Wall clock time and date at job start Wed Apr 1 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37097 * 120.00084 * 2 1 4 4 H 1.08007 * 119.99735 * 142.82335 * 3 2 1 5 5 C 1.38948 * 120.00337 * 322.82863 * 3 2 1 6 6 N 1.31408 * 120.00254 * 158.40420 * 5 3 2 7 7 Si 1.86804 * 119.99482 * 338.40669 * 5 3 2 8 8 H 1.48499 * 109.47152 * 95.72132 * 7 5 3 9 9 H 1.48500 * 109.46875 * 215.71800 * 7 5 3 10 10 H 1.48495 * 109.47251 * 335.71975 * 7 5 3 11 11 C 1.34786 * 120.00106 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00021 * 179.97438 * 11 2 1 13 13 C 1.50698 * 119.99698 * 0.02562 * 11 2 1 14 14 C 1.50699 * 109.46879 * 179.97438 * 13 11 2 15 15 C 1.33446 * 122.71611 * 124.99677 * 14 13 11 16 16 S 1.76167 * 108.06885 * 179.97438 * 15 14 13 17 17 C 1.70968 * 90.34037 * 359.97438 * 16 15 14 18 18 N 1.38898 * 124.94253 * 179.97438 * 17 16 15 19 19 C 1.34772 * 120.00122 * 0.02935 * 18 17 16 20 20 O 1.21554 * 120.00051 * 359.97438 * 19 18 17 21 21 C 1.47796 * 119.99656 * 179.97438 * 19 18 17 22 22 C 1.39602 * 120.14942 * 359.72206 * 21 19 18 23 23 C 1.37952 * 119.84869 * 179.72273 * 22 21 19 24 24 C 1.38364 * 120.14831 * 0.55221 * 23 22 21 25 25 C 1.38366 * 120.29790 * 359.72901 * 24 23 22 26 26 C 1.37951 * 120.14828 * 359.97438 * 25 24 23 27 27 N 1.29645 * 110.11091 * 0.02562 * 17 16 15 28 28 H 1.08998 * 109.47150 * 265.13346 * 1 2 3 29 29 H 1.09000 * 109.47269 * 25.13185 * 1 2 3 30 30 H 1.09000 * 109.46856 * 145.13509 * 1 2 3 31 31 H 0.97000 * 119.99934 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47292 * 59.99555 * 13 11 2 33 33 H 1.09001 * 109.47309 * 299.99807 * 13 11 2 34 34 H 1.08011 * 125.96558 * 0.02562 * 15 14 13 35 35 H 0.97005 * 119.99843 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.07272 * 359.97438 * 22 21 19 37 37 H 1.08001 * 119.92553 * 180.27917 * 23 22 21 38 38 H 1.07998 * 119.85106 * 179.69371 * 24 23 22 39 39 H 1.07998 * 119.92771 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.08021 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5652 5 6 1.6675 2.2684 -0.7270 6 7 2.0433 3.4890 -0.4174 7 14 0.4840 1.9867 -2.1446 8 1 -0.9113 2.1586 -1.6662 9 1 0.7617 2.9683 -3.2237 10 1 0.6608 0.6094 -2.6708 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 6 2.3647 -3.6177 -0.0027 15 6 2.3439 -4.5852 0.9162 16 16 3.6452 -5.7147 0.5498 17 6 4.0922 -4.7755 -0.8070 18 7 5.1399 -5.0720 -1.6695 19 6 5.8906 -6.1723 -1.4647 20 8 5.6512 -6.9052 -0.5249 21 6 7.0049 -6.4880 -2.3829 22 6 7.2789 -5.6516 -3.4665 23 6 8.3242 -5.9490 -4.3163 24 6 9.0930 -7.0795 -4.1031 25 6 8.8231 -7.9158 -3.0344 26 6 7.7847 -7.6269 -2.1734 27 7 3.3117 -3.7458 -0.9131 28 1 -0.3633 -0.0872 1.0239 29 1 -0.3634 0.9304 -0.4364 30 1 -0.3633 -0.8432 -0.5875 31 1 1.7058 4.2437 -0.9247 32 1 0.7590 -2.5294 -0.8919 33 1 0.7584 -2.5307 0.8880 34 1 1.6499 -4.6627 1.7401 35 1 5.3311 -4.4870 -2.4193 36 1 6.6765 -4.7715 -3.6368 37 1 8.5401 -5.3004 -5.1524 38 1 9.9070 -7.3104 -4.7742 39 1 9.4268 -8.7969 -2.8739 40 1 7.5748 -8.2806 -1.3399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354135822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:30 Heat of formation + Delta-G solvation = 35.273282 kcal Electronic energy + Delta-G solvation = -26171.969559 eV Core-core repulsion = 22273.050504 eV Total energy + Delta-G solvation = -3898.919055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95190 -39.76177 -38.79527 -38.15322 -35.31519 -34.62206 -32.19619 -31.91521 -31.41138 -30.77138 -27.99501 -26.33677 -25.46726 -24.57821 -23.41021 -22.74450 -21.47682 -20.28940 -19.03578 -18.02888 -17.80923 -16.99406 -16.58066 -16.47183 -16.08402 -15.82359 -15.65502 -15.46296 -15.00451 -14.37065 -14.34225 -14.15111 -13.97566 -13.77451 -13.26271 -13.01954 -12.78300 -12.65309 -12.56155 -12.19838 -12.18319 -11.70039 -11.57638 -11.49436 -11.33779 -10.84116 -10.71257 -10.32958 -10.17981 -9.87739 -9.50858 -9.45952 -9.43187 -9.01479 -8.93372 -8.47208 -8.04457 -7.66388 -6.33834 -3.90063 0.26722 0.89769 1.01668 1.31002 2.02594 2.32086 2.46330 3.06185 3.15149 3.25316 3.30908 3.43705 3.83299 4.12774 4.19541 4.35001 4.46565 4.55548 4.61966 4.71837 4.89090 4.99688 5.04105 5.29223 5.36547 5.50845 5.55539 5.66899 5.75476 5.77339 5.81449 5.88643 5.91407 5.96962 5.99390 6.18083 6.31914 6.38280 6.38814 6.76140 7.51931 7.60937 8.06405 8.34269 8.59020 9.04471 9.38233 9.86203 10.78677 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.002568 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.969636 B =10901.452009 C =12280.822591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.477 5.477 3 C -0.311 4.311 4 H 0.104 0.896 5 C 0.056 3.944 6 N -0.868 5.868 7 Si 0.880 3.120 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.264 1.264 11 C 0.472 3.528 12 O -0.546 6.546 13 C -0.068 4.068 14 C 0.128 3.872 15 C -0.314 4.314 16 S 0.217 5.783 17 C 0.237 3.763 18 N -0.616 5.616 19 C 0.560 3.440 20 O -0.504 6.504 21 C -0.133 4.133 22 C -0.082 4.082 23 C -0.125 4.125 24 C -0.089 4.089 25 C -0.129 4.129 26 C -0.054 4.054 27 N -0.471 5.471 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.273 0.727 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.175 0.825 35 H 0.423 0.577 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 -23.496 -6.099 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.201 5.201 3 C -0.438 4.438 4 H 0.121 0.879 5 C -0.149 4.149 6 N -0.505 5.505 7 Si 0.708 3.292 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.189 1.189 11 C 0.259 3.741 12 O -0.426 6.426 13 C -0.111 4.111 14 C -0.005 4.005 15 C -0.454 4.454 16 S 0.466 5.534 17 C -0.130 4.130 18 N -0.266 5.266 19 C 0.348 3.652 20 O -0.380 6.380 21 C -0.136 4.136 22 C -0.100 4.100 23 C -0.143 4.143 24 C -0.107 4.107 25 C -0.147 4.147 26 C -0.072 4.072 27 N -0.192 5.192 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.193 0.807 35 H 0.262 0.738 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.357 -24.377 -5.498 26.050 hybrid contribution -1.260 1.387 -1.290 2.275 sum 6.097 -22.989 -6.788 24.734 Atomic orbital electron populations 1.21990 0.83546 1.01534 1.00904 1.43670 1.03907 1.05620 1.66859 1.19023 1.10055 0.85395 1.29360 0.87885 1.25370 0.97567 0.94807 0.97132 1.69758 1.44195 0.98047 1.38505 0.86920 0.80142 0.78979 0.83158 1.20367 1.21611 1.18860 1.19938 0.88231 0.84126 0.81836 1.90581 1.13638 1.86624 1.51760 1.20352 0.95994 0.90801 1.03978 1.19227 0.94580 0.96006 0.90685 1.27143 1.08250 1.02468 1.07544 1.84519 1.23917 1.23970 1.20971 1.23265 0.95613 0.96694 0.97439 1.42596 1.28280 1.26369 1.29318 1.18491 0.81935 0.79649 0.85168 1.90721 1.68785 1.48123 1.30347 1.19575 0.97885 0.98785 0.97338 1.21426 0.97122 0.98215 0.93276 1.21164 0.95453 0.97797 0.99885 1.21469 0.98509 0.93888 0.96863 1.21196 0.97891 1.00374 0.95200 1.21303 0.92797 0.94668 0.98479 1.66031 1.05974 1.17810 1.29401 0.93033 0.91690 0.92792 0.91718 0.88422 0.88348 0.80737 0.73751 0.85201 0.84926 0.85279 0.84975 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.26 8.78 59.84 0.53 1.78 16 2 N -0.48 -11.85 2.59 -122.19 -0.32 -12.16 16 3 C -0.31 -9.07 9.37 -14.93 -0.14 -9.21 16 4 H 0.10 3.38 7.90 -52.48 -0.41 2.97 16 5 C 0.06 1.59 5.29 -17.47 -0.09 1.50 16 6 N -0.87 -25.66 13.96 55.50 0.77 -24.88 16 7 Si 0.88 20.96 24.96 -169.99 -4.24 16.72 16 8 H -0.28 -6.07 6.69 56.52 0.38 -5.69 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 11 C 0.47 11.36 7.59 -10.98 -0.08 11.27 16 12 O -0.55 -15.45 15.31 5.55 0.08 -15.36 16 13 C -0.07 -1.22 4.81 -29.04 -0.14 -1.36 16 14 C 0.13 2.33 5.63 -84.20 -0.47 1.85 16 15 C -0.31 -4.75 11.05 29.06 0.32 -4.43 16 16 S 0.22 3.21 20.21 -107.50 -2.17 1.03 16 17 C 0.24 3.95 8.19 -87.43 -0.72 3.24 16 18 N -0.62 -8.31 5.35 -13.96 -0.07 -8.39 16 19 C 0.56 7.04 7.73 -12.35 -0.10 6.94 16 20 O -0.50 -7.32 13.81 5.32 0.07 -7.24 16 21 C -0.13 -1.30 5.87 -104.97 -0.62 -1.92 16 22 C -0.08 -0.66 9.54 -39.18 -0.37 -1.03 16 23 C -0.13 -0.82 10.03 -39.64 -0.40 -1.22 16 24 C -0.09 -0.53 10.04 -39.49 -0.40 -0.92 16 25 C -0.13 -0.83 10.03 -39.64 -0.40 -1.23 16 26 C -0.05 -0.46 9.60 -39.17 -0.38 -0.83 16 27 N -0.47 -9.13 9.73 -11.30 -0.11 -9.24 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.36 3.42 -51.93 -0.18 1.19 16 30 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 32 H 0.10 1.57 7.41 -51.93 -0.38 1.18 16 33 H 0.10 1.41 7.99 -51.93 -0.42 1.00 16 34 H 0.18 2.07 8.06 -52.48 -0.42 1.64 16 35 H 0.42 4.84 6.85 -40.82 -0.28 4.56 16 36 H 0.13 0.88 6.41 -52.49 -0.34 0.55 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -37.47 353.35 -8.14 -45.61 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.03 Total: 4.16 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -3.45 Total: 4.43 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.27 Total: -54.67 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.61 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.24 Total: 16.72 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.17 Total: 1.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.47 -8.14 -45.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354135822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.886 kcal (2) G-P(sol) polarization free energy of solvation -37.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds