Wall clock time and date at job start Wed Apr 1 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99860 * 2 1 4 4 C 1.50700 * 109.47295 * 270.00166 * 3 2 1 5 5 H 1.07998 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00314 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00230 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99893 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47153 * 90.00138 * 8 6 4 10 10 H 1.48503 * 109.47298 * 210.00062 * 8 6 4 11 11 H 1.48507 * 109.47185 * 330.00301 * 8 6 4 12 12 C 1.34778 * 120.00064 * 180.02562 * 2 1 3 13 13 O 1.21360 * 120.00015 * 174.34426 * 12 2 1 14 14 C 1.49331 * 119.99646 * 354.34189 * 12 2 1 15 15 O 1.21377 * 120.00496 * 359.89666 * 14 12 2 16 16 N 1.34784 * 119.99593 * 179.89307 * 14 12 2 17 17 C 1.39545 * 119.99845 * 185.08765 * 16 14 12 18 18 C 1.39082 * 119.93301 * 144.47130 * 17 16 14 19 19 C 1.37774 * 120.06444 * 180.02562 * 18 17 16 20 20 C 1.39637 * 119.93336 * 359.97438 * 19 18 17 21 21 C 1.47783 * 120.06476 * 179.97438 * 20 19 18 22 22 N 1.30265 * 125.47603 * 0.02562 * 21 20 19 23 23 C 1.31340 * 117.02175 * 179.73218 * 22 21 20 24 24 C 1.33691 * 115.85658 * 0.48968 * 23 22 21 25 25 S 1.76177 * 125.47427 * 180.02562 * 21 20 19 26 26 C 1.39636 * 119.86931 * 0.28275 * 20 19 18 27 27 C 1.37768 * 119.93169 * 359.41691 * 26 20 19 28 28 H 1.09005 * 109.46609 * 264.05031 * 1 2 3 29 29 H 1.09002 * 109.47006 * 24.03852 * 1 2 3 30 30 H 1.08994 * 109.47517 * 144.04772 * 1 2 3 31 31 H 1.08990 * 109.47218 * 30.00168 * 3 2 1 32 32 H 1.09001 * 109.46767 * 150.00644 * 3 2 1 33 33 H 0.96996 * 120.00196 * 179.97438 * 7 6 4 34 34 H 0.96993 * 119.99689 * 5.09016 * 16 14 12 35 35 H 1.07992 * 119.96714 * 359.97274 * 18 17 16 36 36 H 1.08000 * 120.03354 * 180.02562 * 19 18 17 37 37 H 1.08008 * 122.07239 * 180.30213 * 23 22 21 38 38 H 1.07999 * 125.88674 * 179.81452 * 24 23 22 39 39 H 1.08004 * 120.03837 * 179.69934 * 26 20 19 40 40 H 1.08008 * 119.96895 * 180.30021 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6728 7 7 3.3455 3.2575 -2.9127 8 14 3.7350 3.9281 -0.2530 9 1 5.1084 3.5058 0.1224 10 1 3.7509 5.3549 -0.6642 11 1 2.8293 3.7586 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3481 -1.1697 -0.1041 14 6 1.3976 -2.4573 0.1264 15 8 0.1885 -2.4548 0.2319 16 7 2.0714 -3.6247 0.1237 17 6 1.3735 -4.8330 0.1352 18 6 1.8687 -5.9271 -0.5664 19 6 1.1816 -7.1213 -0.5573 20 6 -0.0127 -7.2326 0.1576 21 6 -0.7523 -8.5120 0.1689 22 7 -0.3894 -9.6005 -0.4479 23 6 -1.1718 -10.6477 -0.3202 24 6 -2.2660 -10.4705 0.4271 25 16 -2.2666 -8.8101 1.0186 26 6 -0.5100 -6.1309 0.8566 27 6 0.1846 -4.9412 0.8489 28 1 -0.3633 -0.1065 1.0222 29 1 -0.3633 0.9386 -0.4186 30 1 -0.3634 -0.8318 -0.6033 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 3.8223 4.0834 -3.0900 34 1 3.0413 -3.6248 0.1138 35 1 2.7921 -5.8403 -1.1195 36 1 1.5668 -7.9707 -1.1019 37 1 -0.9467 -11.5927 -0.7924 38 1 -3.0177 -11.2172 0.6361 39 1 -1.4360 -6.2125 1.4065 40 1 -0.1971 -4.0900 1.3934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338826754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:44 Heat of formation + Delta-G solvation = 28.868935 kcal Electronic energy + Delta-G solvation = -25916.499548 eV Core-core repulsion = 22017.302780 eV Total energy + Delta-G solvation = -3899.196769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04269 -39.96003 -39.12418 -37.90490 -35.83227 -34.64646 -32.56528 -31.72483 -31.33720 -29.23938 -28.71914 -26.52128 -25.68983 -24.34640 -23.42947 -22.57049 -21.44508 -20.04833 -19.50773 -18.63050 -17.93306 -17.25495 -17.07258 -16.56430 -15.95345 -15.81296 -15.34339 -15.26935 -14.87550 -14.77532 -14.42799 -14.20617 -13.80574 -13.74616 -13.43603 -13.28713 -12.95147 -12.65319 -12.50133 -12.41637 -12.14174 -11.85872 -11.70056 -11.52203 -11.10548 -10.96085 -10.71808 -10.59894 -10.22911 -10.06872 -9.84581 -9.62279 -9.41893 -9.29374 -8.97822 -8.66647 -8.13034 -7.92642 -6.15779 -4.16356 -0.12598 0.92576 1.06640 1.15834 1.34139 1.74784 2.47864 2.58974 3.24072 3.29849 3.31514 3.44523 3.62521 3.66451 3.84412 4.32365 4.51512 4.62083 4.64433 4.75603 4.79899 5.02583 5.08565 5.16143 5.19308 5.28126 5.64795 5.75711 5.81262 5.93147 5.98245 6.02816 6.12530 6.15434 6.38589 6.46716 6.66590 6.72357 6.96530 7.08509 7.34200 7.47577 7.67590 7.95535 8.30810 8.51507 8.87077 9.42204 10.97237 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.001896 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.472086 B =14764.933292 C =15109.960824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.558 5.558 3 C 0.213 3.787 4 C -0.533 4.533 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.497 3.503 13 O -0.518 6.518 14 C 0.512 3.488 15 O -0.497 6.497 16 N -0.652 5.652 17 C 0.171 3.829 18 C -0.144 4.144 19 C -0.047 4.047 20 C -0.056 4.056 21 C 0.130 3.870 22 N -0.472 5.472 23 C 0.042 3.958 24 C -0.257 4.257 25 S 0.085 5.915 26 C -0.074 4.074 27 C -0.121 4.121 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.426 0.574 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.175 0.825 38 H 0.178 0.822 39 H 0.128 0.872 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.312 -25.238 9.601 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.289 5.289 3 C 0.093 3.907 4 C -0.572 4.572 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.277 3.723 13 O -0.395 6.395 14 C 0.295 3.705 15 O -0.371 6.371 16 N -0.298 5.298 17 C 0.075 3.925 18 C -0.165 4.165 19 C -0.070 4.070 20 C -0.061 4.061 21 C -0.144 4.144 22 N -0.186 5.186 23 C -0.109 4.109 24 C -0.396 4.396 25 S 0.341 5.659 26 C -0.095 4.095 27 C -0.141 4.141 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.264 0.736 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.192 0.808 38 H 0.196 0.804 39 H 0.146 0.854 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.708 -24.431 9.836 28.430 hybrid contribution 0.813 -0.302 0.084 0.872 sum -9.895 -24.733 9.921 28.426 Atomic orbital electron populations 1.22090 0.78905 1.03815 1.01701 1.47787 1.07721 1.06080 1.67291 1.19893 0.92499 0.79248 0.99016 1.21246 1.37530 1.07528 0.90869 0.90538 1.24850 0.95120 0.97243 0.95676 1.69888 1.41034 1.23510 1.18663 0.86852 0.80120 0.79921 0.82807 1.19804 1.20907 1.18994 1.19489 0.87536 0.84348 0.80945 1.90761 1.13346 1.86449 1.48955 1.20901 0.87709 0.85583 0.76272 1.90687 1.13833 1.87015 1.45581 1.43274 1.11735 1.03367 1.71463 1.17975 0.93718 0.85378 0.95415 1.20970 1.02394 0.92476 1.00658 1.21013 0.92508 0.97280 0.96153 1.17780 0.96047 0.89230 1.03025 1.25917 0.95093 0.95934 0.97463 1.66578 1.31623 0.98821 1.21563 1.21678 0.91135 0.98253 0.99850 1.27016 1.05177 0.99928 1.07467 1.85032 1.23668 1.07360 1.49823 1.21012 0.99237 0.91462 0.97788 1.21204 0.95098 0.98306 0.99479 0.92949 0.90801 0.89685 0.94300 0.94236 0.92397 0.73592 0.84474 0.84207 0.80795 0.80448 0.85394 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 9.27 59.85 0.55 1.86 16 2 N -0.56 -11.41 2.86 -183.52 -0.52 -11.94 16 3 C 0.21 5.02 4.16 -5.19 -0.02 5.00 16 4 C -0.53 -14.93 9.94 -34.44 -0.34 -15.28 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 12 C 0.50 9.73 7.72 -11.64 -0.09 9.64 16 13 O -0.52 -11.46 16.12 5.49 0.09 -11.37 16 14 C 0.51 8.09 7.60 -11.64 -0.09 8.01 16 15 O -0.50 -7.94 10.70 5.47 0.06 -7.88 16 16 N -0.65 -8.38 5.31 -10.27 -0.05 -8.43 16 17 C 0.17 2.01 6.29 -83.72 -0.53 1.48 16 18 C -0.14 -1.45 9.95 -39.44 -0.39 -1.84 16 19 C -0.05 -0.47 9.67 -39.23 -0.38 -0.85 16 20 C -0.06 -0.59 5.87 -104.95 -0.62 -1.20 16 21 C 0.13 1.33 7.34 -14.31 -0.11 1.23 16 22 N -0.47 -4.97 10.14 -11.37 -0.12 -5.09 16 23 C 0.04 0.34 11.25 -19.36 -0.22 0.12 16 24 C -0.26 -1.77 11.35 29.14 0.33 -1.44 16 25 S 0.09 0.69 22.39 -107.50 -2.41 -1.72 16 26 C -0.07 -0.74 9.59 -39.23 -0.38 -1.12 16 27 C -0.12 -1.38 8.67 -39.44 -0.34 -1.73 16 28 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.08 1.40 5.84 -51.93 -0.30 1.10 16 31 H 0.04 0.86 7.13 -51.93 -0.37 0.49 16 32 H 0.04 0.96 6.93 -51.93 -0.36 0.60 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.43 4.89 8.30 -40.82 -0.34 4.55 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 1.28 7.81 -52.49 -0.41 0.87 16 37 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 1.06 7.29 -52.48 -0.38 0.67 16 40 H 0.15 1.79 6.23 -52.48 -0.33 1.47 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -33.17 360.07 -8.32 -41.49 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.19 Total: 3.66 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -2.71 Total: 5.89 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.08 Total: -51.64 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.15 Total: -19.25 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.41 Total: -1.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.17 -8.32 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338826754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.364 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds