Wall clock time and date at job start Wed Apr 1 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99902 * 2 1 4 4 C 1.50703 * 109.47070 * 269.99936 * 3 2 1 5 5 H 1.08001 * 119.99803 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00089 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00323 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00077 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47245 * 89.99795 * 8 6 4 10 10 H 1.48498 * 109.47341 * 210.00031 * 8 6 4 11 11 H 1.48495 * 109.47107 * 330.00135 * 8 6 4 12 12 C 1.34774 * 120.00162 * 180.02562 * 2 1 3 13 13 O 1.21365 * 120.00251 * 183.62363 * 12 2 1 14 14 C 1.49310 * 120.00037 * 3.62013 * 12 2 1 15 15 O 1.21393 * 119.99784 * 354.17380 * 14 12 2 16 16 N 1.34770 * 120.00383 * 174.16915 * 14 12 2 17 17 C 1.39179 * 120.00563 * 180.02562 * 16 14 12 18 18 C 1.35718 * 127.16371 * 180.33632 * 17 16 14 19 19 C 1.38637 * 114.55194 * 180.19669 * 18 17 16 20 20 C 1.48390 * 121.71528 * 179.76630 * 19 18 17 21 21 C 1.39334 * 120.12406 * 359.46085 * 20 19 18 22 22 C 1.38026 * 119.87710 * 179.77174 * 21 20 19 23 23 C 1.38319 * 120.11899 * 0.50584 * 22 21 20 24 24 C 1.38320 * 120.24429 * 359.74703 * 23 22 21 25 25 C 1.38017 * 120.12504 * 359.97438 * 24 23 22 26 26 N 1.30883 * 116.56117 * 359.48997 * 19 18 17 27 27 S 1.69548 * 107.29660 * 0.27624 * 26 19 18 28 28 H 1.09001 * 109.47133 * 263.99367 * 1 2 3 29 29 H 1.09004 * 109.47194 * 23.99700 * 1 2 3 30 30 H 1.08997 * 109.47010 * 143.99341 * 1 2 3 31 31 H 1.08998 * 109.47598 * 29.99875 * 3 2 1 32 32 H 1.08998 * 109.47116 * 150.00017 * 3 2 1 33 33 H 0.96998 * 120.00435 * 179.97438 * 7 6 4 34 34 H 0.97006 * 120.00105 * 359.97438 * 16 14 12 35 35 H 1.08007 * 122.72608 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.06190 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.93661 * 180.27499 * 22 21 20 38 38 H 1.08000 * 119.87610 * 179.72613 * 23 22 21 39 39 H 1.08004 * 119.93337 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.06116 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3465 3.2569 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1069 3.5069 0.1237 10 1 3.7498 5.3554 -0.6649 11 1 2.8273 3.7597 0.9109 12 6 2.1389 -1.1672 -0.0005 13 8 3.3508 -1.1683 0.0659 14 6 1.3947 -2.4589 -0.0827 15 8 0.1814 -2.4640 -0.0424 16 7 2.0697 -3.6193 -0.2018 17 6 1.3760 -4.8233 -0.2790 18 6 1.9044 -6.0681 -0.3938 19 6 0.9677 -7.0884 -0.4537 20 6 1.3704 -8.5105 -0.5851 21 6 2.7193 -8.8509 -0.6629 22 6 3.0884 -10.1758 -0.7803 23 6 2.1217 -11.1637 -0.8311 24 6 0.7810 -10.8310 -0.7595 25 6 0.4008 -9.5099 -0.6363 26 7 -0.2900 -6.7330 -0.3829 27 16 -0.3294 -5.0439 -0.2413 28 1 -0.3633 -0.1075 1.0220 29 1 -0.3634 0.9389 -0.4180 30 1 -0.3633 -0.8313 -0.6041 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8234 4.0827 -3.0901 34 1 3.0392 -3.6152 -0.2344 35 1 2.9683 -6.2490 -0.4387 36 1 3.4748 -8.0799 -0.6282 37 1 4.1338 -10.4411 -0.8362 38 1 2.4147 -12.1987 -0.9274 39 1 0.0304 -11.6065 -0.7993 40 1 -0.6463 -9.2513 -0.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338837362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:50 Heat of formation + Delta-G solvation = 0.685703 kcal Electronic energy + Delta-G solvation = -25870.633334 eV Core-core repulsion = 21970.214449 eV Total energy + Delta-G solvation = -3900.418885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.28651 -40.84335 -39.93894 -38.96451 -37.41826 -36.17044 -34.67729 -32.15113 -32.04484 -31.16384 -30.69665 -27.97225 -26.80825 -25.64446 -24.06970 -23.41429 -22.82157 -21.78125 -20.56072 -19.47751 -19.20822 -18.79410 -18.04885 -17.86712 -17.44367 -17.10574 -16.80679 -16.24340 -16.11494 -15.87668 -15.45914 -15.28643 -15.03229 -14.96785 -14.46375 -14.35430 -14.04268 -13.95835 -13.78535 -13.65675 -13.51473 -13.12675 -12.76655 -12.53641 -12.48999 -12.38677 -12.31634 -12.02479 -11.91070 -11.76576 -11.39283 -10.84686 -10.60187 -10.44934 -9.86260 -9.84081 -9.63053 -9.19521 -8.35502 -6.43314 -0.71065 -0.06013 0.06328 0.47543 0.51278 0.66648 1.07584 1.36993 1.39236 1.48092 1.59856 1.96718 2.30511 2.32068 2.97434 2.97684 3.05869 3.45984 3.98033 3.99586 4.13359 4.15645 4.28261 4.38528 4.41464 4.57894 4.60155 4.62669 4.68122 4.78787 4.83420 5.03637 5.08148 5.16347 5.27039 5.32688 5.37377 5.50572 5.56929 5.61645 5.79262 6.06073 6.06569 6.19621 6.33932 6.58451 6.77276 7.20925 8.80832 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.002089 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.524306 B =13403.421678 C =14046.023648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.563 5.563 3 C 0.219 3.781 4 C -0.544 4.544 5 H 0.030 0.970 6 C 0.014 3.986 7 N -0.941 5.941 8 Si 0.948 3.052 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.235 1.235 12 C 0.501 3.499 13 O -0.547 6.547 14 C 0.513 3.487 15 O -0.484 6.484 16 N -0.590 5.590 17 C 0.040 3.960 18 C -0.235 4.235 19 C 0.176 3.824 20 C -0.056 4.056 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.099 4.099 26 N -0.510 5.510 27 S 0.335 5.665 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.270 0.730 34 H 0.441 0.559 35 H 0.190 0.810 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -26.460 8.230 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.293 5.293 3 C 0.098 3.902 4 C -0.582 4.582 5 H 0.049 0.951 6 C -0.184 4.184 7 N -0.581 5.581 8 Si 0.770 3.230 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.158 1.158 12 C 0.282 3.718 13 O -0.426 6.426 14 C 0.295 3.705 15 O -0.356 6.356 16 N -0.237 5.237 17 C -0.186 4.186 18 C -0.272 4.272 19 C 0.003 3.997 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.119 4.119 26 N -0.335 5.335 27 S 0.487 5.513 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.283 0.717 35 H 0.207 0.793 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.704 -25.789 8.305 27.687 hybrid contribution 2.529 0.647 -0.241 2.621 sum -3.175 -25.142 8.064 26.594 Atomic orbital electron populations 1.22465 0.76628 1.04687 1.03807 1.47852 1.09251 1.05411 1.66831 1.19682 0.93409 0.80941 0.96186 1.21444 1.37520 1.07336 0.91940 0.95114 1.25842 0.95100 0.98778 0.98725 1.70040 1.42192 1.24436 1.21393 0.85710 0.79860 0.77670 0.79731 1.19606 1.20347 1.15806 1.19609 0.87224 0.84889 0.80086 1.90740 1.14052 1.87086 1.50697 1.20470 0.87595 0.85274 0.77153 1.90658 1.13222 1.85450 1.46301 1.42267 1.12201 1.01323 1.67928 1.22767 1.01622 0.89513 1.04716 1.21054 1.04398 0.87804 1.13904 1.19813 0.87940 0.95353 0.96594 1.18302 0.94726 0.88058 1.04983 1.21508 0.94128 0.98102 0.97988 1.21463 1.01259 0.91938 0.99590 1.21686 0.92615 1.01010 0.97178 1.21403 0.97491 0.95674 1.00180 1.21367 0.99395 0.93096 0.98034 1.76727 1.21544 1.07543 1.27722 1.84979 0.98479 1.00944 1.66919 0.90107 0.90664 0.88475 0.91939 0.94431 0.92097 0.71721 0.79335 0.83734 0.82939 0.83149 0.83810 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 9.55 127.77 1.22 3.29 16 2 N -0.56 -22.28 2.86 -852.89 -2.44 -24.71 16 3 C 0.22 9.96 4.23 85.63 0.36 10.32 16 4 C -0.54 -30.47 9.94 25.60 0.25 -30.21 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.81 5.47 84.65 0.46 1.27 16 7 N -0.94 -57.48 13.96 21.45 0.30 -57.18 16 8 Si 0.95 41.83 27.47 68.60 1.88 43.72 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 12 C 0.50 19.08 7.73 87.23 0.67 19.75 16 13 O -0.55 -23.42 16.05 -3.29 -0.05 -23.47 16 14 C 0.51 15.87 7.73 87.23 0.67 16.55 16 15 O -0.48 -14.98 10.86 -3.38 -0.04 -15.01 16 16 N -0.59 -14.98 5.40 -309.86 -1.67 -16.66 16 17 C 0.04 0.98 7.25 82.94 0.60 1.58 16 18 C -0.23 -4.81 9.58 21.78 0.21 -4.60 16 19 C 0.18 4.06 6.64 42.09 0.28 4.34 16 20 C -0.06 -1.09 5.88 -20.04 -0.12 -1.21 16 21 C -0.10 -1.38 9.47 22.48 0.21 -1.17 16 22 C -0.12 -1.36 10.03 22.24 0.22 -1.13 16 23 C -0.11 -1.12 10.04 22.31 0.22 -0.89 16 24 C -0.13 -1.73 10.03 22.24 0.22 -1.50 16 25 C -0.10 -1.83 9.61 22.48 0.22 -1.61 16 26 N -0.51 -13.48 11.34 -52.26 -0.59 -14.07 16 27 S 0.33 8.83 21.03 -56.49 -1.19 7.65 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 2.38 8.03 -2.38 -0.02 2.36 16 30 H 0.10 3.04 5.35 -2.51 -0.01 3.03 16 31 H 0.06 2.58 7.13 -2.39 -0.02 2.56 16 32 H 0.04 1.76 6.80 -2.39 -0.02 1.75 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.44 9.67 8.30 -92.70 -0.77 8.90 16 35 H 0.19 2.59 6.59 -2.91 -0.02 2.57 16 36 H 0.14 1.47 6.45 -2.91 -0.02 1.45 16 37 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.12 2.41 7.64 -2.91 -0.02 2.39 16 Total: -1.00 -71.77 357.87 2.21 -69.56 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.29 Total: 15.41 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 5.72 Total: 14.77 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.40 Total: -112.62 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.09 Total: -38.48 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Atomic # 16 Polarization: 8.83 SS G_CDS: -1.19 Total: 7.65 kcal Total: -71.77 2.21 -69.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338837362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.245 kcal (2) G-P(sol) polarization free energy of solvation -71.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds