -0.53 -2.04 16 28 H 0.07 0.75 7.72 -51.93 -0.40 0.35 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 31 H 0.42 5.47 8.33 -34.47 -0.29 5.18 16 32 H 0.12 1.89 6.04 -51.92 -0.31 1.58 16 33 H 0.12 2.18 7.50 -51.93 -0.39 1.79 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.14 1.66 5.94 -52.49 -0.31 1.35 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -34.65 363.38 -10.95 -45.60 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.76 Total: 5.10 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -0.92 Total: -29.66 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.71 Total: -41.07 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -2.35 Total: -47.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 48.86 SS G_CDS: -3.09 Total: 45.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.65 -10.95 -45.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291919968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.462 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds