Wall clock time and date at job start Wed Apr 1 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35990 * 117.00329 * 2 1 4 4 C 1.39051 * 120.78689 * 179.97438 * 3 2 1 5 5 N 1.32277 * 119.12154 * 180.02562 * 4 3 2 6 6 C 1.32370 * 120.80472 * 0.02562 * 5 4 3 7 7 N 1.39032 * 119.14169 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.34770 * 119.99895 * 179.97438 * 7 6 5 10 10 O 1.21545 * 120.00646 * 354.73807 * 9 7 6 11 11 C 1.47824 * 120.00030 * 174.73454 * 9 7 6 12 12 C 1.39695 * 120.09838 * 335.43624 * 11 9 7 13 13 C 1.38032 * 120.03435 * 179.97438 * 12 11 9 14 14 C 1.38190 * 120.24501 * 359.75878 * 13 12 11 15 15 C 1.39174 * 120.20402 * 0.51833 * 14 13 12 16 16 S 1.76202 * 120.01983 * 179.73971 * 15 14 13 17 17 C 1.76203 * 100.00066 * 265.71519 * 16 15 14 18 18 H 1.07995 * 119.99764 * 5.20616 * 17 16 15 19 19 C 1.38725 * 120.00044 * 185.21349 * 17 16 15 20 20 N 1.31629 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99908 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47338 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47278 * 119.99846 * 21 19 17 24 24 H 1.48504 * 109.47235 * 239.99580 * 21 19 17 25 25 C 1.38867 * 119.96440 * 359.46357 * 15 14 13 26 26 N 1.32376 * 121.72001 * 0.25205 * 6 5 4 27 27 C 1.32276 * 120.80080 * 359.48469 * 26 6 5 28 28 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47384 * 300.00734 * 1 2 3 30 30 H 1.08996 * 109.46490 * 60.00517 * 1 2 3 31 31 H 1.08000 * 120.44016 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.47271 * 275.81617 * 8 7 6 33 33 H 1.09002 * 109.47345 * 35.81964 * 8 7 6 34 34 H 1.09005 * 109.47653 * 155.81747 * 8 7 6 35 35 H 1.08002 * 119.98424 * 359.97438 * 12 11 9 36 36 H 1.08005 * 119.88017 * 180.02562 * 13 12 11 37 37 H 1.08001 * 119.89547 * 180.27769 * 14 13 12 38 38 H 0.96998 * 119.99926 * 180.02562 * 20 19 17 39 39 H 1.08000 * 120.12961 * 180.25376 * 25 15 14 40 40 H 1.07999 * 120.44219 * 180.22876 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4339 1.3034 0.0005 5 7 4.0000 2.4989 0.0010 6 6 3.2626 3.5982 0.0015 7 7 3.8938 4.8369 0.0026 8 6 5.3567 4.9135 0.0026 9 6 3.1598 5.9672 0.0026 10 8 1.9498 5.9062 -0.0948 11 6 3.8262 7.2813 0.1212 12 6 5.0805 7.3784 0.7286 13 6 5.7019 8.6061 0.8382 14 6 5.0900 9.7425 0.3442 15 6 3.8380 9.6582 -0.2577 16 16 3.0593 11.1113 -0.8797 17 6 2.0670 11.5455 0.5101 18 1 2.1520 10.9863 1.4301 19 6 1.1766 12.6057 0.4226 20 7 1.0733 13.2875 -0.6986 21 14 0.1242 13.0656 1.8957 22 1 0.4271 12.1506 3.0254 23 1 0.4197 14.4642 2.2980 24 1 -1.3115 12.9472 1.5348 25 6 3.2052 8.4275 -0.3728 26 7 1.9397 3.5488 0.0065 27 6 1.3052 2.3882 0.0010 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 4.0414 0.4104 0.0014 32 1 5.7251 4.8276 1.0248 33 1 5.7631 4.1009 -0.5996 34 1 5.6706 5.8691 -0.4176 35 1 5.5643 6.4925 1.1126 36 1 6.6717 8.6783 1.3078 37 1 5.5833 10.6995 0.4289 38 1 0.4509 14.0290 -0.7597 39 1 2.2354 8.3584 -0.8431 40 1 0.2257 2.3547 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344336685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:52 Heat of formation + Delta-G solvation = 32.332105 kcal Electronic energy + Delta-G solvation = -26244.564779 eV Core-core repulsion = 22345.518185 eV Total energy + Delta-G solvation = -3899.046594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.71448 -41.41532 -39.69449 -39.01115 -37.00771 -34.94919 -34.66276 -32.86247 -32.03669 -31.10649 -28.86472 -27.99714 -27.74678 -26.12180 -25.32849 -23.75163 -23.59033 -21.58374 -20.03039 -19.29652 -19.19697 -18.87846 -18.07537 -17.53149 -17.33580 -16.94382 -16.75120 -16.47372 -16.16335 -15.72067 -15.52269 -15.20952 -15.13076 -14.83498 -14.64412 -14.51894 -14.25097 -13.91738 -13.58800 -13.33881 -13.25223 -12.99430 -12.73284 -12.63877 -12.57144 -12.38167 -12.21648 -12.08907 -11.74614 -11.32814 -11.21819 -11.05568 -10.71366 -10.12706 -10.00857 -9.68315 -9.16750 -8.81004 -8.40546 -6.20096 -0.41850 -0.09346 0.01310 0.23172 1.17624 1.28894 1.35049 1.44938 1.57310 1.72688 2.13595 2.22098 2.62223 2.74930 2.89691 2.92625 3.11207 3.33585 3.40185 3.48496 3.78223 3.92703 3.93817 4.20691 4.33392 4.34672 4.35561 4.43066 4.50127 4.57932 4.65224 4.67698 4.76692 4.86973 4.89615 5.14178 5.27531 5.31826 5.37812 5.48026 5.65748 5.78352 5.85716 6.12521 6.15190 6.82031 7.00334 7.00741 8.66660 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.002499 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.722511 B =11202.014023 C =12550.509729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.306 6.306 3 C 0.001 3.999 4 C 0.157 3.843 5 N -0.504 5.504 6 C 0.481 3.519 7 N -0.529 5.529 8 C 0.059 3.941 9 C 0.557 3.443 10 O -0.513 6.513 11 C -0.153 4.153 12 C -0.079 4.079 13 C -0.117 4.117 14 C -0.058 4.058 15 C -0.129 4.129 16 S -0.091 6.091 17 C -0.535 4.535 18 H 0.066 0.934 19 C 0.020 3.980 20 N -0.905 5.905 21 Si 0.991 3.009 22 H -0.268 1.268 23 H -0.264 1.264 24 H -0.273 1.273 25 C -0.040 4.040 26 N -0.515 5.515 27 C 0.084 3.916 28 H 0.130 0.870 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.219 0.781 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.138 0.862 38 H 0.274 0.726 39 H 0.101 0.899 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 -27.710 4.054 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.217 6.217 3 C -0.051 4.051 4 C -0.012 4.012 5 N -0.224 5.224 6 C 0.127 3.873 7 N -0.258 5.258 8 C -0.080 4.080 9 C 0.347 3.653 10 O -0.385 6.385 11 C -0.158 4.158 12 C -0.097 4.097 13 C -0.136 4.136 14 C -0.078 4.078 15 C -0.240 4.240 16 S 0.144 5.856 17 C -0.682 4.682 18 H 0.084 0.916 19 C -0.185 4.185 20 N -0.542 5.542 21 Si 0.813 3.187 22 H -0.192 1.192 23 H -0.189 1.189 24 H -0.198 1.198 25 C -0.062 4.062 26 N -0.235 5.235 27 C -0.083 4.083 28 H 0.148 0.852 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.203 0.797 36 H 0.198 0.802 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.142 -26.226 2.855 27.920 hybrid contribution -2.099 -0.518 1.416 2.584 sum 7.043 -26.744 4.271 27.984 Atomic orbital electron populations 1.23470 0.76051 1.06439 1.02326 1.86098 1.23499 1.23657 1.88437 1.20736 0.95234 0.86852 1.02281 1.23104 0.89940 0.95387 0.92760 1.67919 1.39297 0.97411 1.17731 1.19476 0.85435 0.86570 0.95775 1.45096 1.09913 1.01105 1.69681 1.22892 0.74132 1.05944 1.05042 1.18802 0.86486 0.84028 0.76017 1.90852 1.15209 1.86592 1.45846 1.19636 0.98085 0.90792 1.07265 1.22467 0.91552 1.00608 0.95061 1.21617 1.01914 0.90461 0.99642 1.22137 0.92657 1.00632 0.92423 1.22477 0.99172 0.97696 1.04652 1.83456 1.53202 1.23894 1.25055 1.23091 1.26835 1.19682 0.98617 0.91619 1.25983 0.97323 0.95094 1.00125 1.70109 1.36578 1.20260 1.27246 0.85019 0.77670 0.78544 0.77488 1.19213 1.18861 1.19794 1.21552 0.97833 0.91300 0.95552 1.68305 1.09472 1.30058 1.15688 1.23730 1.02218 0.85980 0.96377 0.85155 0.91728 0.91797 0.76468 0.88215 0.88381 0.87435 0.79697 0.80172 0.84379 0.91684 0.88081 0.79519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.20 16 2 O -0.31 -4.16 10.52 -93.43 -0.98 -5.14 16 3 C 0.00 0.01 6.73 22.66 0.15 0.16 16 4 C 0.16 2.58 11.26 84.82 0.96 3.54 16 5 N -0.50 -10.98 9.22 -197.29 -1.82 -12.80 16 6 C 0.48 13.76 8.13 261.27 2.12 15.89 16 7 N -0.53 -14.62 3.08 -670.39 -2.06 -16.68 16 8 C 0.06 0.96 8.33 127.77 1.06 2.03 16 9 C 0.56 19.85 7.45 86.78 0.65 20.49 16 10 O -0.51 -22.85 14.82 -3.86 -0.06 -22.90 16 11 C -0.15 -5.18 5.49 -20.11 -0.11 -5.29 16 12 C -0.08 -1.87 7.53 22.57 0.17 -1.70 16 13 C -0.12 -2.75 10.02 22.21 0.22 -2.52 16 14 C -0.06 -1.96 9.79 22.48 0.22 -1.74 16 15 C -0.13 -5.67 5.45 22.65 0.12 -5.55 16 16 S -0.09 -4.97 21.41 -56.49 -1.21 -6.18 16 17 C -0.54 -31.76 9.46 67.94 0.64 -31.12 16 18 H 0.07 3.90 7.79 -2.91 -0.02 3.87 16 19 C 0.02 1.16 5.49 84.84 0.47 1.63 16 20 N -0.91 -54.98 13.22 21.64 0.29 -54.70 16 21 Si 0.99 45.39 29.55 68.60 2.03 47.42 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 C -0.04 -1.74 9.34 22.70 0.21 -1.53 16 26 N -0.52 -16.39 7.88 -197.29 -1.55 -17.95 16 27 C 0.08 1.91 10.30 84.82 0.87 2.79 16 28 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.44 7.71 -2.39 -0.02 0.42 16 30 H 0.06 0.44 7.71 -2.39 -0.02 0.43 16 31 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.10 1.07 7.13 -2.39 -0.02 1.06 16 33 H 0.10 1.39 7.54 -2.39 -0.02 1.37 16 34 H 0.11 1.59 5.12 -2.38 -0.01 1.58 16 35 H 0.19 2.67 4.43 -2.91 -0.01 2.65 16 36 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.10 4.95 7.84 -2.91 -0.02 4.92 16 40 H 0.19 3.28 6.46 -2.91 -0.02 3.26 16 Total: -1.00 -85.60 357.99 4.61 -80.99 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.10 Total: 9.65 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 8.88 Total: -1.71 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -5.15 Total: -102.13 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.04 Total: -28.04 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -1.21 Total: -6.18 kcal Total: -85.60 4.61 -80.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344336685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.326 kcal (2) G-P(sol) polarization free energy of solvation -85.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds