Wall clock time and date at job start Wed Apr 1 2020 02:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47000 * 2 1 4 4 N 1.46495 * 109.46999 * 119.99579 * 2 1 3 5 5 S 1.65593 * 120.00440 * 265.00142 * 4 2 1 6 6 O 1.42103 * 104.27715 * 308.92780 * 5 4 2 7 7 O 1.42102 * 104.28044 * 181.07223 * 5 4 2 8 8 C 1.81400 * 104.45124 * 64.99959 * 5 4 2 9 9 C 1.52999 * 109.47542 * 180.02562 * 8 5 4 10 10 C 1.50695 * 109.47057 * 180.02562 * 9 8 5 11 11 H 1.07999 * 120.00538 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99661 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.52996 * 109.47408 * 239.99901 * 2 1 3 19 19 H 1.09000 * 109.68651 * 65.53742 * 18 2 1 20 20 O 1.43025 * 109.69125 * 305.00337 * 18 2 1 21 21 C 1.43033 * 114.24752 * 188.22233 * 20 18 2 22 22 C 1.53437 * 109.08182 * 71.26214 * 21 20 18 23 23 C 1.51406 * 107.89932 * 312.53217 * 22 21 20 24 24 S 1.75515 * 126.27164 * 195.55645 * 23 22 21 25 25 C 1.75813 * 91.03190 * 179.97438 * 24 23 22 26 26 C 1.33068 * 109.61588 * 0.02562 * 25 24 23 27 27 C 1.34873 * 123.68091 * 15.52359 * 23 22 21 28 28 H 1.09000 * 109.46711 * 60.00257 * 1 2 3 29 29 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47024 * 300.00054 * 1 2 3 31 31 H 0.97007 * 119.99714 * 85.00152 * 4 2 1 32 32 H 1.09002 * 109.47255 * 60.00089 * 8 5 4 33 33 H 1.08998 * 109.46820 * 300.00304 * 8 5 4 34 34 H 1.09002 * 109.46997 * 59.99657 * 9 8 5 35 35 H 1.09000 * 109.46625 * 300.00082 * 9 8 5 36 36 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 37 37 H 1.09006 * 109.53490 * 191.13660 * 21 20 18 38 38 H 1.08998 * 109.53991 * 311.29437 * 21 20 18 39 39 H 1.08998 * 109.77619 * 72.13818 * 22 21 20 40 40 H 1.09006 * 109.77093 * 192.88384 * 22 21 20 41 41 H 1.08001 * 125.19017 * 180.02562 * 25 24 23 42 42 H 1.08002 * 122.18269 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.4121 0.1772 2.5505 6 8 3.2874 1.1907 2.0751 7 8 2.8605 -0.8028 3.4766 8 6 0.8407 0.8990 3.0985 9 6 1.0752 1.7352 4.3581 10 6 -0.2304 2.3342 4.8136 11 1 -1.1367 2.1386 4.2599 12 6 -0.2678 3.1321 5.9375 13 7 0.8358 3.3700 6.6122 14 14 -1.8860 3.8753 6.5018 15 1 -2.5565 2.9440 7.4444 16 1 -2.7625 4.1047 5.3251 17 1 -1.6257 5.1682 7.1845 18 6 2.0401 -0.7212 -1.2492 19 1 1.7618 -0.1562 -2.1388 20 8 1.4725 -2.0324 -1.3141 21 6 2.0237 -2.8609 -2.3415 22 6 3.4528 -3.2603 -1.9510 23 6 4.1785 -2.0104 -1.4999 24 16 5.9141 -1.8275 -1.3135 25 6 5.7149 -0.1584 -0.7982 26 6 4.4220 0.1563 -0.7933 27 6 3.5552 -0.8579 -1.1801 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.1109 -1.6561 1.1949 32 1 0.1314 0.1011 3.3185 33 1 0.4387 1.5353 2.3101 34 1 1.7843 2.5331 4.1378 35 1 1.4775 1.0991 5.1466 36 1 1.6760 2.9838 6.3193 37 1 1.4129 -3.7567 -2.4544 38 1 2.0418 -2.3112 -3.2826 39 1 3.4239 -3.9842 -1.1367 40 1 3.9628 -3.6935 -2.8115 41 1 6.5192 0.5095 -0.5271 42 1 4.0696 1.1365 -0.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291919971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:43 Heat of formation + Delta-G solvation = -98.210490 kcal Electronic energy + Delta-G solvation = -26809.218483 eV Core-core repulsion = 23007.662337 eV Total energy + Delta-G solvation = -3801.556146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29954 -36.73580 -36.67579 -36.07886 -35.45835 -34.24949 -32.49222 -31.05484 -30.31402 -28.95960 -26.12584 -25.04143 -24.25186 -22.02174 -21.94924 -21.57859 -19.15623 -18.62960 -17.82690 -17.45875 -16.98982 -16.69772 -16.00446 -15.75090 -15.21393 -15.13446 -14.90271 -14.52999 -13.81491 -13.79088 -13.65889 -13.52494 -13.47593 -12.97043 -12.82531 -12.58195 -12.24371 -12.11608 -12.04561 -11.97325 -11.63524 -11.58883 -11.47846 -11.25204 -11.04109 -10.99206 -10.90325 -10.48049 -10.45419 -10.30397 -10.09969 -9.90924 -9.39675 -8.68398 -8.64339 -8.47630 -8.44847 -6.46726 -4.19355 0.75153 0.84283 1.47563 1.85494 2.54523 3.08896 3.39109 3.40189 3.42477 3.58259 4.21907 4.32838 4.39458 4.47737 4.50769 4.65826 4.73867 4.84919 4.96359 5.03961 5.10736 5.14730 5.27745 5.29255 5.37166 5.41496 5.50363 5.52884 5.63871 5.66532 5.77307 5.98307 6.08654 6.20014 6.22996 6.33856 6.40565 6.83819 6.98076 7.07075 7.18864 7.97692 8.31323 8.73777 9.53024 10.93160 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.003072 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.742449 B = 9111.727018 C = 9899.370652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.162 3.838 3 H 0.104 0.896 4 N -1.112 6.112 5 S 2.590 3.410 6 O -0.965 6.965 7 O -0.968 6.968 8 C -0.586 4.586 9 C 0.015 3.985 10 C -0.599 4.599 11 H 0.056 0.944 12 C 0.015 3.985 13 N -0.906 5.906 14 Si 1.076 2.924 15 H -0.286 1.286 16 H -0.287 1.287 17 H -0.282 1.282 18 C 0.155 3.845 19 H 0.085 0.915 20 O -0.365 6.365 21 C 0.067 3.933 22 C -0.081 4.081 23 C -0.183 4.183 24 S 0.092 5.908 25 C -0.210 4.210 26 C -0.110 4.110 27 C -0.131 4.131 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.417 0.583 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.270 0.730 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.166 0.834 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -11.951 -22.589 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.053 3.947 3 H 0.122 0.878 4 N -0.869 5.869 5 S 2.687 3.313 6 O -0.955 6.955 7 O -0.959 6.959 8 C -0.719 4.719 9 C -0.024 4.024 10 C -0.638 4.638 11 H 0.074 0.926 12 C -0.189 4.189 13 N -0.542 5.542 14 Si 0.903 3.097 15 H -0.213 1.213 16 H -0.214 1.214 17 H -0.208 1.208 18 C 0.093 3.907 19 H 0.102 0.898 20 O -0.284 6.284 21 C -0.011 4.011 22 C -0.120 4.120 23 C -0.301 4.301 24 S 0.358 5.642 25 C -0.345 4.345 26 C -0.139 4.139 27 C -0.144 4.144 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.251 0.749 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.184 0.816 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.415 -11.729 -21.163 24.794 hybrid contribution -0.713 -0.344 -1.180 1.421 sum 4.702 -12.073 -22.343 25.828 Atomic orbital electron populations 1.22402 0.94257 1.03948 1.03020 1.20800 0.94658 0.95843 0.83359 0.87841 1.55651 1.84083 1.19937 1.27247 1.05579 0.78139 0.74495 0.73043 1.93525 1.62232 1.60301 1.79417 1.93553 1.80505 1.59297 1.62527 1.30466 1.19419 1.11592 1.10458 1.19062 1.00012 0.94137 0.89172 1.21866 0.93393 1.34194 1.14381 0.92610 1.25971 1.04236 0.95159 0.93556 1.70754 0.99853 1.43132 1.40435 0.83450 0.73704 0.76720 0.75809 1.21275 1.21352 1.20800 1.21274 0.86546 0.84803 0.98071 0.89757 1.87980 1.61242 1.24044 1.55117 1.22630 0.92852 0.95119 0.90504 1.20957 0.95556 0.93543 1.01954 1.24666 0.96375 0.99432 1.09590 1.84004 1.03930 1.09777 1.66488 1.25425 1.00733 0.98484 1.09884 1.20017 0.92000 1.01126 1.00800 1.20066 0.96987 0.93486 1.03867 0.91375 0.90658 0.91233 0.74913 0.85929 0.86044 0.95804 0.95905 0.91911 0.87922 0.92565 0.89347 0.89671 0.81635 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.28 37.16 0.35 -1.45 16 2 C 0.16 1.83 2.35 -67.94 -0.16 1.67 16 3 H 0.10 1.16 6.90 -51.93 -0.36 0.80 16 4 N -1.11 -15.09 4.76 -4.90 -0.02 -15.11 16 5 S 2.59 46.62 5.44 -107.50 -0.58 46.03 16 6 O -0.96 -19.05 17.30 -57.54 -1.00 -20.05 16 7 O -0.97 -20.77 18.08 -57.54 -1.04 -21.81 16 8 C -0.59 -11.28 5.16 37.16 0.19 -11.09 16 9 C 0.02 0.38 4.29 -27.89 -0.12 0.27 16 10 C -0.60 -16.75 9.11 -34.44 -0.31 -17.07 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 13 N -0.91 -27.78 13.65 55.43 0.76 -27.02 16 14 Si 1.08 24.89 29.90 -169.99 -5.08 19.81 16 15 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 C 0.15 1.57 2.83 -27.10 -0.08 1.49 16 19 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 20 O -0.37 -3.56 9.22 -35.23 -0.32 -3.89 16 21 C 0.07 0.48 6.83 37.38 0.26 0.74 16 22 C -0.08 -0.64 6.55 -27.31 -0.18 -0.81 16 23 C -0.18 -1.97 6.44 -35.16 -0.23 -2.19 16 24 S 0.09 0.98 23.32 -107.50 -2.51 -1.53 16 25 C -0.21 -2.51 11.21 28.94 0.32 -2.19 16 26 C -0.11 -1.39 9.49 -41.13 -0.39 -1.78 16 27 C -0.13 -1.51 4.88 -104.78 -0.51 -2.02 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.76 7.57 -51.93 -0.39 0.37 16 30 H 0.07 0.77 5.78 -51.93 -0.30 0.47 16 31 H 0.42 5.37 8.55 -34.47 -0.29 5.08 16 32 H 0.12 2.18 8.14 -51.92 -0.42 1.76 16 33 H 0.12 2.07 6.77 -51.93 -0.35 1.72 16 34 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 35 H 0.02 0.61 8.01 -51.93 -0.42 0.20 16 36 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.15 1.92 7.44 -52.49 -0.39 1.53 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -35.70 365.89 -11.04 -46.74 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.80 Total: 5.40 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: -0.96 Total: -34.10 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.73 Total: -42.13 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -2.36 Total: -45.74 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Atomic # 16 Polarization: 47.60 SS G_CDS: -3.09 Total: 44.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.70 -11.04 -46.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291919971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.467 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds