Wall clock time and date at job start Wed Apr 1 2020 02:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35990 * 117.00329 * 2 1 4 4 C 1.39051 * 120.78689 * 179.97438 * 3 2 1 5 5 N 1.32277 * 119.12154 * 180.02562 * 4 3 2 6 6 C 1.32370 * 120.80472 * 0.02562 * 5 4 3 7 7 N 1.39032 * 119.14169 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.34770 * 119.99895 * 179.97438 * 7 6 5 10 10 O 1.21545 * 120.00646 * 354.73807 * 9 7 6 11 11 C 1.47824 * 120.00030 * 174.73454 * 9 7 6 12 12 C 1.39695 * 120.09838 * 335.43624 * 11 9 7 13 13 C 1.38032 * 120.03435 * 179.97438 * 12 11 9 14 14 C 1.38190 * 120.24501 * 359.75878 * 13 12 11 15 15 C 1.39174 * 120.20402 * 0.51833 * 14 13 12 16 16 S 1.76202 * 120.01983 * 179.73971 * 15 14 13 17 17 C 1.76203 * 100.00066 * 265.71519 * 16 15 14 18 18 H 1.07995 * 119.99764 * 5.20616 * 17 16 15 19 19 C 1.38725 * 120.00044 * 185.21349 * 17 16 15 20 20 N 1.31629 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99908 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47338 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47278 * 119.99846 * 21 19 17 24 24 H 1.48504 * 109.47235 * 239.99580 * 21 19 17 25 25 C 1.38867 * 119.96440 * 359.46357 * 15 14 13 26 26 N 1.32376 * 121.72001 * 0.25205 * 6 5 4 27 27 C 1.32276 * 120.80080 * 359.48469 * 26 6 5 28 28 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47384 * 300.00734 * 1 2 3 30 30 H 1.08996 * 109.46490 * 60.00517 * 1 2 3 31 31 H 1.08000 * 120.44016 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.47271 * 275.81617 * 8 7 6 33 33 H 1.09002 * 109.47345 * 35.81964 * 8 7 6 34 34 H 1.09005 * 109.47653 * 155.81747 * 8 7 6 35 35 H 1.08002 * 119.98424 * 359.97438 * 12 11 9 36 36 H 1.08005 * 119.88017 * 180.02562 * 13 12 11 37 37 H 1.08001 * 119.89547 * 180.27769 * 14 13 12 38 38 H 0.96998 * 119.99926 * 180.02562 * 20 19 17 39 39 H 1.08000 * 120.12961 * 180.25376 * 25 15 14 40 40 H 1.07999 * 120.44219 * 180.22876 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4339 1.3034 0.0005 5 7 4.0000 2.4989 0.0010 6 6 3.2626 3.5982 0.0015 7 7 3.8938 4.8369 0.0026 8 6 5.3567 4.9135 0.0026 9 6 3.1598 5.9672 0.0026 10 8 1.9498 5.9062 -0.0948 11 6 3.8262 7.2813 0.1212 12 6 5.0805 7.3784 0.7286 13 6 5.7019 8.6061 0.8382 14 6 5.0900 9.7425 0.3442 15 6 3.8380 9.6582 -0.2577 16 16 3.0593 11.1113 -0.8797 17 6 2.0670 11.5455 0.5101 18 1 2.1520 10.9863 1.4301 19 6 1.1766 12.6057 0.4226 20 7 1.0733 13.2875 -0.6986 21 14 0.1242 13.0656 1.8957 22 1 0.4271 12.1506 3.0254 23 1 0.4197 14.4642 2.2980 24 1 -1.3115 12.9472 1.5348 25 6 3.2052 8.4275 -0.3728 26 7 1.9397 3.5488 0.0065 27 6 1.3052 2.3882 0.0010 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 4.0414 0.4104 0.0014 32 1 5.7251 4.8276 1.0248 33 1 5.7631 4.1009 -0.5996 34 1 5.6706 5.8691 -0.4176 35 1 5.5643 6.4925 1.1126 36 1 6.6717 8.6783 1.3078 37 1 5.5833 10.6995 0.4289 38 1 0.4509 14.0290 -0.7597 39 1 2.2354 8.3584 -0.8431 40 1 0.2257 2.3547 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344336685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:53 Heat of formation + Delta-G solvation = 54.046323 kcal Electronic energy + Delta-G solvation = -26243.623180 eV Core-core repulsion = 22345.518185 eV Total energy + Delta-G solvation = -3898.104995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77214 -40.30734 -38.82164 -37.78406 -35.88429 -34.04017 -32.50975 -31.72797 -30.68940 -30.11300 -28.17591 -27.16747 -25.57743 -25.13323 -24.36397 -22.60843 -22.33810 -20.41873 -18.54334 -18.50172 -18.05582 -17.57506 -16.77650 -16.56604 -16.19840 -15.91244 -15.36271 -14.99171 -14.85099 -14.72141 -14.45960 -14.08200 -13.92247 -13.82802 -13.36797 -13.30138 -13.00590 -12.71647 -12.65542 -12.15526 -12.01304 -11.71396 -11.31393 -11.19501 -11.17719 -11.10319 -11.05713 -10.69552 -10.16913 -10.03528 -9.88826 -9.20896 -9.15562 -8.98318 -8.66929 -8.27525 -8.03350 -6.72622 -6.29173 -4.03270 0.61686 0.76844 1.19722 1.62055 2.19090 2.77565 2.83786 3.18989 3.21814 3.28963 3.45000 3.60273 3.77701 3.99675 4.01406 4.16709 4.22723 4.48268 4.57564 4.71869 4.78166 4.87044 5.05259 5.07401 5.13350 5.18254 5.25381 5.29273 5.46409 5.47920 5.59042 5.66905 5.82356 5.90912 6.20851 6.24231 6.42863 6.52240 6.59801 6.78462 6.89950 6.94302 7.15249 7.58082 7.90430 8.07422 8.33131 9.17166 10.77613 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.002499 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.722511 B =11202.014023 C =12550.509729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.306 6.306 3 C -0.018 4.018 4 C 0.157 3.843 5 N -0.512 5.512 6 C 0.510 3.490 7 N -0.531 5.531 8 C 0.069 3.931 9 C 0.559 3.441 10 O -0.462 6.462 11 C -0.151 4.151 12 C -0.107 4.107 13 C -0.141 4.141 14 C -0.053 4.053 15 C -0.106 4.106 16 S -0.034 6.034 17 C -0.518 4.518 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.017 4.017 26 N -0.469 5.469 27 C 0.102 3.898 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.180 0.820 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.269 0.731 39 H 0.138 0.862 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -24.634 1.923 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.217 6.217 3 C -0.069 4.069 4 C -0.012 4.012 5 N -0.232 5.232 6 C 0.156 3.844 7 N -0.262 5.262 8 C -0.072 4.072 9 C 0.348 3.652 10 O -0.330 6.330 11 C -0.156 4.156 12 C -0.126 4.126 13 C -0.160 4.160 14 C -0.074 4.074 15 C -0.217 4.217 16 S 0.200 5.800 17 C -0.666 4.666 18 H 0.095 0.905 19 C -0.136 4.136 20 N -0.506 5.506 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.038 4.038 26 N -0.188 5.188 27 C -0.067 4.067 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.197 0.803 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.079 0.921 39 H 0.155 0.845 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.749 -23.101 0.733 24.078 hybrid contribution -1.428 -1.121 2.101 2.776 sum 5.322 -24.222 2.833 24.961 Atomic orbital electron populations 1.23155 0.77876 1.04539 1.01752 1.86079 1.21670 1.24863 1.89126 1.20709 0.94996 0.86808 1.04411 1.22401 0.89465 0.95045 0.94288 1.67861 1.39760 0.97460 1.18102 1.19351 0.85303 0.85933 0.93819 1.45151 1.08532 1.01853 1.70615 1.22569 0.76724 1.05024 1.02918 1.18749 0.86916 0.83092 0.76444 1.90885 1.13072 1.85753 1.43260 1.19619 0.96800 0.92020 1.07202 1.21910 0.93719 0.98784 0.98140 1.21108 1.00556 0.92375 1.02006 1.22001 0.94129 0.98534 0.92706 1.22835 0.97428 1.00145 1.01279 1.83607 1.52341 1.20184 1.23868 1.22883 1.26025 1.19391 0.98280 0.90519 1.25004 0.96166 0.95347 0.97076 1.69996 1.35726 1.19660 1.25205 0.86065 0.79593 0.78350 0.81303 1.19465 1.20477 1.20425 1.21904 0.98475 0.89913 0.93557 1.68401 1.08275 1.27855 1.14268 1.23431 1.01243 0.86128 0.95879 0.87684 0.92327 0.92288 0.80317 0.91092 0.89718 0.88011 0.84425 0.85635 0.84981 0.92108 0.84456 0.81048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.48 10.52 -19.71 -0.21 -2.69 16 3 C -0.02 -0.18 6.73 -38.98 -0.26 -0.44 16 4 C 0.16 1.51 11.26 -17.06 -0.19 1.32 16 5 N -0.51 -6.16 9.22 -13.71 -0.13 -6.29 16 6 C 0.51 7.48 8.13 -322.20 -2.62 4.86 16 7 N -0.53 -7.65 3.08 -125.86 -0.39 -8.03 16 8 C 0.07 0.68 8.33 59.84 0.50 1.18 16 9 C 0.56 9.76 7.45 -12.34 -0.09 9.67 16 10 O -0.46 -9.65 14.82 5.33 0.08 -9.57 16 11 C -0.15 -2.57 5.49 -105.00 -0.58 -3.15 16 12 C -0.11 -1.46 7.53 -39.11 -0.29 -1.75 16 13 C -0.14 -1.94 10.02 -39.67 -0.40 -2.34 16 14 C -0.05 -0.92 9.79 -39.25 -0.38 -1.30 16 15 C -0.11 -2.24 5.45 -39.00 -0.21 -2.45 16 16 S -0.03 -0.88 21.41 -107.50 -2.30 -3.19 16 17 C -0.52 -14.65 9.46 30.91 0.29 -14.36 16 18 H 0.08 2.17 7.79 -52.49 -0.41 1.76 16 19 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 20 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 21 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 26 N -0.47 -7.32 7.88 -13.71 -0.11 -7.43 16 27 C 0.10 1.18 10.30 -17.06 -0.18 1.01 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 30 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 31 H 0.18 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.07 0.57 7.13 -51.93 -0.37 0.20 16 33 H 0.08 0.75 7.54 -51.93 -0.39 0.36 16 34 H 0.10 0.96 5.12 -51.93 -0.27 0.69 16 35 H 0.14 1.40 4.43 -52.49 -0.23 1.17 16 36 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.14 2.98 7.84 -52.49 -0.41 2.57 16 40 H 0.17 1.50 6.46 -52.49 -0.34 1.16 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -35.58 357.99 -9.87 -45.45 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.05 Total: -0.10 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -3.88 Total: -5.41 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.11 Total: -46.49 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.13 Total: -12.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.58 -9.87 -45.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344336685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.501 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds