Wall clock time and date at job start Wed Apr 1 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99860 * 2 1 4 4 C 1.50700 * 109.47295 * 270.00166 * 3 2 1 5 5 H 1.07998 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00314 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00230 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99893 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47153 * 90.00138 * 8 6 4 10 10 H 1.48503 * 109.47298 * 210.00062 * 8 6 4 11 11 H 1.48507 * 109.47185 * 330.00301 * 8 6 4 12 12 C 1.34778 * 120.00064 * 180.02562 * 2 1 3 13 13 O 1.21360 * 120.00015 * 174.34426 * 12 2 1 14 14 C 1.49331 * 119.99646 * 354.34189 * 12 2 1 15 15 O 1.21377 * 120.00496 * 359.89666 * 14 12 2 16 16 N 1.34784 * 119.99593 * 179.89307 * 14 12 2 17 17 C 1.39545 * 119.99845 * 185.08765 * 16 14 12 18 18 C 1.39082 * 119.93301 * 144.47130 * 17 16 14 19 19 C 1.37774 * 120.06444 * 180.02562 * 18 17 16 20 20 C 1.39637 * 119.93336 * 359.97438 * 19 18 17 21 21 C 1.47783 * 120.06476 * 179.97438 * 20 19 18 22 22 N 1.30265 * 125.47603 * 0.02562 * 21 20 19 23 23 C 1.31340 * 117.02175 * 179.73218 * 22 21 20 24 24 C 1.33691 * 115.85658 * 0.48968 * 23 22 21 25 25 S 1.76177 * 125.47427 * 180.02562 * 21 20 19 26 26 C 1.39636 * 119.86931 * 0.28275 * 20 19 18 27 27 C 1.37768 * 119.93169 * 359.41691 * 26 20 19 28 28 H 1.09005 * 109.46609 * 264.05031 * 1 2 3 29 29 H 1.09002 * 109.47006 * 24.03852 * 1 2 3 30 30 H 1.08994 * 109.47517 * 144.04772 * 1 2 3 31 31 H 1.08990 * 109.47218 * 30.00168 * 3 2 1 32 32 H 1.09001 * 109.46767 * 150.00644 * 3 2 1 33 33 H 0.96996 * 120.00196 * 179.97438 * 7 6 4 34 34 H 0.96993 * 119.99689 * 5.09016 * 16 14 12 35 35 H 1.07992 * 119.96714 * 359.97274 * 18 17 16 36 36 H 1.08000 * 120.03354 * 180.02562 * 19 18 17 37 37 H 1.08008 * 122.07239 * 180.30213 * 23 22 21 38 38 H 1.07999 * 125.88674 * 179.81452 * 24 23 22 39 39 H 1.08004 * 120.03837 * 179.69934 * 26 20 19 40 40 H 1.08008 * 119.96895 * 180.30021 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6728 7 7 3.3455 3.2575 -2.9127 8 14 3.7350 3.9281 -0.2530 9 1 5.1084 3.5058 0.1224 10 1 3.7509 5.3549 -0.6642 11 1 2.8293 3.7586 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3481 -1.1697 -0.1041 14 6 1.3976 -2.4573 0.1264 15 8 0.1885 -2.4548 0.2319 16 7 2.0714 -3.6247 0.1237 17 6 1.3735 -4.8330 0.1352 18 6 1.8687 -5.9271 -0.5664 19 6 1.1816 -7.1213 -0.5573 20 6 -0.0127 -7.2326 0.1576 21 6 -0.7523 -8.5120 0.1689 22 7 -0.3894 -9.6005 -0.4479 23 6 -1.1718 -10.6477 -0.3202 24 6 -2.2660 -10.4705 0.4271 25 16 -2.2666 -8.8101 1.0186 26 6 -0.5100 -6.1309 0.8566 27 6 0.1846 -4.9412 0.8489 28 1 -0.3633 -0.1065 1.0222 29 1 -0.3633 0.9386 -0.4186 30 1 -0.3634 -0.8318 -0.6033 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 3.8223 4.0834 -3.0900 34 1 3.0413 -3.6248 0.1138 35 1 2.7921 -5.8403 -1.1195 36 1 1.5668 -7.9707 -1.1019 37 1 -0.9467 -11.5927 -0.7924 38 1 -3.0177 -11.2172 0.6361 39 1 -1.4360 -6.2125 1.4065 40 1 -0.1971 -4.0900 1.3934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338826754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:43 Heat of formation + Delta-G solvation = 6.606356 kcal Electronic energy + Delta-G solvation = -25917.464926 eV Core-core repulsion = 22017.302780 eV Total energy + Delta-G solvation = -3900.162146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.23824 -40.79723 -40.17211 -39.11584 -37.24065 -35.94266 -34.64426 -32.51528 -32.14691 -30.73919 -29.88936 -27.85783 -26.79035 -25.65847 -24.37298 -23.76159 -22.62990 -21.12767 -20.47085 -19.29518 -19.18610 -19.10456 -18.50168 -17.58046 -17.25938 -17.08660 -16.67927 -16.18519 -15.99826 -15.81134 -15.52801 -15.23762 -15.00837 -14.90050 -14.55421 -14.40975 -14.09504 -13.93451 -13.87886 -13.71510 -13.55142 -13.16326 -13.00066 -12.53659 -12.44357 -12.33403 -12.30863 -12.03795 -11.75793 -11.67107 -10.82848 -10.74266 -10.54976 -10.44616 -10.15007 -10.03757 -9.61893 -8.91965 -8.33536 -6.40702 -0.84995 0.10881 0.29415 0.33461 0.61618 0.73958 1.22817 1.37648 1.39935 1.48886 1.87221 2.11154 2.32214 2.50054 2.75401 3.00044 3.00408 3.22695 3.80809 3.88630 4.03829 4.23183 4.33759 4.36183 4.39820 4.45104 4.54034 4.62488 4.72389 4.85051 4.88513 5.00831 5.03205 5.15080 5.19129 5.29731 5.36096 5.38763 5.42700 5.77711 5.90086 6.17525 6.31546 6.60192 6.62595 6.70716 6.91518 7.23333 8.83192 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.001896 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.472086 B =14764.933292 C =15109.960824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.569 5.569 3 C 0.220 3.780 4 C -0.541 4.541 5 H 0.028 0.972 6 C 0.012 3.988 7 N -0.943 5.943 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.234 1.234 12 C 0.490 3.510 13 O -0.551 6.551 14 C 0.521 3.479 15 O -0.500 6.500 16 N -0.637 5.637 17 C 0.148 3.852 18 C -0.135 4.135 19 C -0.054 4.054 20 C -0.054 4.054 21 C 0.098 3.902 22 N -0.490 5.490 23 C 0.021 3.979 24 C -0.240 4.240 25 S 0.102 5.898 26 C -0.074 4.074 27 C -0.126 4.126 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.269 0.731 34 H 0.431 0.569 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.198 0.802 38 H 0.210 0.790 39 H 0.144 0.856 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 -26.874 11.626 31.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.300 5.300 3 C 0.099 3.901 4 C -0.580 4.580 5 H 0.046 0.954 6 C -0.186 4.186 7 N -0.583 5.583 8 Si 0.772 3.228 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.157 1.157 12 C 0.272 3.728 13 O -0.430 6.430 14 C 0.304 3.696 15 O -0.374 6.374 16 N -0.284 5.284 17 C 0.053 3.947 18 C -0.155 4.155 19 C -0.076 4.076 20 C -0.059 4.059 21 C -0.176 4.176 22 N -0.205 5.205 23 C -0.129 4.129 24 C -0.379 4.379 25 S 0.357 5.643 26 C -0.095 4.095 27 C -0.146 4.146 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.271 0.729 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.215 0.785 38 H 0.227 0.773 39 H 0.162 0.838 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.002 -26.118 11.872 31.098 hybrid contribution 1.094 -0.054 -0.622 1.260 sum -10.908 -26.171 11.250 30.504 Atomic orbital electron populations 1.22231 0.76741 1.03795 1.03444 1.47865 1.09109 1.05547 1.67490 1.19634 0.93176 0.81274 0.96025 1.21459 1.37322 1.07127 0.92052 0.95392 1.25875 0.95151 0.98824 0.98794 1.70049 1.42370 1.24437 1.21440 0.85691 0.79804 0.77621 0.79708 1.19689 1.20275 1.15724 1.20145 0.87414 0.85529 0.79717 1.90729 1.14881 1.87229 1.50191 1.20049 0.87347 0.85023 0.77217 1.90684 1.13531 1.86907 1.46324 1.43077 1.11980 1.02935 1.70397 1.18099 0.94375 0.85113 0.97162 1.21125 1.02750 0.91790 0.99869 1.21144 0.92609 0.97443 0.96360 1.17974 0.96007 0.89623 1.02257 1.25913 0.96560 0.95945 0.99185 1.66569 1.32688 0.99457 1.21771 1.22098 0.91460 0.98638 1.00748 1.27473 1.05079 0.99736 1.05597 1.84960 1.22098 1.08226 1.48995 1.21120 0.99700 0.90848 0.97860 1.21207 0.95158 0.98631 0.99562 0.90211 0.90983 0.89553 0.92028 0.94804 0.92158 0.72950 0.82764 0.83475 0.78519 0.77321 0.83791 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.60 9.27 127.77 1.18 3.78 16 2 N -0.57 -23.27 2.86 -852.87 -2.44 -25.71 16 3 C 0.22 10.30 4.16 85.63 0.36 10.65 16 4 C -0.54 -31.13 9.94 25.60 0.25 -30.87 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.69 5.47 84.65 0.46 1.15 16 7 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 8 Si 0.95 42.62 27.47 68.60 1.88 44.51 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.23 -9.28 6.54 99.48 0.65 -8.63 16 12 C 0.49 19.39 7.72 87.23 0.67 20.06 16 13 O -0.55 -24.89 16.12 -3.28 -0.05 -24.94 16 14 C 0.52 16.38 7.60 87.23 0.66 17.05 16 15 O -0.50 -15.61 10.70 -3.33 -0.04 -15.65 16 16 N -0.64 -16.18 5.31 -304.75 -1.62 -17.80 16 17 C 0.15 3.36 6.29 38.32 0.24 3.60 16 18 C -0.14 -2.59 9.95 22.36 0.22 -2.36 16 19 C -0.05 -1.02 9.67 22.50 0.22 -0.81 16 20 C -0.05 -1.08 5.87 -20.08 -0.12 -1.20 16 21 C 0.10 1.87 7.34 87.45 0.64 2.51 16 22 N -0.49 -9.64 10.14 -189.89 -1.92 -11.56 16 23 C 0.02 0.30 11.25 83.73 0.94 1.24 16 24 C -0.24 -2.60 11.35 66.79 0.76 -1.84 16 25 S 0.10 1.43 22.39 -56.49 -1.26 0.16 16 26 C -0.07 -1.42 9.59 22.50 0.22 -1.21 16 27 C -0.13 -2.79 8.67 22.36 0.19 -2.60 16 28 H 0.08 2.17 8.13 -2.38 -0.02 2.15 16 29 H 0.07 2.35 8.03 -2.39 -0.02 2.33 16 30 H 0.09 2.81 5.84 -2.39 -0.01 2.79 16 31 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 32 H 0.03 1.63 6.93 -2.39 -0.02 1.61 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.43 9.86 8.30 -92.71 -0.77 9.09 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.15 2.56 7.81 -2.91 -0.02 2.54 16 37 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.14 2.19 7.29 -2.91 -0.02 2.16 16 40 H 0.14 3.33 6.23 -2.91 -0.02 3.31 16 Total: -1.00 -73.85 360.07 2.04 -71.81 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.28 Total: 18.40 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.91 Total: 19.16 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -5.68 Total: -113.44 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.09 Total: -40.59 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.51 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.26 Total: 0.16 kcal Total: -73.85 2.04 -71.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338826754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.412 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds