Wall clock time and date at job start Wed Apr 1 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99902 * 2 1 4 4 C 1.50703 * 109.47070 * 269.99936 * 3 2 1 5 5 H 1.08001 * 119.99803 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00089 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00323 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00077 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47245 * 89.99795 * 8 6 4 10 10 H 1.48498 * 109.47341 * 210.00031 * 8 6 4 11 11 H 1.48495 * 109.47107 * 330.00135 * 8 6 4 12 12 C 1.34774 * 120.00162 * 180.02562 * 2 1 3 13 13 O 1.21365 * 120.00251 * 183.62363 * 12 2 1 14 14 C 1.49310 * 120.00037 * 3.62013 * 12 2 1 15 15 O 1.21393 * 119.99784 * 354.17380 * 14 12 2 16 16 N 1.34770 * 120.00383 * 174.16915 * 14 12 2 17 17 C 1.39179 * 120.00563 * 180.02562 * 16 14 12 18 18 C 1.35718 * 127.16371 * 180.33632 * 17 16 14 19 19 C 1.38637 * 114.55194 * 180.19669 * 18 17 16 20 20 C 1.48390 * 121.71528 * 179.76630 * 19 18 17 21 21 C 1.39334 * 120.12406 * 359.46085 * 20 19 18 22 22 C 1.38026 * 119.87710 * 179.77174 * 21 20 19 23 23 C 1.38319 * 120.11899 * 0.50584 * 22 21 20 24 24 C 1.38320 * 120.24429 * 359.74703 * 23 22 21 25 25 C 1.38017 * 120.12504 * 359.97438 * 24 23 22 26 26 N 1.30883 * 116.56117 * 359.48997 * 19 18 17 27 27 S 1.69548 * 107.29660 * 0.27624 * 26 19 18 28 28 H 1.09001 * 109.47133 * 263.99367 * 1 2 3 29 29 H 1.09004 * 109.47194 * 23.99700 * 1 2 3 30 30 H 1.08997 * 109.47010 * 143.99341 * 1 2 3 31 31 H 1.08998 * 109.47598 * 29.99875 * 3 2 1 32 32 H 1.08998 * 109.47116 * 150.00017 * 3 2 1 33 33 H 0.96998 * 120.00435 * 179.97438 * 7 6 4 34 34 H 0.97006 * 120.00105 * 359.97438 * 16 14 12 35 35 H 1.08007 * 122.72608 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.06190 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.93661 * 180.27499 * 22 21 20 38 38 H 1.08000 * 119.87610 * 179.72613 * 23 22 21 39 39 H 1.08004 * 119.93337 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.06116 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3465 3.2569 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1069 3.5069 0.1237 10 1 3.7498 5.3554 -0.6649 11 1 2.8273 3.7597 0.9109 12 6 2.1389 -1.1672 -0.0005 13 8 3.3508 -1.1683 0.0659 14 6 1.3947 -2.4589 -0.0827 15 8 0.1814 -2.4640 -0.0424 16 7 2.0697 -3.6193 -0.2018 17 6 1.3760 -4.8233 -0.2790 18 6 1.9044 -6.0681 -0.3938 19 6 0.9677 -7.0884 -0.4537 20 6 1.3704 -8.5105 -0.5851 21 6 2.7193 -8.8509 -0.6629 22 6 3.0884 -10.1758 -0.7803 23 6 2.1217 -11.1637 -0.8311 24 6 0.7810 -10.8310 -0.7595 25 6 0.4008 -9.5099 -0.6363 26 7 -0.2900 -6.7330 -0.3829 27 16 -0.3294 -5.0439 -0.2413 28 1 -0.3633 -0.1075 1.0220 29 1 -0.3634 0.9389 -0.4180 30 1 -0.3633 -0.8313 -0.6041 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8234 4.0827 -3.0901 34 1 3.0392 -3.6152 -0.2344 35 1 2.9683 -6.2490 -0.4387 36 1 3.4748 -8.0799 -0.6282 37 1 4.1338 -10.4411 -0.8362 38 1 2.4147 -12.1987 -0.9274 39 1 0.0304 -11.6065 -0.7993 40 1 -0.6463 -9.2513 -0.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338837362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:51 Heat of formation + Delta-G solvation = 21.458581 kcal Electronic energy + Delta-G solvation = -25869.732555 eV Core-core repulsion = 21970.214449 eV Total energy + Delta-G solvation = -3899.518106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.00175 -40.02697 -38.61835 -38.06311 -36.06746 -34.80241 -32.63467 -31.45665 -31.37082 -30.21973 -28.87118 -26.62799 -25.54822 -24.44468 -22.99195 -22.32548 -21.92103 -20.61870 -19.44951 -18.36016 -17.56132 -17.24963 -17.15931 -16.65749 -16.14299 -15.95928 -15.44420 -15.31739 -14.79296 -14.77419 -14.38860 -14.24002 -13.96922 -13.75353 -13.43438 -13.17345 -12.93519 -12.66131 -12.49356 -12.36434 -11.84699 -11.73988 -11.69883 -11.57428 -11.32409 -11.23289 -10.94815 -10.65766 -10.40614 -10.26137 -9.68570 -9.65943 -9.25553 -9.21693 -8.80569 -8.72453 -8.35682 -8.03979 -6.21872 -4.23545 0.25791 0.82550 1.04359 1.10250 1.61417 1.71446 2.24767 2.45294 3.20370 3.26265 3.28038 3.35322 3.61429 3.65132 4.27157 4.28060 4.42475 4.57175 4.66820 4.77909 4.92246 5.07433 5.10197 5.12523 5.25751 5.30333 5.60824 5.67335 5.73606 5.81562 5.90968 6.04758 6.14207 6.19346 6.33558 6.35602 6.58031 6.62808 6.63954 6.68638 6.91617 7.36154 7.42156 7.78625 8.19253 8.39058 8.79546 9.35653 10.90843 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.002089 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.524306 B =13403.421678 C =14046.023648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.552 5.552 3 C 0.212 3.788 4 C -0.538 4.538 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.505 3.495 13 O -0.519 6.519 14 C 0.504 3.496 15 O -0.482 6.482 16 N -0.603 5.603 17 C 0.053 3.947 18 C -0.252 4.252 19 C 0.178 3.822 20 C -0.029 4.029 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.082 4.082 26 N -0.496 5.496 27 S 0.365 5.635 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.267 0.733 34 H 0.433 0.567 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 -24.648 6.572 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.282 5.282 3 C 0.092 3.908 4 C -0.576 4.576 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.703 3.297 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.285 3.715 13 O -0.396 6.396 14 C 0.287 3.713 15 O -0.354 6.354 16 N -0.249 5.249 17 C -0.175 4.175 18 C -0.290 4.290 19 C 0.005 3.995 20 C -0.034 4.034 21 C -0.114 4.114 22 C -0.141 4.141 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.102 4.102 26 N -0.322 5.322 27 S 0.516 5.484 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.273 0.727 35 H 0.177 0.823 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.564 -23.931 6.637 25.688 hybrid contribution 2.798 0.354 0.375 2.845 sum -3.767 -23.577 7.012 24.885 Atomic orbital electron populations 1.22311 0.78751 1.04642 1.02071 1.47801 1.07902 1.05949 1.66572 1.19952 0.92753 0.78956 0.99127 1.21230 1.37895 1.07785 0.90738 0.90526 1.24841 0.95012 0.97200 0.95732 1.69883 1.40787 1.23518 1.18685 0.86843 0.80154 0.79946 0.82733 1.19742 1.20841 1.18954 1.19111 0.87344 0.83871 0.81190 1.90769 1.12761 1.86354 1.49700 1.21300 0.87929 0.85737 0.76295 1.90651 1.13471 1.85451 1.45843 1.42542 1.11940 1.01863 1.68604 1.22759 1.02065 0.89442 1.03194 1.20755 1.03022 0.88877 1.16306 1.19380 0.88251 0.94105 0.97775 1.18176 0.93511 0.88984 1.02691 1.21258 0.94776 0.96823 0.98568 1.21089 0.99764 0.92526 1.00722 1.21286 0.93128 0.99524 0.98993 1.21140 0.96285 0.96137 1.00726 1.21307 0.99870 0.92033 0.97021 1.76672 1.20578 1.08128 1.26783 1.84969 0.97325 1.00169 1.65896 0.92768 0.90500 0.88703 0.94105 0.93878 0.92297 0.72667 0.82322 0.85340 0.85554 0.85893 0.85679 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 9.55 59.85 0.57 1.62 16 2 N -0.55 -10.99 2.86 -183.52 -0.52 -11.52 16 3 C 0.21 4.88 4.23 -5.19 -0.02 4.86 16 4 C -0.54 -14.74 9.94 -34.44 -0.34 -15.08 16 5 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 8 Si 0.88 20.50 27.47 -169.99 -4.67 15.83 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 12 C 0.51 9.63 7.73 -11.65 -0.09 9.54 16 13 O -0.52 -11.05 16.05 5.48 0.09 -10.97 16 14 C 0.50 7.89 7.73 -11.65 -0.09 7.80 16 15 O -0.48 -7.56 10.86 5.46 0.06 -7.50 16 16 N -0.60 -7.88 5.40 -11.88 -0.06 -7.94 16 17 C 0.05 0.66 7.25 -15.11 -0.11 0.55 16 18 C -0.25 -2.78 9.58 -40.34 -0.39 -3.16 16 19 C 0.18 2.12 6.64 -83.94 -0.56 1.56 16 20 C -0.03 -0.30 5.88 -104.90 -0.62 -0.92 16 21 C -0.09 -0.78 9.47 -39.25 -0.37 -1.16 16 22 C -0.12 -0.87 10.03 -39.63 -0.40 -1.27 16 23 C -0.11 -0.76 10.04 -39.52 -0.40 -1.15 16 24 C -0.12 -0.95 10.03 -39.63 -0.40 -1.35 16 25 C -0.08 -0.79 9.61 -39.25 -0.38 -1.17 16 26 N -0.50 -6.52 11.34 32.13 0.36 -6.15 16 27 S 0.36 4.79 21.03 -107.50 -2.26 2.53 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 30 H 0.09 1.50 5.35 -51.94 -0.28 1.23 16 31 H 0.04 0.89 7.13 -51.93 -0.37 0.52 16 32 H 0.04 1.03 6.80 -51.93 -0.35 0.68 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.43 4.95 8.30 -40.82 -0.34 4.61 16 35 H 0.16 1.31 6.59 -52.48 -0.35 0.97 16 36 H 0.13 0.85 6.45 -52.48 -0.34 0.51 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.13 1.28 7.64 -52.49 -0.40 0.88 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -32.13 357.87 -8.64 -40.77 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.12 Total: 2.58 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.68 Total: 2.69 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.55 Total: -51.32 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.15 Total: -18.47 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.26 Total: 2.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.13 -8.64 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338837362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.228 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds