Wall clock time and date at job start Wed Apr 1 2020 03:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42103 * 109.46918 * 2 1 4 4 C 1.81401 * 103.00006 * 243.61260 * 2 1 3 5 5 C 1.50693 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.38233 * 120.00207 * 89.99480 * 5 4 2 7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 4 8 8 C 1.38235 * 120.00220 * 0.28719 * 7 6 5 9 9 C 1.50700 * 120.00255 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47359 * 89.99789 * 9 8 7 11 11 S 1.65605 * 119.99954 * 165.00345 * 10 9 8 12 12 O 1.42100 * 104.27587 * 181.06881 * 11 10 9 13 13 O 1.42098 * 104.27304 * 308.92283 * 11 10 9 14 14 C 1.81402 * 104.45084 * 64.99822 * 11 10 9 15 15 C 1.52995 * 109.47103 * 180.02562 * 14 11 10 16 16 C 1.50701 * 109.47262 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99543 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00237 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99821 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00196 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47229 * 89.99592 * 20 18 16 22 22 H 1.48505 * 109.47377 * 209.99500 * 20 18 16 23 23 H 1.48495 * 109.47261 * 329.99906 * 20 18 16 24 24 C 1.38237 * 119.99712 * 359.94731 * 8 7 6 25 25 C 1.38234 * 120.00033 * 0.02562 * 24 8 7 26 26 H 1.09004 * 109.47564 * 176.38899 * 1 2 3 27 27 H 1.09006 * 109.47232 * 296.39050 * 1 2 3 28 28 H 1.09000 * 109.47424 * 56.38175 * 1 2 3 29 29 H 1.09000 * 109.46926 * 60.00128 * 4 2 1 30 30 H 1.09001 * 109.46748 * 299.99932 * 4 2 1 31 31 H 1.08002 * 120.00157 * 0.02562 * 6 5 4 32 32 H 1.07999 * 120.00009 * 180.25939 * 7 6 5 33 33 H 1.09005 * 109.47111 * 209.99797 * 9 8 7 34 34 H 1.09002 * 109.46493 * 329.99148 * 9 8 7 35 35 H 0.96993 * 120.00190 * 344.99453 * 10 9 8 36 36 H 1.09008 * 109.46908 * 299.99835 * 14 11 10 37 37 H 1.08997 * 109.47326 * 59.99531 * 14 11 10 38 38 H 1.09008 * 109.46796 * 299.99527 * 15 14 11 39 39 H 1.08999 * 109.47257 * 59.99162 * 15 14 11 40 40 H 0.96999 * 119.99518 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.99643 * 180.02562 * 24 8 7 42 42 H 1.08003 * 119.99512 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7856 -1.5834 5 6 3.7193 -0.8616 -1.7353 6 6 4.4056 -1.9689 -1.2729 7 6 5.7785 -2.0412 -1.4174 8 6 6.4658 -1.0036 -2.0189 9 6 7.9626 -1.0821 -2.1759 10 7 8.2867 -1.7143 -3.4571 11 16 9.8212 -1.6040 -4.0701 12 8 9.7546 -2.2980 -5.3082 13 8 10.1179 -0.2151 -4.0238 14 6 10.8488 -2.5144 -2.8844 15 6 12.3075 -2.4840 -3.3451 16 6 13.1611 -3.2409 -2.3605 17 1 12.7085 -3.6976 -1.4927 18 6 14.5200 -3.3495 -2.5669 19 7 15.0712 -2.7930 -3.6235 20 14 15.5782 -4.2871 -1.3461 21 1 15.6538 -5.7142 -1.7502 22 1 16.9444 -3.7053 -1.3261 23 1 14.9777 -4.1874 0.0083 24 6 5.7801 0.1059 -2.4769 25 6 4.4071 0.1779 -2.3329 26 1 -0.3634 -1.0256 -0.0647 27 1 -0.3634 0.4568 0.9206 28 1 -0.3634 0.5690 -0.8558 29 1 1.8031 -0.1970 -2.3996 30 1 1.8031 -1.7915 -1.6084 31 1 3.8687 -2.7797 -0.8031 32 1 6.3142 -2.9082 -1.0599 33 1 8.3839 -0.0771 -2.1497 34 1 8.3826 -1.6735 -1.3623 35 1 7.6027 -2.1975 -3.9463 36 1 10.7687 -2.0492 -1.9019 37 1 10.5073 -3.5478 -2.8260 38 1 12.3879 -2.9490 -4.3278 39 1 12.6487 -1.4505 -3.4032 40 1 16.0271 -2.8698 -3.7689 41 1 6.3170 0.9164 -2.9472 42 1 3.8714 1.0446 -2.6912 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352387740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:36 Heat of formation + Delta-G solvation = -129.864954 kcal Electronic energy + Delta-G solvation = -24502.759298 eV Core-core repulsion = 20699.830511 eV Total energy + Delta-G solvation = -3802.928786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.44428 -38.13944 -37.01014 -36.82129 -36.56398 -35.85901 -33.36841 -33.08720 -31.83946 -29.87583 -28.85684 -27.55649 -25.37002 -23.66593 -23.56258 -21.85211 -20.30216 -19.09563 -18.49342 -18.34787 -17.66112 -17.06705 -16.89546 -16.59444 -16.50346 -16.27116 -16.16664 -15.66226 -15.36410 -15.10214 -14.96851 -14.49221 -14.33384 -14.19954 -14.06185 -13.68690 -13.59460 -13.37173 -13.32772 -13.16913 -13.07819 -13.06217 -12.90158 -12.74640 -12.64226 -12.20594 -12.11720 -12.03746 -11.87277 -11.69940 -11.38658 -11.15821 -10.62005 -10.35619 -9.83508 -9.71079 -9.03369 -8.23305 -6.37105 -0.67374 0.08911 0.49739 0.85321 1.43297 1.45109 1.56178 1.77561 1.94335 2.40507 2.82348 2.86001 2.93631 3.10394 3.31580 3.62845 3.78805 3.92077 4.05499 4.12284 4.17875 4.21057 4.30359 4.44744 4.48289 4.54067 4.61961 4.78715 4.79513 4.83323 4.90131 5.11858 5.17033 5.17740 5.31390 5.32590 5.46850 5.60931 5.69026 5.71503 6.08021 6.09017 6.13447 6.77132 7.33071 8.88879 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.001893 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.763442 B =14784.348252 C =15446.354665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.489 4.489 2 S 1.288 4.712 3 O -0.924 6.924 4 C -0.403 4.403 5 C -0.073 4.073 6 C -0.108 4.108 7 C -0.098 4.098 8 C -0.105 4.105 9 C 0.146 3.854 10 N -1.104 6.104 11 S 2.620 3.380 12 O -1.001 7.001 13 O -1.002 7.002 14 C -0.583 4.583 15 C 0.017 3.983 16 C -0.536 4.536 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.256 1.256 24 C -0.117 4.117 25 C -0.139 4.139 26 H 0.152 0.848 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.173 0.827 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.424 0.576 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.266 0.734 41 H 0.113 0.887 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.638 -3.365 11.753 34.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.490 4.510 3 O -0.920 6.920 4 C -0.539 4.539 5 C -0.074 4.074 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.108 4.108 9 C 0.021 3.979 10 N -0.865 5.865 11 S 2.718 3.282 12 O -0.991 6.991 13 O -0.991 6.991 14 C -0.716 4.716 15 C -0.022 4.022 16 C -0.575 4.575 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.179 1.179 24 C -0.136 4.136 25 C -0.158 4.158 26 H 0.170 0.830 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.191 0.809 31 H 0.196 0.804 32 H 0.175 0.825 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.260 0.740 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -31.539 -2.360 11.649 33.704 hybrid contribution -0.076 1.079 -1.683 2.001 sum -31.615 -1.282 9.966 33.173 Atomic orbital electron populations 1.27658 1.19742 1.10466 1.06935 1.69853 0.86544 0.96522 0.98110 1.93046 1.76200 1.40152 1.82608 1.26732 0.96475 1.13205 1.17440 1.19419 0.94080 0.94947 0.98991 1.21536 0.93984 0.97840 0.99260 1.21505 0.94938 0.98054 0.97180 1.19857 0.94551 0.95596 1.00771 1.20454 0.93084 0.99174 0.85185 1.55352 1.27850 1.69829 1.33489 1.04442 0.74297 0.74351 0.75149 1.93500 1.86172 1.76418 1.43037 1.93496 1.84748 1.33377 1.87520 1.30299 1.09197 1.15361 1.16711 1.18846 0.89306 0.97066 0.96949 1.21543 0.92768 1.34085 1.09142 0.90267 1.26142 0.99965 0.96692 0.97663 1.70117 1.12281 1.45628 1.29499 0.85298 0.77316 0.78347 0.79195 1.19653 1.21154 1.17931 1.21175 0.94448 0.98466 0.99539 1.21141 0.94528 0.99045 1.01099 0.82953 0.87220 0.91504 0.89817 0.80887 0.80401 0.82509 0.90619 0.87628 0.74047 0.83611 0.83427 0.97624 0.97606 0.92527 0.86872 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.83 10.74 113.37 1.22 -0.61 16 2 S 1.29 10.37 13.78 -56.49 -0.78 9.60 16 3 O -0.92 -23.48 18.14 -148.98 -2.70 -26.19 16 4 C -0.40 -2.94 6.05 71.23 0.43 -2.51 16 5 C -0.07 -1.02 5.14 -19.87 -0.10 -1.12 16 6 C -0.11 -1.02 9.70 22.27 0.22 -0.81 16 7 C -0.10 -1.26 9.70 22.27 0.22 -1.04 16 8 C -0.11 -2.00 5.28 -19.87 -0.10 -2.10 16 9 C 0.15 3.00 6.26 85.63 0.54 3.54 16 10 N -1.10 -26.44 5.88 -190.79 -1.12 -27.56 16 11 S 2.62 91.38 5.46 -56.49 -0.31 91.07 16 12 O -1.00 -41.65 18.08 -127.65 -2.31 -43.96 16 13 O -1.00 -42.13 17.50 -127.65 -2.23 -44.37 16 14 C -0.58 -20.88 6.01 71.98 0.43 -20.44 16 15 C 0.02 0.89 4.98 29.85 0.15 1.04 16 16 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 17 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 18 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 19 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 20 Si 0.97 42.82 29.54 68.60 2.03 44.84 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 C -0.12 -2.63 9.70 22.27 0.22 -2.42 16 25 C -0.14 -2.93 9.70 22.27 0.22 -2.71 16 26 H 0.15 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 30 H 0.17 -0.36 8.08 -2.39 -0.02 -0.38 16 31 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 32 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.08 1.76 7.64 -2.38 -0.02 1.74 16 34 H 0.11 1.56 8.09 -2.39 -0.02 1.54 16 35 H 0.42 8.68 8.61 -96.75 -0.83 7.84 16 36 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 37 H 0.15 4.49 8.14 -2.39 -0.02 4.47 16 38 H 0.01 0.30 8.14 -2.38 -0.02 0.29 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.11 2.69 8.06 -2.91 -0.02 2.66 16 42 H 0.10 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -94.93 386.58 -2.83 -97.77 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.19 Total: 13.46 kcal Atomic # 6 Polarization: -62.18 SS G_CDS: 4.12 Total: -58.06 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -0.84 Total: -84.17 kcal Atomic # 8 Polarization: -107.27 SS G_CDS: -7.24 Total: -114.51 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 101.76 SS G_CDS: -1.09 Total: 100.67 kcal Total: -94.93 -2.83 -97.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352387740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.099 kcal (2) G-P(sol) polarization free energy of solvation -94.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds