Wall clock time and date at job start Wed Apr 1 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36562 * 119.72290 * 2 1 4 4 S 1.76194 * 118.47831 * 0.02562 * 3 2 1 5 5 N 1.31032 * 123.04527 * 179.32440 * 3 2 1 6 6 C 1.35399 * 121.55338 * 1.00311 * 5 3 2 7 7 C 1.39721 * 121.46940 * 179.05654 * 6 5 3 8 8 C 1.38973 * 119.43518 * 180.02562 * 7 6 5 9 9 C 1.47894 * 119.75994 * 179.97438 * 8 7 6 10 10 O 1.21577 * 120.00096 * 318.48036 * 9 8 7 11 11 N 1.34778 * 119.99883 * 138.48301 * 9 8 7 12 12 C 1.36772 * 119.99947 * 184.56898 * 11 9 8 13 13 H 1.08001 * 119.99933 * 224.36506 * 12 11 9 14 14 C 1.39121 * 119.99694 * 44.36965 * 12 11 9 15 15 N 1.31311 * 120.00651 * 9.22659 * 14 12 11 16 16 Si 1.86804 * 119.99567 * 189.22709 * 14 12 11 17 17 H 1.48494 * 109.47316 * 59.99765 * 16 14 12 18 18 H 1.48499 * 109.46807 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47046 * 299.99737 * 16 14 12 20 20 C 1.46505 * 120.00262 * 4.56488 * 11 9 8 21 21 C 1.52999 * 117.50131 * 185.56081 * 20 11 9 22 22 C 1.52993 * 117.49647 * 116.93688 * 20 11 9 23 23 C 1.40142 * 120.47683 * 359.97438 * 8 7 6 24 24 C 1.36491 * 120.59777 * 0.02562 * 23 8 7 25 25 C 1.39487 * 119.88824 * 0.28349 * 24 23 8 26 26 C 1.35292 * 119.73014 * 179.97438 * 2 1 3 27 27 O 1.21720 * 121.20565 * 0.04967 * 26 2 1 28 28 H 1.09000 * 109.46989 * 270.01373 * 1 2 3 29 29 H 1.08990 * 109.47407 * 30.01993 * 1 2 3 30 30 H 1.09009 * 109.46956 * 150.02108 * 1 2 3 31 31 H 1.40994 * 100.00102 * 179.97438 * 4 3 2 32 32 H 1.08005 * 120.28029 * 359.97438 * 7 6 5 33 33 H 0.96999 * 120.00050 * 184.99737 * 15 14 12 34 34 H 1.09001 * 115.54561 * 331.27108 * 20 11 9 35 35 H 1.08994 * 117.49515 * 0.02562 * 21 20 11 36 36 H 1.08999 * 117.49285 * 145.01948 * 21 20 11 37 37 H 1.09003 * 117.49562 * 214.98079 * 22 20 11 38 38 H 1.09006 * 117.50258 * 359.97438 * 22 20 11 39 39 H 1.08005 * 119.70197 * 180.02562 * 23 8 7 40 40 H 1.08001 * 120.05523 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1421 1.1860 0.0000 4 16 1.2137 2.6834 0.0007 5 7 3.4502 1.2619 0.0130 6 6 4.2245 0.1512 0.0072 7 6 5.6192 0.2344 0.0014 8 6 6.3730 -0.9331 -0.0050 9 6 7.8498 -0.8534 -0.0117 10 8 8.4111 -0.0318 -0.7103 11 7 8.5734 -1.6917 0.7566 12 6 9.9329 -1.5573 0.8224 13 1 10.5654 -2.4307 0.7633 14 6 10.5010 -0.2954 0.9657 15 7 9.7384 0.7431 1.2191 16 14 12.3488 -0.0786 0.7977 17 1 12.7771 -0.5133 -0.5560 18 1 12.6989 1.3514 0.9918 19 1 13.0390 -0.9014 1.8234 20 6 7.9037 -2.7468 1.5212 21 6 8.7616 -3.5818 2.4739 22 6 8.2443 -4.1968 1.1720 23 6 5.7439 -2.1854 -0.0051 24 6 4.3822 -2.2788 0.0006 25 6 3.6060 -1.1198 0.0005 26 6 2.1360 -1.1748 0.0005 27 8 1.5447 -2.2388 0.0001 28 1 -0.3633 0.0002 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8903 -0.5136 31 1 2.2647 3.6232 0.0011 32 1 6.1073 1.1979 0.0010 33 1 10.1241 1.6327 1.2471 34 1 6.8797 -2.5293 1.8251 35 1 9.8241 -3.3459 2.5320 36 1 8.3021 -3.9139 3.4048 37 1 7.4444 -4.9336 1.2465 38 1 8.9662 -4.3659 0.3730 39 1 6.3419 -3.0847 -0.0096 40 1 3.9065 -3.2484 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299302009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:39 Heat of formation + Delta-G solvation = 21.374303 kcal Electronic energy + Delta-G solvation = -27612.433609 eV Core-core repulsion = 23712.911848 eV Total energy + Delta-G solvation = -3899.521760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.70084 -40.96001 -39.31273 -38.54289 -37.81836 -35.61023 -34.82245 -33.06569 -32.39533 -31.38465 -28.92974 -27.37509 -26.17756 -25.25684 -23.39929 -23.11191 -22.98347 -21.71762 -20.58537 -20.00683 -18.98931 -18.35316 -17.88292 -17.58413 -17.24985 -16.88754 -16.53129 -16.23071 -16.08755 -15.54331 -15.31780 -15.20370 -14.93396 -14.76650 -14.64243 -14.49833 -14.10925 -13.68853 -13.51858 -13.28831 -13.03169 -12.85709 -12.81045 -12.70325 -12.39407 -12.23364 -12.13097 -11.69679 -11.50156 -11.34965 -11.23450 -11.07055 -10.79854 -10.36881 -10.09242 -10.01363 -9.07482 -8.85859 -8.19974 -6.08945 -0.81744 -0.47380 -0.29478 0.89632 1.05262 1.35378 1.39139 1.44726 1.45199 1.48978 2.19693 2.39033 2.72935 2.90311 2.94613 3.08421 3.21096 3.35326 3.56722 3.77684 3.98403 4.07888 4.10954 4.18108 4.27941 4.30925 4.41837 4.44200 4.69043 4.75417 4.76676 4.89727 4.92916 4.98015 5.02604 5.25623 5.28614 5.33303 5.43156 5.47807 5.55095 6.13391 6.39073 6.42570 6.93836 7.09964 7.55353 8.22370 8.83495 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016273 B = 0.003254 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.235051 B = 8602.281240 C = 9988.479704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.529 5.529 3 C 0.383 3.617 4 S 0.038 5.962 5 N -0.558 5.558 6 C 0.159 3.841 7 C -0.086 4.086 8 C -0.059 4.059 9 C 0.499 3.501 10 O -0.577 6.577 11 N -0.426 5.426 12 C -0.348 4.348 13 H 0.089 0.911 14 C 0.008 3.992 15 N -0.868 5.868 16 Si 0.978 3.022 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.253 1.253 20 C 0.032 3.968 21 C -0.170 4.170 22 C -0.175 4.175 23 C -0.113 4.113 24 C -0.033 4.033 25 C -0.208 4.208 26 C 0.559 3.441 27 O -0.522 6.522 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.260 0.740 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 -2.174 0.743 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.253 5.253 3 C 0.008 3.992 4 S 0.195 5.805 5 N -0.285 5.285 6 C 0.046 3.954 7 C -0.107 4.107 8 C -0.064 4.064 9 C 0.288 3.712 10 O -0.459 6.459 11 N -0.144 5.144 12 C -0.476 4.476 13 H 0.106 0.894 14 C -0.198 4.198 15 N -0.503 5.503 16 Si 0.802 3.198 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.177 1.177 20 C -0.073 4.073 21 C -0.208 4.208 22 C -0.213 4.213 23 C -0.132 4.132 24 C -0.052 4.052 25 C -0.215 4.215 26 C 0.351 3.649 27 O -0.398 6.398 28 H 0.119 0.881 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.100 0.900 39 H 0.176 0.824 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.059 -0.906 0.521 21.085 hybrid contribution 2.433 -0.107 -0.141 2.440 sum -18.626 -1.013 0.379 18.657 Atomic orbital electron populations 1.22571 0.73410 1.06645 1.06243 1.46273 1.11369 1.04475 1.63210 1.24860 0.90975 0.91658 0.91678 1.86717 1.09969 0.93614 1.90249 1.69178 1.01966 1.30012 1.27391 1.18427 0.92700 0.88108 0.96126 1.20707 0.90994 0.98192 1.00827 1.20445 0.94091 0.94632 0.97253 1.18373 0.86109 0.84451 0.82240 1.90567 1.72647 1.38809 1.43837 1.42777 1.05707 1.28210 1.37704 1.19238 0.81513 0.94040 1.52774 0.89369 1.26241 1.03439 0.95724 0.94401 1.69930 1.38276 0.99145 1.42987 0.85260 0.78546 0.77142 0.78889 1.20263 1.21425 1.17740 1.22245 0.97328 0.86733 1.00989 1.23191 1.00458 1.02462 0.94659 1.23418 1.04178 0.95059 0.98686 1.21429 0.94825 0.96819 1.00133 1.20854 0.92269 0.98205 0.93868 1.20723 0.93090 0.95228 1.12498 1.18176 0.87186 0.83243 0.76246 1.90832 1.70539 1.28267 1.50171 0.88067 0.86292 0.88281 0.89509 0.86847 0.93053 0.85996 0.89683 0.86468 0.85131 0.90037 0.82358 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 9.91 127.77 1.27 1.89 16 2 N -0.53 -11.65 3.02 -666.55 -2.02 -13.66 16 3 C 0.38 8.87 7.82 179.62 1.41 10.28 16 4 S 0.04 0.48 23.79 -56.49 -1.34 -0.86 16 5 N -0.56 -17.64 10.27 -188.09 -1.93 -19.57 16 6 C 0.16 5.76 6.63 39.72 0.26 6.03 16 7 C -0.09 -3.71 9.62 22.80 0.22 -3.49 16 8 C -0.06 -2.61 5.27 -20.08 -0.11 -2.71 16 9 C 0.50 27.05 6.43 86.80 0.56 27.60 16 10 O -0.58 -36.75 14.62 -3.96 -0.06 -36.81 16 11 N -0.43 -21.66 2.85 -616.34 -1.76 -23.42 16 12 C -0.35 -19.11 7.85 84.13 0.66 -18.45 16 13 H 0.09 4.57 7.32 -2.91 -0.02 4.55 16 14 C 0.01 0.46 4.67 84.98 0.40 0.86 16 15 N -0.87 -53.51 11.23 21.69 0.24 -53.27 16 16 Si 0.98 45.21 29.57 68.60 2.03 47.24 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.25 -10.66 7.11 99.48 0.71 -9.96 16 20 C 0.03 1.22 4.38 44.99 0.20 1.42 16 21 C -0.17 -5.65 9.80 30.59 0.30 -5.35 16 22 C -0.18 -5.24 9.52 30.59 0.29 -4.95 16 23 C -0.11 -3.86 7.39 22.32 0.16 -3.69 16 24 C -0.03 -0.98 9.60 22.16 0.21 -0.77 16 25 C -0.21 -6.74 5.90 -19.88 -0.12 -6.85 16 26 C 0.56 15.90 7.66 86.49 0.66 16.57 16 27 O -0.52 -15.79 16.28 -4.41 -0.07 -15.86 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.12 0.80 6.48 -2.39 -0.02 0.79 16 30 H 0.10 1.24 7.46 -2.38 -0.02 1.23 16 31 H 0.14 1.88 9.50 73.80 0.70 2.58 16 32 H 0.11 5.50 8.06 -2.91 -0.02 5.48 16 33 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.12 4.37 5.88 -2.39 -0.01 4.36 16 35 H 0.08 3.23 6.79 -2.39 -0.02 3.22 16 36 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 39 H 0.16 4.86 5.51 -2.91 -0.02 4.85 16 40 H 0.17 4.02 7.80 -2.91 -0.02 4.00 16 Total: -1.00 -80.57 351.08 3.30 -77.28 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 1.83 Total: 20.58 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 6.37 Total: 18.36 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -5.46 Total: -109.92 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.13 Total: -52.67 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -1.34 Total: -0.86 kcal Total: -80.57 3.30 -77.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299302009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.652 kcal (2) G-P(sol) polarization free energy of solvation -80.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds