Wall clock time and date at job start Wed Apr 1 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36562 * 119.72290 * 2 1 4 4 S 1.76194 * 118.47831 * 0.02562 * 3 2 1 5 5 N 1.31032 * 123.04527 * 179.32440 * 3 2 1 6 6 C 1.35399 * 121.55338 * 1.00311 * 5 3 2 7 7 C 1.39721 * 121.46940 * 179.05654 * 6 5 3 8 8 C 1.38973 * 119.43518 * 180.02562 * 7 6 5 9 9 C 1.47894 * 119.75994 * 179.97438 * 8 7 6 10 10 O 1.21577 * 120.00096 * 318.48036 * 9 8 7 11 11 N 1.34778 * 119.99883 * 138.48301 * 9 8 7 12 12 C 1.36772 * 119.99947 * 184.56898 * 11 9 8 13 13 H 1.08001 * 119.99933 * 224.36506 * 12 11 9 14 14 C 1.39121 * 119.99694 * 44.36965 * 12 11 9 15 15 N 1.31311 * 120.00651 * 9.22659 * 14 12 11 16 16 Si 1.86804 * 119.99567 * 189.22709 * 14 12 11 17 17 H 1.48494 * 109.47316 * 59.99765 * 16 14 12 18 18 H 1.48499 * 109.46807 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47046 * 299.99737 * 16 14 12 20 20 C 1.46505 * 120.00262 * 4.56488 * 11 9 8 21 21 C 1.52999 * 117.50131 * 185.56081 * 20 11 9 22 22 C 1.52993 * 117.49647 * 116.93688 * 20 11 9 23 23 C 1.40142 * 120.47683 * 359.97438 * 8 7 6 24 24 C 1.36491 * 120.59777 * 0.02562 * 23 8 7 25 25 C 1.39487 * 119.88824 * 0.28349 * 24 23 8 26 26 C 1.35292 * 119.73014 * 179.97438 * 2 1 3 27 27 O 1.21720 * 121.20565 * 0.04967 * 26 2 1 28 28 H 1.09000 * 109.46989 * 270.01373 * 1 2 3 29 29 H 1.08990 * 109.47407 * 30.01993 * 1 2 3 30 30 H 1.09009 * 109.46956 * 150.02108 * 1 2 3 31 31 H 1.40994 * 100.00102 * 179.97438 * 4 3 2 32 32 H 1.08005 * 120.28029 * 359.97438 * 7 6 5 33 33 H 0.96999 * 120.00050 * 184.99737 * 15 14 12 34 34 H 1.09001 * 115.54561 * 331.27108 * 20 11 9 35 35 H 1.08994 * 117.49515 * 0.02562 * 21 20 11 36 36 H 1.08999 * 117.49285 * 145.01948 * 21 20 11 37 37 H 1.09003 * 117.49562 * 214.98079 * 22 20 11 38 38 H 1.09006 * 117.50258 * 359.97438 * 22 20 11 39 39 H 1.08005 * 119.70197 * 180.02562 * 23 8 7 40 40 H 1.08001 * 120.05523 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1421 1.1860 0.0000 4 16 1.2137 2.6834 0.0007 5 7 3.4502 1.2619 0.0130 6 6 4.2245 0.1512 0.0072 7 6 5.6192 0.2344 0.0014 8 6 6.3730 -0.9331 -0.0050 9 6 7.8498 -0.8534 -0.0117 10 8 8.4111 -0.0318 -0.7103 11 7 8.5734 -1.6917 0.7566 12 6 9.9329 -1.5573 0.8224 13 1 10.5654 -2.4307 0.7633 14 6 10.5010 -0.2954 0.9657 15 7 9.7384 0.7431 1.2191 16 14 12.3488 -0.0786 0.7977 17 1 12.7771 -0.5133 -0.5560 18 1 12.6989 1.3514 0.9918 19 1 13.0390 -0.9014 1.8234 20 6 7.9037 -2.7468 1.5212 21 6 8.7616 -3.5818 2.4739 22 6 8.2443 -4.1968 1.1720 23 6 5.7439 -2.1854 -0.0051 24 6 4.3822 -2.2788 0.0006 25 6 3.6060 -1.1198 0.0005 26 6 2.1360 -1.1748 0.0005 27 8 1.5447 -2.2388 0.0001 28 1 -0.3633 0.0002 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8903 -0.5136 31 1 2.2647 3.6232 0.0011 32 1 6.1073 1.1979 0.0010 33 1 10.1241 1.6327 1.2471 34 1 6.8797 -2.5293 1.8251 35 1 9.8241 -3.3459 2.5320 36 1 8.3021 -3.9139 3.4048 37 1 7.4444 -4.9336 1.2465 38 1 8.9662 -4.3659 0.3730 39 1 6.3419 -3.0847 -0.0096 40 1 3.9065 -3.2484 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299302009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:40 Heat of formation + Delta-G solvation = 43.179312 kcal Electronic energy + Delta-G solvation = -27611.488072 eV Core-core repulsion = 23712.911848 eV Total energy + Delta-G solvation = -3898.576224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52894 -39.35217 -37.95737 -37.28991 -36.11903 -34.43834 -32.93328 -31.38132 -30.84504 -30.04782 -27.93230 -25.72025 -24.89634 -23.83457 -22.03527 -21.71726 -21.50577 -20.15417 -19.23585 -18.79964 -17.80816 -16.93752 -16.54268 -16.23293 -15.97596 -15.45165 -15.05453 -14.69878 -14.59103 -14.32078 -13.82974 -13.75748 -13.59187 -13.50648 -13.34614 -13.04960 -12.88092 -12.63774 -12.03990 -11.74687 -11.66006 -11.53256 -11.16441 -10.99397 -10.92682 -10.74890 -10.37345 -10.29364 -10.09163 -10.07054 -9.99759 -9.75655 -9.26912 -8.86116 -8.77098 -8.18997 -7.74738 -7.16541 -6.17569 -4.01672 0.40195 0.58681 0.86962 1.81725 2.16378 2.36936 2.67588 3.25380 3.31714 3.32991 3.86185 4.04286 4.09583 4.25956 4.33865 4.72519 4.74211 4.79228 4.90751 4.98818 5.12318 5.27627 5.32203 5.41748 5.48021 5.52919 5.57144 5.69915 5.81916 5.96995 6.10914 6.15806 6.22457 6.29069 6.37261 6.56043 6.66156 6.73076 6.85405 6.92124 7.49936 7.55830 7.58573 8.13806 8.91704 9.01556 9.48859 10.13222 10.87021 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016273 B = 0.003254 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.235051 B = 8602.281240 C = 9988.479704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.532 5.532 3 C 0.381 3.619 4 S -0.038 6.038 5 N -0.517 5.517 6 C 0.149 3.851 7 C -0.061 4.061 8 C -0.043 4.043 9 C 0.511 3.489 10 O -0.517 6.517 11 N -0.413 5.413 12 C -0.337 4.337 13 H 0.082 0.918 14 C 0.062 3.938 15 N -0.827 5.827 16 Si 0.916 3.084 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.064 3.936 21 C -0.174 4.174 22 C -0.208 4.208 23 C -0.116 4.116 24 C -0.052 4.052 25 C -0.195 4.195 26 C 0.557 3.443 27 O -0.512 6.512 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.268 0.732 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.145 0.855 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.532 -0.577 0.120 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.258 5.258 3 C 0.004 3.996 4 S 0.118 5.882 5 N -0.243 5.243 6 C 0.037 3.963 7 C -0.082 4.082 8 C -0.048 4.048 9 C 0.298 3.702 10 O -0.394 6.394 11 N -0.133 5.133 12 C -0.464 4.464 13 H 0.100 0.900 14 C -0.149 4.149 15 N -0.460 5.460 16 Si 0.743 3.257 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.201 1.201 20 C -0.042 4.042 21 C -0.211 4.211 22 C -0.247 4.247 23 C -0.135 4.135 24 C -0.071 4.071 25 C -0.202 4.202 26 C 0.350 3.650 27 O -0.387 6.387 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.164 0.836 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.163 0.837 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.750 0.729 -0.136 17.766 hybrid contribution 1.751 -0.674 0.067 1.877 sum -15.999 0.055 -0.068 16.000 Atomic orbital electron populations 1.22181 0.76456 1.05174 1.04427 1.46154 1.09599 1.05350 1.64661 1.23929 0.91326 0.89542 0.94833 1.86899 1.12220 0.96967 1.92072 1.69146 1.00474 1.30633 1.24011 1.18521 0.93598 0.86723 0.97445 1.20976 0.89515 0.99643 0.98089 1.20786 0.96684 0.92690 0.94683 1.17647 0.84099 0.85288 0.83134 1.90637 1.70841 1.36499 1.41427 1.42590 1.05946 1.27225 1.37488 1.18925 0.79985 0.93916 1.53547 0.89990 1.25332 0.99198 0.95826 0.94517 1.69780 1.36616 0.99105 1.40541 0.86201 0.83402 0.77302 0.78786 1.19911 1.21019 1.20092 1.22013 0.96642 0.86471 0.99048 1.23120 1.01873 1.03344 0.92805 1.23375 1.04032 0.97091 1.00162 1.21472 0.94110 0.98176 0.99790 1.20603 0.93151 0.97217 0.96142 1.20439 0.91656 0.95508 1.12620 1.18413 0.87800 0.82499 0.76244 1.90838 1.70504 1.27714 1.49637 0.90084 0.88905 0.88503 0.89294 0.83624 0.92192 0.87188 0.87414 0.89640 0.89442 0.88808 0.83736 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 9.91 59.85 0.59 1.07 16 2 N -0.53 -6.60 3.02 -124.76 -0.38 -6.97 16 3 C 0.38 4.80 7.82 -88.53 -0.69 4.11 16 4 S -0.04 -0.31 23.79 -107.50 -2.56 -2.87 16 5 N -0.52 -8.19 10.27 -10.80 -0.11 -8.30 16 6 C 0.15 2.64 6.63 -84.55 -0.56 2.08 16 7 C -0.06 -1.23 9.62 -38.76 -0.37 -1.60 16 8 C -0.04 -0.90 5.27 -104.96 -0.55 -1.45 16 9 C 0.51 12.98 6.43 -12.31 -0.08 12.90 16 10 O -0.52 -15.21 14.62 5.30 0.08 -15.13 16 11 N -0.41 -10.10 2.85 -108.78 -0.31 -10.41 16 12 C -0.34 -8.89 7.85 -15.02 -0.12 -9.01 16 13 H 0.08 2.07 7.32 -52.49 -0.38 1.68 16 14 C 0.06 1.70 4.67 -17.45 -0.08 1.62 16 15 N -0.83 -23.90 11.23 55.50 0.62 -23.28 16 16 Si 0.92 21.17 29.57 -169.99 -5.03 16.14 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 C 0.06 1.25 4.38 -67.93 -0.30 0.95 16 21 C -0.17 -3.02 9.80 -26.73 -0.26 -3.28 16 22 C -0.21 -3.35 9.52 -26.73 -0.25 -3.61 16 23 C -0.12 -2.00 7.39 -39.50 -0.29 -2.29 16 24 C -0.05 -0.82 9.60 -39.75 -0.38 -1.20 16 25 C -0.20 -3.26 5.90 -104.65 -0.62 -3.88 16 26 C 0.56 8.56 7.66 -12.43 -0.10 8.47 16 27 O -0.51 -8.48 16.28 5.17 0.08 -8.39 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.53 6.48 -51.93 -0.34 0.20 16 30 H 0.10 0.79 7.46 -51.92 -0.39 0.40 16 31 H 0.14 1.13 9.50 96.90 0.92 2.05 16 32 H 0.15 3.13 8.06 -52.48 -0.42 2.71 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.11 2.01 5.88 -51.93 -0.31 1.70 16 35 H 0.11 2.06 6.79 -51.93 -0.35 1.71 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.15 2.31 5.51 -52.48 -0.29 2.02 16 40 H 0.14 1.89 7.80 -52.49 -0.41 1.49 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -33.74 351.08 -9.16 -42.90 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -2.79 Total: 6.14 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -4.06 Total: 4.88 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.18 Total: -48.97 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.16 Total: -23.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.56 Total: -2.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.74 -9.16 -42.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299302009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.084 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds