Wall clock time and date at job start Wed Apr 1 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99998 * 2 1 4 4 C 1.50694 * 109.47480 * 270.00015 * 3 2 1 5 5 H 1.08007 * 119.99865 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00426 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99785 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00094 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47232 * 89.99541 * 8 6 4 10 10 H 1.48500 * 109.46700 * 209.99890 * 8 6 4 11 11 H 1.48504 * 109.46856 * 329.99426 * 8 6 4 12 12 C 1.34780 * 120.00135 * 179.97438 * 2 1 3 13 13 O 1.21362 * 120.00048 * 174.35245 * 12 2 1 14 14 C 1.49349 * 120.00007 * 354.34667 * 12 2 1 15 15 O 1.21373 * 119.99884 * 359.87623 * 14 12 2 16 16 N 1.34775 * 120.00278 * 179.87774 * 14 12 2 17 17 C 1.39743 * 120.00407 * 185.11168 * 16 14 12 18 18 C 1.39044 * 120.00954 * 144.54729 * 17 16 14 19 19 C 1.38192 * 120.21494 * 180.02562 * 18 17 16 20 20 C 1.38045 * 120.21975 * 359.97438 * 19 18 17 21 21 C 1.39566 * 120.01192 * 0.02562 * 20 19 18 22 22 C 1.47881 * 120.10751 * 180.02562 * 21 20 19 23 23 N 1.30219 * 125.47246 * 179.69584 * 22 21 20 24 24 C 1.31310 * 117.04304 * 179.76952 * 23 22 21 25 25 C 1.33714 * 115.84409 * 0.52622 * 24 23 22 26 26 S 1.76174 * 125.47108 * 359.97438 * 22 21 20 27 27 C 1.38661 * 120.00247 * 324.56502 * 17 16 14 28 28 H 1.08995 * 109.47159 * 264.05570 * 1 2 3 29 29 H 1.08997 * 109.46948 * 24.06149 * 1 2 3 30 30 H 1.09005 * 109.46932 * 144.06148 * 1 2 3 31 31 H 1.08996 * 109.47282 * 30.00002 * 3 2 1 32 32 H 1.09007 * 109.47215 * 149.99504 * 3 2 1 33 33 H 0.97002 * 119.99612 * 180.02562 * 7 6 4 34 34 H 0.97008 * 120.00002 * 5.10188 * 16 14 12 35 35 H 1.08000 * 119.89688 * 0.03500 * 18 17 16 36 36 H 1.07992 * 119.89053 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.99452 * 180.27861 * 20 19 18 38 38 H 1.08001 * 122.07272 * 180.22946 * 24 23 22 39 39 H 1.08007 * 125.89235 * 179.76446 * 25 24 23 40 40 H 1.08004 * 120.10850 * 359.95503 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4389 3.4164 -3.4339 9 1 2.3093 4.2595 -3.9010 10 1 4.6995 4.1989 -3.4961 11 1 3.5560 2.2190 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3481 -1.1698 -0.1029 14 6 1.3976 -2.4574 0.1285 15 8 0.1885 -2.4547 0.2343 16 7 2.0713 -3.6248 0.1266 17 6 1.3725 -4.8349 0.1386 18 6 1.8670 -5.9304 -0.5603 19 6 1.1791 -7.1290 -0.5518 20 6 -0.0032 -7.2465 0.1510 21 6 -0.5081 -6.1528 0.8558 22 6 -1.7742 -6.2766 1.6098 23 7 -2.3353 -5.3293 2.3052 24 6 -3.4653 -5.6200 2.9074 25 6 -3.9078 -6.8712 2.7440 26 16 -2.7620 -7.7313 1.7174 27 6 0.1855 -4.9431 0.8471 28 1 -0.3633 -0.1064 1.0221 29 1 -0.3633 0.9384 -0.4190 30 1 -0.3633 -0.8321 -0.6032 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0310 4.4435 -0.8503 34 1 3.0413 -3.6250 0.1167 35 1 2.7918 -5.8446 -1.1115 36 1 1.5682 -7.9767 -1.0961 37 1 -0.5354 -8.1862 0.1589 38 1 -4.0014 -4.8950 3.5019 39 1 -4.8119 -7.2834 3.1673 40 1 -0.2002 -4.0934 1.3910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338830925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:47 Heat of formation + Delta-G solvation = 3.223895 kcal Electronic energy + Delta-G solvation = -26352.786004 eV Core-core repulsion = 22452.477183 eV Total energy + Delta-G solvation = -3900.308821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.20880 -40.78672 -40.13177 -39.10517 -37.20318 -35.89565 -34.67594 -33.16204 -31.12155 -30.22326 -30.02878 -27.81023 -26.50661 -26.36489 -24.61622 -23.64867 -22.57372 -21.21543 -20.47787 -19.47158 -18.81679 -18.71789 -18.13748 -17.61608 -17.23549 -17.02659 -16.75357 -16.42692 -16.15008 -15.90237 -15.54257 -15.19467 -15.05510 -14.84648 -14.47237 -14.26235 -14.02878 -13.90776 -13.80914 -13.62016 -13.36795 -12.98000 -12.88525 -12.66012 -12.48519 -12.37387 -12.28305 -12.22908 -11.77836 -11.63411 -10.76310 -10.72327 -10.66091 -10.39471 -10.27375 -9.68502 -9.46401 -9.11583 -8.25686 -6.40284 -0.79410 -0.02217 0.26664 0.50985 0.59666 0.69510 1.27959 1.38695 1.40417 1.51676 1.88816 2.11225 2.36308 2.55610 2.79037 3.01431 3.04974 3.25616 3.84693 3.99712 4.10509 4.26890 4.33044 4.36713 4.40447 4.45015 4.51053 4.64739 4.82072 4.85079 4.97276 5.11201 5.12648 5.18626 5.22744 5.33892 5.40932 5.42940 5.67628 5.85703 5.94032 5.97760 6.35476 6.62649 6.69137 6.75278 6.94860 7.29955 8.82134 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.002315 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.344290 B =12090.415530 C =13013.524698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.572 5.572 3 C 0.256 3.744 4 C -0.546 4.546 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.272 1.272 12 C 0.490 3.510 13 O -0.553 6.553 14 C 0.516 3.484 15 O -0.505 6.505 16 N -0.637 5.637 17 C 0.123 3.877 18 C -0.117 4.117 19 C -0.086 4.086 20 C -0.104 4.104 21 C -0.031 4.031 22 C 0.088 3.912 23 N -0.500 5.500 24 C 0.016 3.984 25 C -0.237 4.237 26 S 0.131 5.869 27 C -0.097 4.097 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.013 0.987 33 H 0.269 0.731 34 H 0.431 0.569 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.191 0.809 39 H 0.214 0.786 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.219 -28.339 3.656 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.303 5.303 3 C 0.136 3.864 4 C -0.585 4.585 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.197 1.197 12 C 0.272 3.728 13 O -0.432 6.432 14 C 0.298 3.702 15 O -0.380 6.380 16 N -0.284 5.284 17 C 0.029 3.971 18 C -0.138 4.138 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.035 4.035 22 C -0.186 4.186 23 N -0.214 5.214 24 C -0.135 4.135 25 C -0.376 4.376 26 S 0.386 5.614 27 C -0.121 4.121 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.271 0.729 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.169 0.831 38 H 0.207 0.793 39 H 0.230 0.770 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.136 -28.603 3.399 31.256 hybrid contribution 0.174 1.790 0.122 1.803 sum -11.962 -26.813 3.521 29.570 Atomic orbital electron populations 1.22137 0.77241 1.03654 1.02793 1.48107 1.08933 1.06052 1.67179 1.19063 0.91433 0.78999 0.96908 1.21598 1.37383 1.06943 0.92537 0.92872 1.25828 0.94666 0.96179 1.02114 1.70036 1.38592 1.14752 1.33017 0.85383 0.78112 0.78240 0.78896 1.19052 1.20302 1.19710 1.20130 0.87397 0.85430 0.79892 1.90710 1.14765 1.87244 1.50485 1.20168 0.87352 0.85279 0.77357 1.90721 1.13876 1.86935 1.46424 1.43053 1.11790 1.02858 1.70710 1.17870 0.94370 0.85852 0.98991 1.21480 1.02394 0.91972 0.97905 1.21273 0.93416 0.97738 0.97953 1.21457 0.97105 0.97338 0.96615 1.17857 0.91607 0.94758 0.99277 1.26027 0.99432 0.92385 1.00717 1.66548 1.11205 1.33404 1.10276 1.22050 0.92624 0.97114 1.01714 1.27533 1.06563 0.97452 1.06076 1.84555 1.16110 1.15011 1.45760 1.21258 0.94889 0.97726 0.98205 0.91625 0.90869 0.89333 0.94794 0.96880 0.92175 0.72947 0.82411 0.80585 0.83108 0.79270 0.76953 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.15 9.27 127.77 1.18 4.34 16 2 N -0.57 -26.16 2.86 -852.86 -2.44 -28.60 16 3 C 0.26 13.90 5.09 85.63 0.44 14.33 16 4 C -0.55 -31.50 9.39 25.60 0.24 -31.26 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.67 5.46 84.66 0.46 1.13 16 7 N -0.92 -55.11 13.29 21.45 0.28 -54.82 16 8 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 C 0.49 21.39 7.72 87.24 0.67 22.06 16 13 O -0.55 -26.96 16.12 -3.28 -0.05 -27.01 16 14 C 0.52 18.49 7.61 87.24 0.66 19.15 16 15 O -0.50 -18.81 10.71 -3.32 -0.04 -18.85 16 16 N -0.64 -18.11 5.32 -304.95 -1.62 -19.73 16 17 C 0.12 3.07 6.29 38.17 0.24 3.31 16 18 C -0.12 -1.97 9.96 22.45 0.22 -1.75 16 19 C -0.09 -1.08 10.02 22.21 0.22 -0.85 16 20 C -0.10 -1.62 9.60 22.54 0.22 -1.40 16 21 C -0.03 -0.71 5.87 -20.11 -0.12 -0.83 16 22 C 0.09 2.05 7.35 87.49 0.64 2.69 16 23 N -0.50 -13.32 10.14 -189.84 -1.92 -15.24 16 24 C 0.02 0.30 11.25 83.74 0.94 1.25 16 25 C -0.24 -3.22 11.35 66.79 0.76 -2.47 16 26 S 0.13 1.92 22.39 -56.49 -1.26 0.65 16 27 C -0.10 -2.74 8.32 22.66 0.19 -2.56 16 28 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 29 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 30 H 0.09 3.24 5.85 -2.38 -0.01 3.22 16 31 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.01 0.79 7.51 -2.38 -0.02 0.77 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.43 10.82 8.30 -92.70 -0.77 10.05 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.15 1.50 7.29 -2.91 -0.02 1.48 16 38 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.21 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.12 4.25 5.99 -2.91 -0.02 4.23 16 Total: -1.00 -75.92 363.73 2.29 -73.64 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.34 Total: 16.20 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 6.98 Total: 27.14 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -5.70 Total: -118.39 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -0.09 Total: -45.86 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.26 Total: 0.65 kcal Total: -75.92 2.29 -73.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338830925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.860 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds