Wall clock time and date at job start Wed Apr 1 2020 02:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47000 * 2 1 4 4 N 1.46495 * 109.46999 * 119.99579 * 2 1 3 5 5 S 1.65593 * 120.00440 * 265.00142 * 4 2 1 6 6 O 1.42103 * 104.27715 * 308.92780 * 5 4 2 7 7 O 1.42102 * 104.28044 * 181.07223 * 5 4 2 8 8 C 1.81400 * 104.45124 * 64.99959 * 5 4 2 9 9 C 1.52999 * 109.47542 * 180.02562 * 8 5 4 10 10 C 1.50695 * 109.47057 * 180.02562 * 9 8 5 11 11 H 1.07999 * 120.00538 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99661 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.52996 * 109.47408 * 239.99901 * 2 1 3 19 19 H 1.09000 * 109.68651 * 65.53742 * 18 2 1 20 20 O 1.43025 * 109.69125 * 305.00337 * 18 2 1 21 21 C 1.43033 * 114.24752 * 188.22233 * 20 18 2 22 22 C 1.53437 * 109.08182 * 71.26214 * 21 20 18 23 23 C 1.51406 * 107.89932 * 312.53217 * 22 21 20 24 24 S 1.75515 * 126.27164 * 195.55645 * 23 22 21 25 25 C 1.75813 * 91.03190 * 179.97438 * 24 23 22 26 26 C 1.33068 * 109.61588 * 0.02562 * 25 24 23 27 27 C 1.34873 * 123.68091 * 15.52359 * 23 22 21 28 28 H 1.09000 * 109.46711 * 60.00257 * 1 2 3 29 29 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47024 * 300.00054 * 1 2 3 31 31 H 0.97007 * 119.99714 * 85.00152 * 4 2 1 32 32 H 1.09002 * 109.47255 * 60.00089 * 8 5 4 33 33 H 1.08998 * 109.46820 * 300.00304 * 8 5 4 34 34 H 1.09002 * 109.46997 * 59.99657 * 9 8 5 35 35 H 1.09000 * 109.46625 * 300.00082 * 9 8 5 36 36 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 37 37 H 1.09006 * 109.53490 * 191.13660 * 21 20 18 38 38 H 1.08998 * 109.53991 * 311.29437 * 21 20 18 39 39 H 1.08998 * 109.77619 * 72.13818 * 22 21 20 40 40 H 1.09006 * 109.77093 * 192.88384 * 22 21 20 41 41 H 1.08001 * 125.19017 * 180.02562 * 25 24 23 42 42 H 1.08002 * 122.18269 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.4121 0.1772 2.5505 6 8 3.2874 1.1907 2.0751 7 8 2.8605 -0.8028 3.4766 8 6 0.8407 0.8990 3.0985 9 6 1.0752 1.7352 4.3581 10 6 -0.2304 2.3342 4.8136 11 1 -1.1367 2.1386 4.2599 12 6 -0.2678 3.1321 5.9375 13 7 0.8358 3.3700 6.6122 14 14 -1.8860 3.8753 6.5018 15 1 -2.5565 2.9440 7.4444 16 1 -2.7625 4.1047 5.3251 17 1 -1.6257 5.1682 7.1845 18 6 2.0401 -0.7212 -1.2492 19 1 1.7618 -0.1562 -2.1388 20 8 1.4725 -2.0324 -1.3141 21 6 2.0237 -2.8609 -2.3415 22 6 3.4528 -3.2603 -1.9510 23 6 4.1785 -2.0104 -1.4999 24 16 5.9141 -1.8275 -1.3135 25 6 5.7149 -0.1584 -0.7982 26 6 4.4220 0.1563 -0.7933 27 6 3.5552 -0.8579 -1.1801 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.1109 -1.6561 1.1949 32 1 0.1314 0.1011 3.3185 33 1 0.4387 1.5353 2.3101 34 1 1.7843 2.5331 4.1378 35 1 1.4775 1.0991 5.1466 36 1 1.6760 2.9838 6.3193 37 1 1.4129 -3.7567 -2.4544 38 1 2.0418 -2.3112 -3.2826 39 1 3.4239 -3.9842 -1.1367 40 1 3.9628 -3.6935 -2.8115 41 1 6.5192 0.5095 -0.5271 42 1 4.0696 1.1365 -0.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291919971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:42 Heat of formation + Delta-G solvation = -123.959779 kcal Electronic energy + Delta-G solvation = -26810.335056 eV Core-core repulsion = 23007.662337 eV Total energy + Delta-G solvation = -3802.672719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05972 -38.24839 -37.49467 -37.15440 -36.96153 -36.29994 -33.22170 -33.00441 -31.28183 -29.77456 -27.18233 -26.75193 -25.00191 -23.93401 -22.73401 -22.52475 -20.50713 -19.46199 -19.39085 -18.62706 -18.23159 -17.84146 -17.32507 -17.11256 -16.36184 -16.03609 -15.65987 -15.63360 -15.51733 -15.21797 -14.91833 -14.54865 -14.42091 -14.35596 -14.10852 -13.75886 -13.34779 -13.25957 -13.19262 -13.12685 -12.99541 -12.83501 -12.81662 -12.46764 -12.40106 -12.30100 -12.06572 -11.96787 -11.88758 -11.79384 -11.60462 -10.83742 -10.62381 -10.59394 -10.39001 -9.52719 -9.31602 -8.74837 -6.48769 -0.74864 -0.01268 0.65403 0.99161 1.53611 1.62955 1.64620 1.78328 1.80528 2.54847 2.72035 2.74545 3.09849 3.19795 3.58128 3.64354 3.74146 3.84949 3.97853 4.10765 4.20860 4.24742 4.26869 4.36573 4.42276 4.50810 4.51780 4.62751 4.78840 4.86221 4.91272 4.99006 5.01676 5.06993 5.11641 5.24130 5.34336 5.46495 5.50855 5.81623 6.08143 6.08947 6.19286 6.44935 7.34305 8.64783 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.003072 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.742449 B = 9111.727018 C = 9899.370652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.152 3.848 3 H 0.103 0.897 4 N -1.095 6.095 5 S 2.616 3.384 6 O -0.984 6.984 7 O -1.005 7.005 8 C -0.585 4.585 9 C 0.005 3.995 10 C -0.611 4.611 11 H 0.069 0.931 12 C -0.043 4.043 13 N -0.937 5.937 14 Si 1.125 2.875 15 H -0.272 1.272 16 H -0.260 1.260 17 H -0.284 1.284 18 C 0.161 3.839 19 H 0.108 0.892 20 O -0.376 6.376 21 C 0.064 3.936 22 C -0.082 4.082 23 C -0.186 4.186 24 S 0.104 5.896 25 C -0.232 4.232 26 C -0.126 4.126 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.423 0.577 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.005 0.995 35 H -0.002 1.002 36 H 0.254 0.746 37 H 0.126 0.874 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.172 0.828 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -13.104 -24.893 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.044 3.956 3 H 0.120 0.880 4 N -0.855 5.855 5 S 2.712 3.288 6 O -0.974 6.974 7 O -0.996 6.996 8 C -0.716 4.716 9 C -0.034 4.034 10 C -0.650 4.650 11 H 0.087 0.913 12 C -0.240 4.240 13 N -0.574 5.574 14 Si 0.944 3.056 15 H -0.197 1.197 16 H -0.185 1.185 17 H -0.210 1.210 18 C 0.099 3.901 19 H 0.126 0.874 20 O -0.295 6.295 21 C -0.014 4.014 22 C -0.121 4.121 23 C -0.303 4.303 24 S 0.370 5.630 25 C -0.367 4.367 26 C -0.156 4.156 27 C -0.161 4.161 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.259 0.741 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.023 0.977 35 H 0.016 0.984 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.189 0.811 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.368 -12.900 -23.486 27.006 hybrid contribution -0.001 -0.064 -0.576 0.580 sum 3.367 -12.964 -24.062 27.539 Atomic orbital electron populations 1.22389 0.92847 1.04388 1.03716 1.21110 0.95758 0.95883 0.82800 0.87952 1.55212 1.83949 1.19947 1.26423 1.04557 0.77278 0.73823 0.73158 1.93500 1.62743 1.61337 1.79802 1.93497 1.81120 1.60311 1.64625 1.30403 1.21199 1.11754 1.08276 1.18978 0.98775 0.94136 0.91465 1.22345 0.94650 1.33626 1.14350 0.91296 1.27657 1.06767 0.95564 0.94004 1.70898 1.00099 1.44722 1.41645 0.82861 0.70040 0.76009 0.76653 1.19720 1.18466 1.20973 1.21235 0.85437 0.85480 0.97915 0.87435 1.87962 1.61323 1.23924 1.56248 1.22867 0.92500 0.95756 0.90257 1.21119 0.96013 0.92206 1.02745 1.25133 0.96305 1.00297 1.08585 1.83906 1.04458 1.08582 1.66030 1.25666 1.00993 0.99696 1.10348 1.20126 0.92636 1.01273 1.01543 1.20226 0.97856 0.93456 1.04527 0.88984 0.90329 0.92217 0.74098 0.84250 0.83627 0.97708 0.98360 0.93643 0.85593 0.91309 0.89306 0.87575 0.81056 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.28 71.98 0.67 -2.37 16 2 C 0.15 3.15 2.35 44.99 0.11 3.26 16 3 H 0.10 2.17 6.90 -2.39 -0.02 2.15 16 4 N -1.09 -28.49 4.76 -169.40 -0.81 -29.29 16 5 S 2.62 94.72 5.44 -56.49 -0.31 94.41 16 6 O -0.98 -39.58 17.30 -127.65 -2.21 -41.79 16 7 O -1.01 -43.90 18.08 -127.65 -2.31 -46.21 16 8 C -0.58 -22.29 5.16 71.98 0.37 -21.92 16 9 C 0.01 0.27 4.29 29.85 0.13 0.40 16 10 C -0.61 -34.23 9.11 25.60 0.23 -33.99 16 11 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 12 C -0.04 -2.46 5.46 84.65 0.46 -1.99 16 13 N -0.94 -58.95 13.65 21.45 0.29 -58.66 16 14 Si 1.12 49.25 29.90 68.60 2.05 51.31 16 15 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C 0.16 2.87 2.83 30.36 0.09 2.95 16 19 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 20 O -0.38 -6.15 9.22 -148.98 -1.37 -7.52 16 21 C 0.06 0.69 6.83 72.13 0.49 1.18 16 22 C -0.08 -1.05 6.55 30.22 0.20 -0.85 16 23 C -0.19 -3.66 6.44 25.14 0.16 -3.49 16 24 S 0.10 2.13 23.32 -56.49 -1.32 0.81 16 25 C -0.23 -5.58 11.21 66.66 0.75 -4.83 16 26 C -0.13 -3.18 9.49 21.27 0.20 -2.98 16 27 C -0.15 -3.21 4.88 -19.97 -0.10 -3.31 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.34 7.57 -2.39 -0.02 1.32 16 30 H 0.06 1.16 5.78 -2.39 -0.01 1.15 16 31 H 0.42 10.34 8.55 -96.74 -0.83 9.51 16 32 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 33 H 0.15 4.77 6.77 -2.39 -0.02 4.76 16 34 H 0.00 0.26 8.01 -2.39 -0.02 0.24 16 35 H 0.00 -0.10 8.01 -2.39 -0.02 -0.12 16 36 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 37 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 42 H 0.14 3.66 7.44 -2.91 -0.02 3.63 16 Total: -1.00 -78.40 365.89 -1.90 -80.30 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.32 Total: 24.60 kcal Atomic # 6 Polarization: -71.71 SS G_CDS: 3.76 Total: -67.95 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -0.51 Total: -87.95 kcal Atomic # 8 Polarization: -89.63 SS G_CDS: -5.89 Total: -95.52 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.05 Total: 51.31 kcal Atomic # 16 Polarization: 96.84 SS G_CDS: -1.62 Total: 95.22 kcal Total: -78.40 -1.90 -80.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291919971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.657 kcal (2) G-P(sol) polarization free energy of solvation -78.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds