Wall clock time and date at job start Wed Apr 1 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99998 * 2 1 4 4 C 1.50694 * 109.47480 * 270.00015 * 3 2 1 5 5 H 1.08007 * 119.99865 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00426 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99785 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00094 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47232 * 89.99541 * 8 6 4 10 10 H 1.48500 * 109.46700 * 209.99890 * 8 6 4 11 11 H 1.48504 * 109.46856 * 329.99426 * 8 6 4 12 12 C 1.34780 * 120.00135 * 179.97438 * 2 1 3 13 13 O 1.21362 * 120.00048 * 174.35245 * 12 2 1 14 14 C 1.49349 * 120.00007 * 354.34667 * 12 2 1 15 15 O 1.21373 * 119.99884 * 359.87623 * 14 12 2 16 16 N 1.34775 * 120.00278 * 179.87774 * 14 12 2 17 17 C 1.39743 * 120.00407 * 185.11168 * 16 14 12 18 18 C 1.39044 * 120.00954 * 144.54729 * 17 16 14 19 19 C 1.38192 * 120.21494 * 180.02562 * 18 17 16 20 20 C 1.38045 * 120.21975 * 359.97438 * 19 18 17 21 21 C 1.39566 * 120.01192 * 0.02562 * 20 19 18 22 22 C 1.47881 * 120.10751 * 180.02562 * 21 20 19 23 23 N 1.30219 * 125.47246 * 179.69584 * 22 21 20 24 24 C 1.31310 * 117.04304 * 179.76952 * 23 22 21 25 25 C 1.33714 * 115.84409 * 0.52622 * 24 23 22 26 26 S 1.76174 * 125.47108 * 359.97438 * 22 21 20 27 27 C 1.38661 * 120.00247 * 324.56502 * 17 16 14 28 28 H 1.08995 * 109.47159 * 264.05570 * 1 2 3 29 29 H 1.08997 * 109.46948 * 24.06149 * 1 2 3 30 30 H 1.09005 * 109.46932 * 144.06148 * 1 2 3 31 31 H 1.08996 * 109.47282 * 30.00002 * 3 2 1 32 32 H 1.09007 * 109.47215 * 149.99504 * 3 2 1 33 33 H 0.97002 * 119.99612 * 180.02562 * 7 6 4 34 34 H 0.97008 * 120.00002 * 5.10188 * 16 14 12 35 35 H 1.08000 * 119.89688 * 0.03500 * 18 17 16 36 36 H 1.07992 * 119.89053 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.99452 * 180.27861 * 20 19 18 38 38 H 1.08001 * 122.07272 * 180.22946 * 24 23 22 39 39 H 1.08007 * 125.89235 * 179.76446 * 25 24 23 40 40 H 1.08004 * 120.10850 * 359.95503 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4389 3.4164 -3.4339 9 1 2.3093 4.2595 -3.9010 10 1 4.6995 4.1989 -3.4961 11 1 3.5560 2.2190 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3481 -1.1698 -0.1029 14 6 1.3976 -2.4574 0.1285 15 8 0.1885 -2.4547 0.2343 16 7 2.0713 -3.6248 0.1266 17 6 1.3725 -4.8349 0.1386 18 6 1.8670 -5.9304 -0.5603 19 6 1.1791 -7.1290 -0.5518 20 6 -0.0032 -7.2465 0.1510 21 6 -0.5081 -6.1528 0.8558 22 6 -1.7742 -6.2766 1.6098 23 7 -2.3353 -5.3293 2.3052 24 6 -3.4653 -5.6200 2.9074 25 6 -3.9078 -6.8712 2.7440 26 16 -2.7620 -7.7313 1.7174 27 6 0.1855 -4.9431 0.8471 28 1 -0.3633 -0.1064 1.0221 29 1 -0.3633 0.9384 -0.4190 30 1 -0.3633 -0.8321 -0.6032 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0310 4.4435 -0.8503 34 1 3.0413 -3.6250 0.1167 35 1 2.7918 -5.8446 -1.1115 36 1 1.5682 -7.9767 -1.0961 37 1 -0.5354 -8.1862 0.1589 38 1 -4.0014 -4.8950 3.5019 39 1 -4.8119 -7.2834 3.1673 40 1 -0.2002 -4.0934 1.3910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338830925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:47 Heat of formation + Delta-G solvation = 25.373433 kcal Electronic energy + Delta-G solvation = -26351.825528 eV Core-core repulsion = 22452.477183 eV Total energy + Delta-G solvation = -3899.348345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92745 -39.85263 -39.02252 -37.77180 -35.67175 -34.47989 -32.60653 -32.38374 -30.13861 -29.47116 -28.05373 -26.24756 -25.70442 -24.69880 -23.28897 -22.62409 -21.37667 -20.12234 -19.33989 -18.64664 -17.38747 -17.00677 -16.70793 -16.54909 -15.92939 -15.72498 -15.46940 -15.16965 -14.80603 -14.70231 -14.41920 -14.26558 -13.80184 -13.62055 -13.30618 -13.11686 -12.92835 -12.41411 -12.28264 -12.13051 -12.04233 -11.69210 -11.63831 -11.29349 -10.97622 -10.86188 -10.66793 -10.50411 -10.21351 -10.01484 -9.96130 -9.69288 -9.56871 -8.85014 -8.59215 -8.49098 -8.30740 -7.81448 -6.10290 -4.15451 -0.05260 0.97236 1.01142 1.28024 1.38491 1.88482 2.61475 2.69057 3.28565 3.34794 3.39445 3.52877 3.69716 3.74981 3.99953 4.40460 4.57723 4.70750 4.77557 4.82953 4.85939 5.00476 5.15040 5.22644 5.24545 5.30319 5.62244 5.84343 5.94194 6.01172 6.08219 6.12765 6.17767 6.22343 6.49069 6.72611 6.81164 7.14276 7.26075 7.35009 7.45614 7.80592 7.88866 8.12331 8.18066 8.60419 8.89006 9.49459 10.97971 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.002315 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.344290 B =12090.415530 C =13013.524698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.561 5.561 3 C 0.242 3.758 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.495 3.505 13 O -0.522 6.522 14 C 0.507 3.493 15 O -0.495 6.495 16 N -0.653 5.653 17 C 0.149 3.851 18 C -0.124 4.124 19 C -0.099 4.099 20 C -0.114 4.114 21 C -0.018 4.018 22 C 0.126 3.874 23 N -0.459 5.459 24 C 0.044 3.956 25 C -0.253 4.253 26 S 0.080 5.920 27 C -0.073 4.073 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.265 0.735 34 H 0.424 0.576 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 -25.135 5.067 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.292 5.292 3 C 0.124 3.876 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.275 3.725 13 O -0.399 6.399 14 C 0.291 3.709 15 O -0.369 6.369 16 N -0.300 5.300 17 C 0.054 3.946 18 C -0.145 4.145 19 C -0.117 4.117 20 C -0.135 4.135 21 C -0.022 4.022 22 C -0.149 4.149 23 N -0.172 5.172 24 C -0.108 4.108 25 C -0.392 4.392 26 S 0.336 5.664 27 C -0.096 4.096 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.141 -25.349 4.804 28.103 hybrid contribution -0.046 0.980 -0.405 1.061 sum -11.187 -24.369 4.398 27.172 Atomic orbital electron populations 1.22053 0.79403 1.03324 1.01714 1.48128 1.07643 1.06731 1.66744 1.19525 0.92614 0.77335 0.98125 1.21371 1.36877 1.06552 0.91923 0.92240 1.24934 0.95183 0.96255 0.97653 1.69928 1.38179 1.14311 1.30812 0.86448 0.77715 0.78629 0.84365 1.20548 1.21021 1.19835 1.19491 0.87532 0.84327 0.81170 1.90747 1.13327 1.86466 1.49388 1.21043 0.87812 0.85687 0.76381 1.90716 1.13839 1.86954 1.45370 1.43258 1.11535 1.03219 1.72036 1.17675 0.94056 0.85842 0.97051 1.21167 1.01720 0.92683 0.98972 1.20784 0.94470 0.97338 0.99116 1.21098 0.96919 0.97375 0.98116 1.17637 0.91305 0.94634 0.98649 1.25889 0.98558 0.90699 0.99758 1.66566 1.09776 1.31586 1.09307 1.21744 0.92693 0.95622 1.00691 1.27047 1.06124 0.98319 1.07714 1.84860 1.17487 1.17445 1.46656 1.21461 0.93727 0.97524 0.96925 0.93025 0.91051 0.90007 0.94084 0.93512 0.92578 0.73711 0.84774 0.84732 0.85715 0.80627 0.80355 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 9.27 59.85 0.55 1.99 16 2 N -0.56 -12.31 2.86 -183.51 -0.52 -12.84 16 3 C 0.24 6.28 5.09 -5.20 -0.03 6.25 16 4 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.49 10.35 7.72 -11.63 -0.09 10.26 16 13 O -0.52 -12.18 16.12 5.49 0.09 -12.09 16 14 C 0.51 8.76 7.61 -11.63 -0.09 8.67 16 15 O -0.50 -8.88 10.71 5.48 0.06 -8.82 16 16 N -0.65 -9.11 5.32 -10.33 -0.05 -9.17 16 17 C 0.15 1.88 6.29 -83.80 -0.53 1.35 16 18 C -0.12 -1.20 9.96 -39.30 -0.39 -1.59 16 19 C -0.10 -0.81 10.02 -39.67 -0.40 -1.20 16 20 C -0.11 -1.04 9.60 -39.16 -0.38 -1.42 16 21 C -0.02 -0.21 5.87 -105.00 -0.62 -0.83 16 22 C 0.13 1.49 7.35 -14.29 -0.10 1.38 16 23 N -0.46 -5.96 10.14 -11.36 -0.12 -6.08 16 24 C 0.04 0.44 11.25 -19.36 -0.22 0.22 16 25 C -0.25 -2.00 11.35 29.15 0.33 -1.67 16 26 S 0.08 0.69 22.39 -107.50 -2.41 -1.72 16 27 C -0.07 -1.00 8.32 -38.98 -0.32 -1.32 16 28 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 30 H 0.08 1.46 5.85 -51.93 -0.30 1.16 16 31 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 32 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.42 5.25 8.30 -40.82 -0.34 4.91 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.87 7.29 -52.49 -0.38 0.49 16 38 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.16 2.49 5.99 -52.48 -0.31 2.17 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -33.35 363.73 -8.68 -42.03 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.22 Total: 3.38 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -2.70 Total: 8.57 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.04 Total: -53.47 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.15 Total: -20.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.41 Total: -1.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.35 -8.68 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338830925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.404 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds